BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490079
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04200.1 | Symbols: | Microsomal signal peptidase 25 kDa su... 911 0.0
AT2G39960.1 | Symbols: | Microsomal signal peptidase 25 kDa su... 556 6e-158
> AT4G04200.1 | Symbols: | Microsomal signal peptidase 25 kDa
subunit (SPC25) | chr4:2027165-2028978 FORWARD LENGTH=685
Length=685
Score = 911 bits (493), Expect = 0.0
Identities = 548/575 (95%), Gaps = 2/575 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAAGAAGACAGAATCTGCGACTAAAAACGTTAAAAAGGTTAACTTGTTAGAC 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAGAAGAAGACAGAATCCGCGACTAAGAACGTTAAAAAGGTTAACTTGTTAGAC 60
Query 61 CACAACGCTATCAAACACCTCCTTGATGAATCCGTCTCCGATATCGTTACGAGCAGAGGG 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACATCGCAATCAAACACCTCCTTGATGAATCCGTCTCCGATATCGTTACGAGCAGAGGG 120
Query 121 TACAAGGAGGATGTGAGATTAAGCAACGTCAAATTTCTGTTAGGAGCGATTATAATTGTG 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 121 TACAAGGAGGATGTGAGATTAAGCAACGTCAAATTTCTGTTAGGAGGGATTATAATCGTG 180
Query 181 GTGGCTCTTGTTGCTCAATTCTACAATAAGAAATGTGGGATTTGTTTGATTCTTGACTCT 240
|| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 181 GTTGCTCTTGTTGCTCAATTCTACAACAAGAAATGTGGGATTTGTTTGCTTCTTGACTTT 240
Query 241 GGCAAGTATGTGGTGTTGACTGCGGTAATGCAGCTGATTCTGTTCATTAAGGAGAAGAAC 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GGCAAGTATGTGGTGTTGACTGCGGTAATGCAGCTGATTCTGTACATTAAGGAGAAGAAC 300
Query 301 GCCATCTTGTTCACCTATCCTTTTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCT 360
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTATCTTGTTCACCTATCCTCTTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCT 360
Query 361 TCCAAGTTACCTAGATTCTCTGATCAGTACACTCTCACCATCGACAGTGCTGATCCGAAA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 361 TCCAAGTTACCTAGATTCTCTGATCAGTACACTCTAACCATCGACAGTGCTGATCCGCAA 420
Query 421 TCAATCTCAGCTGGGAAGTCAGTTCAGTTCACCAAGAGTGTCACTCAATGGCTCACAAAA 480
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TCAATCTCAGCTGGGAAGTCGGTTCAGTTCACCAAAAGTGTCACTCAATGGCTCACAAAA 480
Query 481 GATGGAGTTCTTGTTGAAGGTTTGTTCTGGAAAGATGTTGATGCCCTAATCAAGGAGTAC 540
|||||||||||||| || ||||| ||||||||||||||||| |||||| |||| ||||||
Sbjct 481 GATGGAGTTCTTGTCGAGGGTTTATTCTGGAAAGATGTTGAAGCCCTAGTCAAAGAGTAC 540
Query 541 A-ACGAAGCAGAAGAACCAAAGAAGAAGAAATGAT 574
| | ||||||| ||||||||||||||||| |||||
Sbjct 541 ACA-GAAGCAGGAGAACCAAAGAAGAAGAGATGAT 574
> AT2G39960.1 | Symbols: | Microsomal signal peptidase 25 kDa
subunit (SPC25) | chr2:16681474-16683640 REVERSE LENGTH=920
Length=920
Score = 556 bits (301), Expect = 6e-158
Identities = 497/589 (84%), Gaps = 24/589 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAAGAAGACAGAATC-TGCGACTAAAAACGTTAAAAAGGTTAACT-TGTTAG 58
||||| ||||||||||||||||| | || || || ||||| |||| || | | || |
Sbjct 150 ATGGAGGAGAAGAAGACAGAATCAACCAAC-AAGAATGTTAAGAAGGCCAA-TCTATTGG 207
Query 59 ACCACAACGCTATCAAACACCTCCTTGATGAATCCGTCTCCGATATCGTTACGAGCAGAG 118
||||| || | ||||| ||| ||||||| ||||||||||||||||||||||||||| | |
Sbjct 208 ACCACCACTCGATCAAGCACATCCTTGACGAATCCGTCTCCGATATCGTTACGAGCCGTG 267
Query 119 GGTACAAGGAGGATGTGAGATTAAGCAACGTCAAATTTCTGTTAGGAGCGATTATAATTG 178
| || ||||||||||||||||| |||||| ||||| | | || ||| ||||||| || |
Sbjct 268 GCTATAAGGAGGATGTGAGATTGAGCAACCTCAAACTGATTTTGGGAACGATTATCATCG 327
Query 179 TGGTGGCTCTTGTTGCTCAATTCTACAATAAGAAA-----T--G---TGGGATTTGTTTG 228
| || ||||||||||||||||||||||| |||||| | | ||||||| ||||
Sbjct 328 TTGTTGCTCTTGTTGCTCAATTCTACAACAAGAAATTCCCTGAGAACAGGGATTT-TTTG 386
Query 229 ATTCTTGACT-C-TGGCA-AGTATGTGGTGTTGACTGCGGTAATGCAGCTGATTCTGTTC 285
| | | || | | | ||| |||||| ||||||| |||||| ||||||||||||||| |
Sbjct 387 A-T-TGGA-TGCATCGCATTGTATGTAGTGTTGAATGCGGTGTTGCAGCTGATTCTGTAC 443
Query 286 ATTAAGGAGAAGAACGCCATCTTGTTCACCTATCCTTTTGAGGGATCATTCACCAGCACT 345
| |||||||||||| || || ||||||||||||||| ||||||||||||||||||||||
Sbjct 444 ACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGGGATCATTCACCAGCACT 503
Query 346 GGTTTGGTGGTATCTTCCAAGTTACCTAGATTCTCTGATCAGTACACTCTCACCATCGAC 405
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 504 GGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCTCTGATCAGTACACTCTCACCATCGAC 563
Query 406 AGTGCTGATCCGAAATCAATCTCAGCTGGGAAGTCAGTTCAGTTCACCAAGAGTGTCACT 465
||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 564 AGTGCTGATCCAAAATCAATCTCAGCTGGGAAGTCAGTTCAGCTCACCAAAAGTGTCACC 623
Query 466 CAATGGCTCACAAAAGATGGAGTTCTTGTTGAAGGTTTGTTCTGGAAAGATGTTGATGCC 525
|||||| |||| |||||||||||||||||||| ||||| ||||||||||| || || ||
Sbjct 624 CAATGGTTCACGAAAGATGGAGTTCTTGTTGAGGGTTTATTCTGGAAAGACGTAGAAGCA 683
Query 526 CTAATCAAGGAGTACAACGAAGCAGAAGAACCAAAGAAGAAGAAATGAT 574
||||||||| | || | | || ||||||||||||||||||||||||||
Sbjct 684 CTAATCAAG-A--ACTATGCAGAAGAAGAACCAAAGAAGAAGAAATGAT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5