BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490075
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04040.1 | Symbols: MEE51 | Phosphofructokinase family prote... 2835 0.0
AT2G05150.1 | Symbols: | pseudogene, similar to pyrophosphate-... 182 1e-44
AT4G08876.1 | Symbols: | pyrophosphate--fructose-6-phosphate 1... 167 4e-40
AT1G43766.1 | Symbols: | pseudogene, putative phosphofructokin... 159 7e-38
> AT4G04040.1 | Symbols: MEE51 | Phosphofructokinase family protein
| chr4:1939250-1942954 FORWARD LENGTH=1899
Length=1899
Score = 2835 bits (1535), Expect = 0.0
Identities = 1690/1765 (96%), Gaps = 10/1765 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCACAGTTAGATTTAATCGGAGAAGACTACATCGCCGGAATCTCGAGT-AATCC 59
|||||| |||| |||||||| ||||||| |||||||||||||||||| |||| | |||||
Sbjct 1 ATGGCATCACAATTAGATTTGATCGGAGGAGACTACATCGCCGGAATTTCGA-TCAATCC 59
Query 60 TCCGGTGAATAGCCGTGTGACTTCTGTATACAGCGAAGTCCAAGCGAGTCGTATCGACCA 119
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 TCCGACGAATAGCCGTGTGACTTCTGTATACAGCGAAGTCCAAGCTAGTCGTATCGACCA 119
Query 120 CACGCTTCCTCTTCCTTCCGTCTTTAAAACTCCC-TTCAAGATCATCGATGGTCCTCCGA 178
||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 120 CACACTTCCTCTTCCTTCCGTCTTTAAAAC-CCCTTTCAAGATCATCGATGGTCCTCCAA 178
Query 179 GCTCCGCCGCCGGACATCCAGAGGAAATTGAGAAATTATTCCCAAATTTATTTGGACAAC 238
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 GCTCCTCCGCCGGACATCCAGAGGAAATTGAGAAATTATTCCCTAATTTATTTGGACAAC 238
Query 239 CATCGGCTATATTGGTTCCTAACCAATCTAATGAAGTTTCATC-GAGTCAAAAGCTTAAG 297
|||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 239 CATCAGCTTTATTGGTTCCTAACCAATCTAATGAAGTTTCATCGGA-TCAAAAGCTTAAG 297
Query 298 ATTGGTGTTGTGTTGTCTGGTGGTCAAGCACCTGGAGGACACAATGTTATCTGTGGAATC 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 ATTGGTGTTGTGTTGTCTGGTGGTCAAGCACCTGGAGGACACAATGTTATTTGTGGAATC 357
Query 358 TTTGATTACTTGCAAGAATATGCGAA-AGGAAGTAGTCTGTTTGGTTTTCGTGGCGGTCC 416
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 358 TTTGATTACTTGCAAGAATATGC-AAGAGGAAGTAGTCTGTTTGGTTTTCGTGGCGGTCC 416
Query 417 AGCTGGAATCATGAAGGGGAAATATATTGAGCTTACTTCTGAGTTTGTGTATCCTTATAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 AGCTGGAATCATGAAGGGGAAATATATTGAGCTTACTTCTGAGTTTGTGTACCCTTATAG 476
Query 477 AAACCAGGGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAACCAGGGTGGATTTGATATGATATGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCA 536
Query 537 GTTTCATCAAGCTGAAGAGACTGTAACAAAGATGGACTTAGATGGTCTTGTGGTTATTGG 596
|||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 537 GTTTAAGCAAGCTGAAGAGACTGTTACAAAGATGGATTTAGATGGTCTTGTGGTAATTGG 596
Query 597 TGGAGATGACTCCAATACTAATGCTTGTCTCCTTGCTGAACACTTCAGAGCTAAAAACAT 656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TGGAGATGACTCCAATACTAATGCTTGTCTCCTTGCTGAACACTTTAGAGCTAAAAACAT 656
Query 657 GAAAACTCGGGTTATTGGGTGCCCCAAGACAATCGATGGTGATTTAAAGAGCAAAGAAGT 716
|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 GAAAACTCTGGTTATTGGATGCCCTAAGACAATCGATGGTGATTTAAAGAGCAAAGAAGT 716
Query 717 CCCCGCGAGTTTCGGGTTTGATACTGCTTGCAAGATATACTCAGAAATGATTGGAAATGT 776
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCCCACGAGTTTCGGGTTTGATACTGCTTGCAAGATATACTCAGAAATGATTGGAAATGT 776
