BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490074
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03965.1 | Symbols: | RING/U-box superfamily protein | chr4... 1203 0.0
> AT4G03965.1 | Symbols: | RING/U-box superfamily protein | chr4:1889473-1890412
FORWARD LENGTH=940
Length=940
Score = 1203 bits (651), Expect = 0.0
Identities = 832/912 (91%), Gaps = 41/912 (4%)
Strand=Plus/Plus
Query 1 CACTCTCTCTTCAATGGCGGAATATTTT-TTCAGAATCCATTCTTATTTATTCTTCTCGT 59
||| |||||||||||||||||| ||||| |||||||||| ||||| |||||| |||||||
Sbjct 5 CACACTCTCTTCAATGGCGGAA-ATTTTCTTCAGAATCCTTTCTTGTTTATTTTTCTCGT 63
Query 60 AGTCCTCTCTTC-TTTAACA-CGTCTGTAGCTGAGTCGACAATGAGTCAACTCGATGTTG 117
| |||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 64 AATCCTCTCTTCTTTTAA-AGCGTCTGTAGCTGAGTCGACAATGAGTCAACTCGGTGTTG 122
Query 118 AAACTAGTCAAGCCCAGCCGGAGACGTCACAGTCAACGACATTCCTCGATTTGCTCCGAC 177
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 123 AAACTAGTCAAGCCCAGCCGGAGACGCCACAGTCAACGACATTTCTCGATTTGCTCCGAC 182
Query 178 TTCAAATGGACGGTGGTGTCGATCGAACTAGGAGAAGGAAACGAACACTTAAAGAACGGT 237
| ||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 183 TCCAAATGGAC---GGTCTCGATCGAAGTAGGAGAAGGAAACGAACTCTTAAAGAACGGC 239
Query 238 TAGGATTCAAACGAATTGGTTGCTGTGGACCAACATGGGGTCTCCGGTTAACCAGTAGTA 297
||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||
Sbjct 240 TAGGATTCAAACGAATTGGATGCTGTGGACCAACTTGGGGTCTCCGGTTAA-CA--AGTA 296
Query 298 ACACTCGCGAAG--G-CGACGAACCATATG-AAACCCGATTCGTTTCCGGGTCGGATCAT 353
||||| |||||| | |||||| |||| || ||||| | || ||||||||||||||||||
Sbjct 297 ACACTGGCGAAGACGACGACGAGCCATTTGAAAACCGGCTT-GTTTCCGGGTCGGATCAT 355
Query 354 GTAACGGGTCCGTTAAATCAAGGTATGAATCTCGCAACGGCGTTAGCAGCGGAGAGAAAT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTAACGGGTCCGTTAAATCAAGGTATGAATCTCGCAACGGCGTTAGCAGCGGAGAGAAAT 415
Query 414 TACCGAACGGAGGAAACGGAAGCATCAGGGAGTTTAACGCCGTTAAGAGTATCGTTAATG 473
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 416 TACCGAACGGAGGAAACGGAAGCATCAGGGAGTTTAACGCCGTTAAAAGTGTCGTTAATG 475
Query 474 AGATTGCTTGAAGAAACGGCGGAGAGAGTCGTCGTTGAAGGGAAGGAAACGGAGGGATTA 533
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| || ||
Sbjct 476 AGATTGCTCGAAGAAACGGCGGAGAGAGTCGTCGTTGAAGAGAATGAAACGGAGAGAGTA 535
Query 534 ACGGCGTCG---TCGTCGA-----A------T-------GATTCGGTGTGTTGCGTGTGC 572
||||||||| ||||||| | | |||||||||||||||||||||
Sbjct 536 ACGGCGTCGGCGTCGTCGACGGTTAGAGGAGTTAATAATGATTCGGTGTGTTGCGTGTGC 595
Query 573 ATGGGAAGGAAGAAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATGGGAAGGAAGAAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGT 655
Query 633 TCTCGAGAGGTGTGGCTTAATCGAGGATCGTGTCCCCTTTGTAACCGTCCGATCATCGAG 692
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TCTCGAGAGGTGTGGCTTAATCGAGGATCGTGTCCTCTTTGTAACCGTCCGATCATCGAG 715
Query 693 ATCCTCGACATTTATTGATTATTGAATCCTACGGCTCATATTAGTCCGGTTGCACGTGAC 752
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 716 ATCCTCGACATTTATTGATTACTGAATCCTACGGCTCAAATTAGTCCGGTTGCACGTGAG 775
Query 753 TTCAGTGAGGTACTGGTGTGCCTAGAGATTCACGAGAGTGTTACATATGAAATTTAATTA 812
||||||||||| || |||||||||||||||||||| |||||| || |||||||||| |
Sbjct 776 TTCAGTGAGGTGGTG-TGTGCCTAGAGATTCACGAG--TGTTACGTACGAAATTTAATCA 832
Query 813 CGGTGTCTATGTTT-CTCTTATTGGAAATTGGAGTATTATTCATTATTAGAGATCAAAAG 871
|||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 833 CGGTGTCTATGTTTTCTCTTATTGGAATTTGGAGTATCATTCATTATCAGAGATCAAAAG 892
Query 872 TAATTCAAGATT 883
||||||||||||
Sbjct 893 TAATTCAAGATT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5