BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490077
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04190.1 | Symbols: | unknown protein; Has 35 Blast hits to... 1018 0.0
> AT4G04190.1 | Symbols: | unknown protein; Has 35 Blast hits
to 35 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr4:2024633-2026460 FORWARD
LENGTH=819
Length=819
Score = 1018 bits (551), Expect = 0.0
Identities = 682/739 (92%), Gaps = 33/739 (4%)
Strand=Plus/Plus
Query 1 TTGGTCTGTTCTTCAGTCCTTGAAGTGATTTGATACGGAGCCGTCATGGATGTTGATTCT 60
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 90 TTGGTTTGTTCTTCAGTTCTTGAAGTGATTTGATACGGAGCAGTCATGGATGTTGATTCA 149
Query 61 CAACCAATGATGGAGGAGACCATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 150 CAACCAATGATGGAGGAGACTATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCT 209
Query 121 CCTGTCATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGAATTGTGTGATGGG 180
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 210 CCTGTTATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGATTTGTGCGATGGG 269
Query 181 ATTTTGAGGAATCTATTCCTATGCTTGCAAATCAATGATATTGAACCATTTTGCCAAGAT 240
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 270 ATTTTGAGGAATCTATTCCTGTGTTTGCAAATCAATGATATTGAACCATTTTGCCAAGAT 329
Query 241 GAGCTTGCCTTGTATCGACAATGTGCTGAAAAGAGGGACAAGATATTGAGAGTAAGACTT 300
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 330 GAGCTTGCATTGTATCGACAATGTGCTGAAAAGAGGGACAAAATATTGAGAGTTAGACTT 389
Query 301 CAGGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CAAGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATT 449
Query 361 ACGCAGCTTGAAGCTGAAGCCACATCACTAGAGAGGCACTTGATTCTAGCAAGTGGAGCT 420
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 450 ACGCAGCTTGAAGCTGAAGCCACATCTTTTGAGAGGCACTTGATTCTAGCAAGTGGAGCT 509
Query 421 GAAGGAATTGAAGGATTTCGCCGGAGATGGAGTTTGCACGGTCGGATGACGGATACCaaa 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 510 GAAGGAATAGAAGGATTTCGCCGGAGATGGAGTTTACACGGTCGGATGACGGATACCAAA 569
Query 481 aaaaGACTGGAGTCACTGAAGCTGGGAATGGAGAACAGGAACAAGGATGAACATGAACAT 540
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 570 AAAAGACTGGAGTCACTGAAGCAGGGAATGGAGAACAGGAACAAGGTTGAACATGAACAT 629
Query 541 AACCATAACCATAACCATAACCATGATCAGTCCCCAAAACCTTCTGCTCCCAAAAGATGG 600
||||| | | | |||| |||||||||||||||||||||||||| |||||||||
Sbjct 630 AACCA-A-C-A---CCAT------GATCAGTCCCCAAAACCTTCTGCTCCAAAAAGATGG 677
Query 601 TTCTTTTGGTGA-----AT---GAATCATGTTTTGGATCATAAAAGGTTCATAATCATTA 652
|||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTCTTTTGGTGATTTCCATATTGAATCATGTTTTGGATCATAAAAGGTTCATAATCATTA 737
Query 653 CACTTATTATGGTGCAGGTGCTTCCCAATGTAACCACTTTTAGCAATTAAAAGTATA-AT 711
||||||| ||||||| | |||||||||||||||||| |||||||||| | ||
Sbjct 738 CACTTAT---GGTGCAG---C-----AATGTAACCACTTTTAGCTATTAAAAGTA-ACAT 785
Query 712 TAAAAATCTAAAATGTTTT 730
||||||||||||| |||||
Sbjct 786 TAAAAATCTAAAAAGTTTT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5