Query 777 TATGATCGATGCACGTTCCACCGGAAAATACTATCACTTCGTGCGTCTTATGGGCCGTGC 836
|||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 777 TATGATCGATGCGCGTTCCACGGGAAAATACTATCACTTTGTGCGTCTTATGGGTCGTGC 836
Query 837 TGCTTCTCATATTACACTTGAATGTGCTTTGCAAACCCATCCAAACATTACCATTATTGG 896
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 TGCTTCTCACATTACACTTGAATGCGCTTTGCAAACCCATCCAAACATTACCATTATTGG 896
Query 897 AGAAGAGGTTTTCGAGAAGAAGCTTACGTTGAAAAATGTTACTGATTACATTGTTGATGT 956
|||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 897 AGAAGAGGTTTTTGAGAAGAAGCTTACGTTGAAAAATGTTACAGATAACATTGTTGATGT 956
Query 957 GATCTGTAAACGAGCAGAAAATGGTTATAACTACGGTGTCATTCTTGTTCCTGAAGGTCT 1016
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GATCTATAAACGAGCAGAAAATGGTTATAACTACGGTGTCATTCTTGTTCCTGAAGGTCT 1016
Query 1017 CATTGATTTTATCCCTGAGGTCCAAGAGCTTATATCCGAACTGAATGAAGTATTAGCAGA 1076
|||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||
Sbjct 1017 AATTGATTTTATCCCTGAGGTCCAACAGCTTATTTCCGAACTGAATGAAGTCTTAGCCGA 1076
Query 1077 AGGAAACGTCGATGAAGAAGGCCAATGGAAGAAGAATCTTAAAGAAGAGACTTTAAAGAT 1136
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1077 AGGAAACGTCGATGAAGAAGGCCAATGGAAGAAGAATCTTAAAAAAGAGACTTTAGAGAT 1136
Query 1137 TTTTGAGTTTCTTCCTCAAACTATTCAAGAACAACTAATGCTTGAGAGAGATCCACATGG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTTTGAGTTTCTTCCTCAAACTATTCAAGAACAACTAATGCTTGAGAGAGATCCACATGG 1196
Query 1197 AAATGTCCAGGTTGCTAAAATAGAGACAGAGAAAATGTTGATTCAAATGGTTGAAACCGA 1256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAATGTGCAGGTTGCTAAAATAGAGACAGAGAAAATGTTGATTCAAATGGTTGAAACCGA 1256
Query 1257 GTTAGAGAAAAAGAAGGA-GGAGGGTACATACAAACGCGAGTTCATGGGGAAATCACACT 1315
| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 GCTAGAGAAAAAGAA-GACAGAGGGTACATATGAACGCGAGTTCATGGGGAAATCACACT 1315
Query 1316 TCTTTGGGTATGAAGGAAGATGCGGGTTACCTACGAATTTCGATGCAACTTACTGCTACG 1375
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1316 TCTTTGGGTATGAAGGAAGATGCGGCTTACCTACAAATTTCGATGCAACTTACTGCTACG 1375
Query 1376 CATTAGGTTATGGTGCTGGATCACTTCTCCAGAGCGAAAAGACTGGATTAATTTCATCGG 1435
|||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1376 CATTAGGTTACGGTGCTGGATCACTTCTCCAGAGCGGAAAGACCGGATTAATTTCATCGG 1435
Query 1436 TTGGAAATTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTACCGCGCTGACTGCGT 1495
||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1436 TTGGAAACTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTACTGCACTGACTTCGT 1495
Query 1496 TGATGGATGTTGAGAGAAGACATGGTAAATTCAAGCCTGTTATCAAGAAAGCTATGGTTG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGATGGATGTTGAGAGAAGACATGGTAAATTCAAGCCTGTTATCAAGAAAGCTATGGTTG 1555
Query 1556 AACTTGAAGGTGCACCGTTTAAGAAATTTGCATCACAGCGCGAAGAATGGGCTTTGAAGA 1615
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1556 AACTTGAAGGTGCACCGTTTAAGAAATTTGCATCACAGCGAGAAGAATGGGCTTTGAAGA 1615
Query 1616 ATCGATACATTAGTCCTGGTCCGATTCAGTTTAAGGGACCGGGATCTGATGCGAGAAATC 1675
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1616 ATCGATACATTAGTCCTGGTCCAATTCAGTTTAAGGGACCGGGATCTGATGCGAGAAATC 1675
Query 1676 ACACCTTAATGCTCGAACTCGGGGCTCAAGCCTAAAGAGTTTTCCTACTATCAGATTCAC 1735
|||| ||||||||||||||||||||||||||||||||| |||| |||| | ||||||||
