BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490080
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing prote... 1474 0.0
AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing prote... 527 9e-149
> AT4G04210.1 | Symbols: PUX4 | plant UBX domain containing protein
4 | chr4:2030319-2031853 FORWARD LENGTH=1167
Length=1167
Score = 1474 bits (798), Expect = 0.0
Identities = 977/1061 (92%), Gaps = 21/1061 (2%)
Strand=Plus/Plus
Query 1 AAAAAAGAGAATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCGTGGTG 59
|||||| | ||||||||||||||||||||||||| || || ||||||| |||||||||||
Sbjct 63 AAAAAACACAATGTCTTCGAAAGACAAGAAACCGTCGAAG-CCATCGAGTAGTCGTGGTG 121
Query 60 GAGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCG 119
|| |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 122 GAATCCGAACTCTTTCCGATCTTAACCGTAGGTCTGGTCCTGACTCCGACAGTGATTCCG 181
Query 120 ATGGACCTCAAGAATACTACACCGGCGGTGA-AAGAAGTGGTATGCTT-GTTCAAGATCC 177
|||| || |||||||||||||| || ||||| || |||||||||| || |||||||||||
Sbjct 182 ATGGTCCACAAGAATACTACACAGGTGGTGAGAA-AAGTGGTATG-TTAGTTCAAGATCC 239
Query 178 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGCTGTGGA 237
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 240 ATCGAAAAAAGATGATGTTGATGAGATATTTAATCAAGCTAGACAACTAGGAGCTGTAGA 299
Query 238 AGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAGTTTCACTGGAACTGGGAGATCGCTCTC 297
||||||||||||||| ||| ||||||| |||||||||||||||||||| |||| ||| ||
Sbjct 300 AGGACCTCTTGAGCCACCTCCGAGTTCCAGGAGTTTCACTGGAACTGGTAGATTGCTTTC 359
Query 298 TGGTGAAAATATGTCTACTGGTCTTCAACAGCCTGAGCCTGTGGTTCACAACATTGTTTT 357
|||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 360 TGGTGAAAATGTGCCTACTGGTAATCAACAGCCTGAGCCTGTTGTTCACAACATTGTTTT 419
Query 358 CTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 417
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGGTCTAATGGTTTCACTATTGATGATGGTCCTTTGAGGAAATTGGATGATCCTGAGAA 479
Query 418 TGCATTGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCAGA 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGCATCGTTTCTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGAGCCTGCCGA 539
Query 478 TAAAAGAGCCCCGGTTCATGTCAATTTGATGCGAAGGGAAGAGAAATGCCCTGAAAGACA 537
|| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 540 TAGAAGAGCTCCGGTTCATGTCAACTTGATGCGAAAGGAAGAGAAATGCCCTGAAAGACA 599
Query 538 GAAACGTAGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAGCAATGATGGCAG 597
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 600 GAAACGTAGGGTTTCATTTCAGGGTGTTGGAAGAACTCTAGGTGGTAGCAATGAAGGTAG 659
Query 598 CGGAAGTAGCTCCCCTGTTGCTCCAGACTCCGCTGCTATTCCCATCCAAACCAACGAAAC 657
|||||||||||| ||||| ||||||||||||||| | ||||||||||||||| ||| |
Sbjct 660 CGGAAGTAGCTCACCTGTGGCTCCAGACTCCGCTCCCATTCCCATCCAAACC---GAA-C 715
Query 658 CGTATCAGCACCACCTCCAAGTCTTGTAATAGATGAAACTATTCCAATCACATCGATACA 717
| | |||||| ||| ||||||||||||||||||||| |||||| ||||||||||||
Sbjct 716 C--A---GCACCATCTCAAAGTCTTGTAATAGATGAAACCGTTCCAACCACATCGATACA 770
Query 718 GCTTAGACTAGCGGATGGGACACGTCTGGTGGGTAAGTTCAATCACCATCACACGGTCAA 777
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 771 GCTTAGACTAGCGGATGGGACACGTCTGGTGGCTAAGTTCAATCACCATCACACGGTCAA 830
Query 778 CGACATTCGCGGTTTCATTGACTCCTCTCGTCCTGGAGC-TCCGGTGAACTACCAGCTTC 836
|||||||||||||||||||||||| ||||| |||||||| || | |||||||||||||||
Sbjct 831 CGACATTCGCGGTTTCATTGACTCATCTCGACCTGGAGCCTC-GTTGAACTACCAGCTTC 889
