BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490061
Length=536
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22380.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 488 2e-137
AT4G12600.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 392 2e-108
> AT4G22380.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr4:11811750-11813000 REVERSE LENGTH=756
Length=756
Score = 488 bits (264), Expect = 2e-137
Identities = 357/401 (89%), Gaps = 9/401 (2%)
Strand=Plus/Plus
Query 2 GAA-GAAGAAGATGACGGTAGAAGG-AGTGAATCCAAAGGCGTATCCGTTAGCTGATTCT 59
||| |||||||||||||| || ||| |||||| || ||||||||||||||||| ||||||
Sbjct 68 GAACGAAGAAGATGACGGGAG-AGGTAGTGAACCCTAAGGCGTATCCGTTAGCAGATTCT 126
Query 60 CAG-TTAGCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAGCTTAA 118
||| || ||||||| || | |||||||||||||||||||| || ||||| ||||||||
Sbjct 127 CAGCTT-TCGATAACAATAATGGATCTTGTTCAACAAGCTACTAACTACAAGCAGCTTAA 185
Query 119 GAAAGGAGCTAATGAAGCTACTAAGACATTGAACCGTGGGATCTCTGAGTTCGTTGTTAT 178
||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 186 GAAGGGAGCTAATGAAGCTACCAAAACATTGAACCGTGGAATCTCTGAGTTCGTTGTTAT 245
Query 179 GGCTGCTGATGCTGAGCCTCTTGAGATTCTTCTTCATCTTCCTCTT-CTTGCTGAAGATA 237
||||||||||||||| || |||||||||||||||||||||||| || ||||| |||||||
Sbjct 246 GGCTGCTGATGCTGAACCACTTGAGATTCTTCTTCATCTTCCT-TTGCTTGCCGAAGATA 304
Query 238 AGAATGTGCCATATGTGTTTGTGCCATCGAAACAAGCCCTTGG-AAGAGCATGTGGTGTA 296
|||||||||||||||||||||| || ||||||||||| |||| |||||||||||| |||
Sbjct 305 AGAATGTGCCATATGTGTTTGTACCTTCGAAACAAGCA-TTGGGAAGAGCATGTGGAGTA 363
Query 297 ACAAGACCGGTGATCGCTTGTTCGGTTACATCGAACGAGGCTAGTCAGTTGAAATCTCAG 356
|||||||| || || |||||||| || |||||||| ||||| || ||||||||||| |||
Sbjct 364 ACAAGACCTGTTATTGCTTGTTCAGTGACATCGAATGAGGCAAGCCAGTTGAAATCGCAG 423
Query 357 ATTCAGCACCTTAAGGATGCCATTGAGAAGCTCCTGATCTA 397
|||||||| || |||||||| ||||||||||||||||||||
Sbjct 424 ATTCAGCATCTCAAGGATGCAATTGAGAAGCTCCTGATCTA 464
> AT4G12600.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr4:7453201-7454515 FORWARD LENGTH=954
Length=954
Score = 392 bits (212), Expect = 2e-108
Identities = 231/240 (96%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 1 CGAAGAAGAAGATGACGGTAGAAGGAGTGAATCCAAAGGCGTATCCGTTAGCTGATTCTC 60
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 85 CGAAGAAGAAGATGACGGTAGAAGGAGTGAACCCTAAGGCGTATCCGTTAGCTGATTCTC 144
Query 61 AGTTAGCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAGCTTAA-G 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 145 AGTTATCGATAACGATTCTTGATCTTGTTCAACAAGCTACGAATTACAAACAG-TTAAAG 203
Query 120 AAAGGAGCTAATGAAGCTACTAAGACATTGAACCGTGGGATCTCTGAGTTCGTTGTTATG 179
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 204 AAAGGAGCTAATGAAGCTACCAAGACATTGAACCGTGGGATCTCTGAGTTCATTGTTATG 263
Query 180 GCTGCTGATGCTGAGCCTCTTGAGATTCTTCTTCATCTTCCTCTTCTTGCTGAAGATAAG 239
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 264 GCTGCTGATACTGAGCCTCTCGAGATTCTTCTTCATCTTCCTCTTCTTGCTGAAGATAAG 323
Score = 357 bits (193), Expect = 6e-98
Identities = 280/317 (88%), Gaps = 25/317 (8%)
Strand=Plus/Plus
Query 240 AATGTGCCATATGTGTTTGTGCCATCGAAACAAGCCCTTGGAAGAGCATGTGGTGTAACA 299
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 489 AATGTGCCGTATGTGTTTGTGCCATCGAAACAAGCCCTTGGAAGAGCATGTGATGTAACC 548
Query 300 AGACCGGTGATCGCTTGTTCGGTTACATCGAACGAGGCTAGTCAGTTGAAATCTCAGATT 359
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 549 AGACCCGTGATCGCTTGTTCCGTTACATCAAACGAGGCTAGTCAGTTGAAATCTCAAATT 608
Query 360 CAGCACCTTAAGGATGCCATTGAGAAGCTCCTGATCTAGATTTTTGGTGGGAATGAATGA 419
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 609 CAGCACCTTAAGGATGCCATTGAGAAGCTCCTCATCTAGATTCTTGGTGG-AATGAATGA 667
Query 420 ATGAATGATGGGTCTCTCCATTTATGAAGAGGCTTTGACTGAAGTTAGTTT--GTGCAAC 477
|||| || || ||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 668 ATGA-TG--GG-TCTCTCCATTTATGAAGAGGCTTGGACTGAAGTGAGTTTATGTGCAAC 723
Query 478 -----A---T-T-A-AAAAAC-------TTGTGAACGAATCCTATCCATTTTGAAGATTG 519
| | | | |||||| ||||||||||||||||||| ||||||||||||
Sbjct 724 TTTTTAGCCTATGAGAAAAACAAAAAACTTGTGAACGAATCCTATCCTTTTTGAAGATTG 783
Query 520 TAATGCTTTTTATTTGA 536
|||||||||||||||||
Sbjct 784 TAATGCTTTTTATTTGA 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25669649117
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5