Sbjct 1676 ACACATTAATGCTCGAACTCGGGGCTCAAGCCTAAAGAATTTTGGTACTGTGAGATTCAC 1735
Query 1736 TCACTGACTCACTTTCTTTGTTGTT 1760
|||||||||||||||||||||||||
Sbjct 1736 TCACTGACTCACTTTCTTTGTTGTT 1760
Score = 69.4 bits (37), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1792 ATAGATGACACGTGTGTTAATAATAAAGTTTCGCAATTTCATA 1834
||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1855 ATAGATGACTCATGTGTTAATAATAAAGTTTCGCAATTTCATA 1897
> AT2G05150.1 | Symbols: | pseudogene, similar to pyrophosphate-dependent
phosphofructokinase beta subunit, blastp match
of 55% identity and 7.1e-19 P-value to GP|3790100|gb|AAC67586.1||AF095520
pyrophosphate-dependent phosphofructokinase beta
subunit {Citrus x paradisi} | chr2:1857570-1857927 FORWARD
LENGTH=358
Length=358
Score = 182 bits (98), Expect = 1e-44
Identities = 120/131 (92%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 1035 GGTCCAAGAGCTTATATCCGAACTGAATGAAGTATTAGCAGAAGGAAACGTCGATGAAGA 1094
||| ||| ||||||| ||| ||||||||||||| ||||| ||||||||| |||| |||||
Sbjct 228 GGTTCAAAAGCTTATTTCCAAACTGAATGAAGTCTTAGCCGAAGGAAACATCGAGGAAGA 287
Query 1095 AGGCCAATGGAAGAAGAATCTTAAAGAAGAGACTTTAAAGATTTTTGAGTTTCTTCCTCA 1154
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 288 AGGTCAATGGAAGAAGAATCTTAAAGAAGAGACATTAAAGATTTTTGAGTTTCTTCCTCA 347
Query 1155 AACTATTCAAG 1165
|| ||||||||
Sbjct 348 AAATATTCAAG 358
> AT4G08876.1 | Symbols: | pyrophosphate--fructose-6-phosphate
1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related
| chr4:5677395-5677728 FORWARD
LENGTH=192
Length=192
Score = 167 bits (90), Expect = 4e-40
Identities = 112/123 (91%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1043 AGCTTATATCCGAACTGAATGAAGTATTAGCAGAAGGAAACGTCGATGAAGAAGGCCAAT 1102
||||||| ||||||||||||||||| |||||||||| |||| ||| ||| |||| ||||
Sbjct 59 AGCTTATTTCCGAACTGAATGAAGTCTTAGCAGAAGAAAACACCGAGGAAAAAGGTCAAT 118
Query 1103 GGAAGAAGAATCTTAAAGAAGAGACTTTAAAGATTTTTGAGTTTCTTCCTCAAACTATTC 1162
||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct 119 GGAAGAAGAATCTTAAAGAAGAGACCTTAAAGATTTTCGAGTTTCTTCCTCAAAATATTC 178
Query 1163 AAG 1165
|||
Sbjct 179 AAG 181
> AT1G43766.1 | Symbols: | pseudogene, putative phosphofructokinase
beta subunit, similar to pyrophosphate-dependent phosphofructokinase
beta subunit GB:AAC67586 GI:3790100 from (Citrus
x paradisi); blastp match of 58% identity and 9.9e-12 P-value
to GP|3790100|gb|AAC67586.1||AF095520 pyrophosphate-dependent
phosphofructokinase beta subunit {Citrus x paradisi}
| chr1:16546067-16546415 FORWARD LENGTH=349
Length=349
Score = 159 bits (86), Expect = 7e-38
Identities = 116/131 (89%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 1035 GGTCCAAGAGCTTATATCCGAACTGAATGAAGTATTAGCAGAAGGAAACGTCGATGAAGA 1094
||| |||||| |||| || |||||||||||| | |||||| |||| ||| |||| ||| |
Sbjct 203 GGTTCAAGAGTTTATTTCTGAACTGAATGAAATCTTAGCATAAGGTAACATCGAAGAAAA 262
Query 1095 AGGCCAATGGAAGAAGAATCTTAAAGAAGAGACTTTAAAGATTTTTGAGTTTCTTCCTCA 1154
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 263 AGGTCAATGGAAGAAGAATTTTAAAGAAGAGACATTAAAGATTTTTGAGTTTCTTCCTCA 322
Query 1155 AACTATTCAAG 1165
|| ||||||||
Sbjct 323 AAATATTCAAG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90762585360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5