Query 837 AGACAATGGGATTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATCGAAGAAGCTG 896
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 890 AGACAATGGGGTTCCCACCTAAGCCTTTGACTGATCTCACTCAGACCATTGAAGAAGCTG 949
Query 897 GTCTGGCCAACTCTGTCGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTTTG-TTCTTT 955
|||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 950 GTCTCGCCAACTCTGTTGTTCTTCAGAAATTCTAGAAAATTCTACAAGGTGTGGTTCTTT 1009
Query 956 TTTGTCTTTCTATATGTATTATTATGAGATCTCCATAACTGTTATAGTAACCAGATCTTT 1015
|| |||| |||||||| ||||| ||||||| | |||||||||| |||||||||| |||||
Sbjct 1010 TT-GTCTATCTATATGCATTATAATGAGATTTTCATAACTGTTGTAGTAACCAGGTCTTT 1068
Query 1016 AAAATGTAAGTTACTTCTTCGATT-TGTATACGCAGCATAA 1055
|||||||||||||||||||| | | ||||||| ||||||||
Sbjct 1069 AAAATGTAAGTTACTTCTTC-ACTCTGTATACTCAGCATAA 1108
> AT4G22150.1 | Symbols: PUX3 | plant UBX domain-containing protein
3 | chr4:11731138-11732901 REVERSE LENGTH=1339
Length=1339
Score = 527 bits (285), Expect = 9e-149
Identities = 502/603 (83%), Gaps = 30/603 (5%)
Strand=Plus/Plus
Query 7 GAGA-ATGTCTTCGAAAGACAAGAAACCGGCG-AGACCATCGACTAGTCG---TGGTGG- 60
|||| ||||| || || |||||||||| || || ||| | | | |||| ||||||
Sbjct 292 GAGATATGTCGTCTAAGGACAAGAAACTATCGAAG-CCAACAAGTGGTCGTACTGGTGGT 350
Query 61 AGTCCGAACTCTTTCCGATCTTAATCGTAGGTCTGGTCCAGATTCCGACAGTGATTCCGA 120
| |||| || ||||||||||| || || || || | || |||||||| ||||| |||||
Sbjct 351 A-TCCGTACACTTTCCGATCTGAACCGAAGATCAGAACCTGATTCCGATAGTGACTCCGA 409
Query 121 TGGACCTCAAGAATACTACACCGGCGGTGAAAGAAGTGGTATGCTTGTTCAAGAT-C--C 177
||||||||||||||||| |||||| || |||| |||||||||||||||||||||| | |
Sbjct 410 TGGACCTCAAGAATACTTCACCGGTGGCGAAAAAAGTGGTATGCTTGTTCAAGATCCTAC 469
Query 178 -ATCG-A--AAAA-A-GATGATGTTGATGAGATATTTAATCAAGCTAGACAATTAGGAGC 231
| | | |||| | ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 470 AAAAGAACCAAAACACGATGATGTTGATGAGATATTTAATCAAGCAAGACAGCTAGGAGC 529
Query 232 TGTGGAAGGACCTCTTGAGCCTCCTTCGAGTTCAAGGAG-TTTCACTGGAACTGGGAGAT 290
|||||||||||||||||||| |||||||||||| || || ||| || ||||| || ||||
Sbjct 530 TGTGGAAGGACCTCTTGAGCATCCTTCGAGTTCTAGAAGCTTT-ACAGGAACAGGAAGAT 588
Query 291 CGCTCTCTGGTGAAAATATGTCTACTGG-TCTTCAACAGCCTGAGCCTGTGGTTCACAAC 349
||| ||||| |||| | || | || || |||||||||||||||||||||| |||||||
Sbjct 589 TGCTTTCTGGAGAAAGTGTGCCAAC-GGCTCTTCAACAGCCTGAGCCTGTGATTCACAAT 647
Query 350 ATTGTTTTCTGGTCTAATGGATTCACTATAGATGATGGTCCTTTGAGGAAATTGGATGAT 409
||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 648 ATTATTTTCTGGTCTAATGGATTCACTGTAGATGATGGACCTTTGAGGAAGTTGGATGAT 707
Query 410 CCTGAGAATGCATTGTTT-CTCGAGAGCATTCGAAAGTCTGAGTGCCCGAAAGAGCTTGA 468
|| |||||||| || ||| || || ||||||||||||||||| || ||||||||||||||
Sbjct 708 CCAGAGAATGC-TTCTTTTCTTGATAGCATTCGAAAGTCTGAATGTCCGAAAGAGCTTGA 766
Query 469 GCCTGCAGATAAAAGAGCCCCGGTTCATGTCAAT-TTGATGCGAAGGGAAGAGAAATGCC 527
||||| ||||||||||| || || ||||| ||| || ||| |||| || ||||| ||||
Sbjct 767 GCCTGTTGATAAAAGAGCTCCTGTACATGTTAATCTT-ATGAGAAGAGATGAGAAGTGCC 825
Query 528 CTGAAAGACAGAAACG-T-AGGGTTTCATTTCAAGGTGTTGGAAGAACTCTAGGTGGTAG 585
|||| | | ||||| | | | ||||||||||||||| |||||||| |||||||||||| |
Sbjct 826 CTGAGA-A-AGAAAAGCTTAAGGTTTCATTTCAAGGAGTTGGAAGGACTCTAGGTGGT-G 882
Query 586 CAA 588
|||
Sbjct 883 CAA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51741171410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5