BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490068
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05530.1 | Symbols: IBR1, SDRA | indole-3-butyric acid respo... 1304 0.0
> AT4G05530.1 | Symbols: IBR1, SDRA | indole-3-butyric acid response
1 | chr4:2816392-2818365 FORWARD LENGTH=1126
Length=1126
Score = 1304 bits (706), Expect = 0.0
Identities = 778/813 (96%), Gaps = 3/813 (0%)
Strand=Plus/Plus
Query 1 AAAACAATCATTGGAAGAAGCaaaaaaaaaaaaaaaaGATAGAAATGGAGAAGAAGGTAC 60
||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| |||
Sbjct 28 AAAACAATCATTGGAAGAAGC-AAAAGAAAAAAAAAAGATTGAAATGGAGAAGAAGCTAC 86
Query 61 CGAGAAGATTGGAAGGTAAAGTCGCAATTGTGACAGCTTCGACGCAAGGAATTGGCTTCG 120
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 87 CGAGAAGATTGGAAGGCAAAGTCGCGATTGTGACGGCTTCGACGCAAGGGATTGGTTTCG 146
Query 121 GAATCATTGAACGTTTCGGTCTCGAAGGCGCTTCCGTCGTCGTCTCTTCCCGCAAACAGG 180
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GAATCACTGAGCGTTTCGGTCTCGAAGGCGCTTCCGTCGTCGTCTCTTCCCGCAAACAGG 206
Query 181 CAAATGTTGATGAGGCAGTAGCAAAACTCAAATCCAAAGGGATTGATGCATATGGAATCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CAAATGTTGATGAGGCAGTAGCAAAACTCAAATCCAAAGGGATTGATGCATATGGAATCG 266
Query 241 TCTGTCATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACTGTACAGAAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 267 TCTGTCATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAGAAAT 326
Query 301 ATGGGAAGATAGATATCGTTGTCTGTAACGCCGCTGCCAATCCATCTACAGACCCAATCT 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 327 ATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCTACAGACCCAATCT 386
Query 361 TGTCTAGTAAAGAAGCTGTTCTTGACAAGCTATGGGAAATCAATGTCAAATCCTCTATTC 420
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 387 TGTCTAGCAAAGAAGCTGTTCTTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATAC 446
Query 421 TTCTCCTTCAGGATATGGCTCCTCACCTAGAGAAGGGTTCTTCTGTTATCTTCATAACTT 480
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 447 TTCTCCTGCAGGATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTT 506
Query 481 CTATTGCTGGATTT-CAACCACAAGGAGCCATGGCTATGTATGGGGTCACTAAGACTGCT 539
|||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 507 CTATTGCTGGATTTTCA-CCACAAGGAGCTATGGCTATGTATGGTGTCACTAAAACTGCT 565
Query 540 CTTCTCGGACTAACCAAGGCACTTGCTGCTGAGATGGCTCCTGATACACGTGTGAATGCA 599
|||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 566 CTTCTCGGACTAACTAAGGCGCTTGCTGCTGAGATGGCCCCCGATACACGTGTGAACGCA 625
Query 600 GTTGCACCCGGTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGAAGCTCCGAAGTG 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 626 GTTGCACCCGGTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTG 685
Query 660 AGGGAAGGCATCGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCT 719
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 AGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCT 745
Query 720 GCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACATCACGGGAGAAACTTTGGTC 779
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 746 GCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACATCACTGGAGAAACTTTGGTT 805
Query 780 GTCGCTGGAGGAATGCCTTCAAGACTCTAAACA 812
|||||||||||||||||||||||||||||||||
Sbjct 806 GTCGCTGGAGGAATGCCTTCAAGACTCTAAACA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5