BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490081
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein 4... 3398 0.0
AT4G04221.1 | Symbols: | other RNA | chr4:2035159-2036370 REVE... 601 1e-170
AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 154 4e-36
> AT4G04220.1 | Symbols: AtRLP46, RLP46 | receptor like protein
46 | chr4:2033427-2035946 FORWARD LENGTH=2436
Length=2436
Score = 3398 bits (1840), Expect = 0.0
Identities = 2265/2464 (92%), Gaps = 53/2464 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAAGCCATGttttctctcctgcttccttttctttttcttcttcttcttcttcATA 60
|||||||||| |||| ||||||||||||| | | ||||||||| ||||||||||
Sbjct 1 ATGTCGAAGCAATGTCTTCTCTCCTGCTT-C----C----TCTTCTTCTGCTTCTTCATA 51
Query 61 CCAAAACTATCTTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAAC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 CCACAACTATCTTTCTCTTGTCCACAAGATCAAAGACAATCCCTTCTCGAGTTCAAGAAC 111
Query 121 ATGCTGATTCACAACATCAAGGAAAACTCCACAGCCGTTGGAGGTTTAGGGACATGGAGG 180
|||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||||
Sbjct 112 TTGCTGATTCACAACATCAAGGACAACTACACAGCCTTTGAAGAATTAGGGACATGGAGG 171
Query 181 CCAAACTCAGATTGCTGCAAATGGCTACGCGTGAGATGTAACGCTAGTTCGCCTTCCAAA 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 172 CCAAACTCAGATTGCTGCAAATGGCTACGCGTGACATGTAACGCTAGTTCGCCTTCCAAA 231
Query 241 GAAGTGATAGACCTGAATCTAAGCTAT-CTCATCCTCTCTGGCACAGTTAGTTCAAGCAT 299
||||||||||||||||||||| || | ||||||| | ||||| |||||||||||||||
Sbjct 232 GAAGTGATAGACCTGAATCTATTCT-TGCTCATCCCCCCTGGCTTAGTTAGTTCAAGCAT 290
Query 300 TTTGAGACC-AGTTCTGCGTATAAACTCTCTTGTTTCGCTTGATGTCTCGTCTAATT-CT 357
||||||||| | ||||||||||||||||||||||| |||||||||||| | ||| |
Sbjct 291 TTTGAGACCGA-TTCTGCGTATAAACTCTCTTGTTGGGCTTGATGTCTCATTTAACAAC- 348
Query 358 ATACAAGGAGAGATTCCTGGAGATGCATTTGTGAACTTGACCAGCTTGATCTCTCTTGAC 417
||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 349 ATACAAGGAGAGATTCCTGGATATGCGTTTGTGAACTTGACCAGCTTGATTTCTCTTGAC 408
Query 418 ATGAGTTCTAATAGATTTAACGGCTCAATTCCTCATGAATTGTTCTCCTTGAAAAATCTT 477
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 409 ATGTGTTGTAATAGATTTAACGGCTCAATTCCTCATGAATTGTTCTCCTTGACAAATCTT 468
Query 478 CAGCGTCTTGACTTAAGCAGGAATGTTATTGGCGGTACATTGAGTGGTGACATCAAAGAG 537
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 469 CAGCGTCTTGATTTAAGCAGGAATGTTATTGGCGGTACGTTGAGTGGTGACATCAAAGAG 528
Query 538 CTAAAGAATCTGCAGGAACTGATCTTAGATGAGAATCTCATTGGAGGAGAGATTCCTCCA 597
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 529 CTCAAGAATCTGCAGGAACTGATCTTAGATGAGAATCTCATTGGAGGAGCGATTCCTTCA 588
Query 598 GAAATAGGTAGTCTTGTCGAACTACGGACGCTGACATTGAGGCAGAACATGTTCAATGGT 657
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 589 GAAATAGGTAGTCTTGTCGAACTACTGACGCTGACCTTGAGGCAGAACATGTTCAATAGT 648
Query 658 TCTATACCGTCGTCTGTTTCACGGTTAACGAAGCTCAAAACGATTGATCTTCAGAACAAT 717
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 TCCATACCGTCGTCTGTATCACGGTTAACGAAGCTCAAAACGATAGATCTTCAGAACAAT 708
Query 718 TCCTTGTCTTCTGATATTCCAGACGATATTGGAAACTTAGTCAATCTATCAACTCTATCT 777
| |||||||||| | |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 709 TTCTTGTCTTCTAAGATTCCAGATGATATTGGAAACTTGGTCAATCTATCAACTCTGTCC 768
Query 778 TTGAGCATGAACAAGTTGTGGGGCGGAATTCCAACGTCGATTCAGAATCTGAAAAATCTT 837
||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||
Sbjct 769 TTGAGCATGAACAAGTTGTCGGGTGGAATTCCATCGTCGATTCATAATCTGAAAAATCTT 828
Query 838 GAAACCATTCAGCTTGAGAATAACAATGGCTTGTCAGGTGAGATTCCCACAGCTTGGTTG 897
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 829 GAAACCCTTCAGCTTGAGAATAACAATGGCTTGTCAGGTGAGATTCCCGCAGCTTGGTTG 888
Query 898 TTTGGTCTTGAGAAGCTGAAGGTACTGCGGCTCGGAGGAAACAAG---CTCCAATGGAAC 954
||||||||| |||||||||||||||| ||||| | ||||||||| ||||||||||||
Sbjct 889 TTTGGTCTTCAGAAGCTGAAGGTACTACGGCTTGAAGGAAACAACAAACTCCAATGGAAC 948
Query 955 AACAATGGTTATGTCTTTCCACAGTTTAAGTTAACTGACCTGTCACTTAGATCTTGTGGC 1014
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 949 AATAATGGTTATGTCTTTCCACAGTTTAAGTTAACACATCTGTCACTTAGATCTTGTGGC 1008
Query 1015 TTAAAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAACTCTTGTTTACTTGGATTTG 1074
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1009 TTAGAAGGGAATATTCCGGATTGGCTCAAGAATCAAACAGCTCTTGTTTACTTGGATTTG 1068
Query 1075 AGCATTAACAGACTGGAAGGAAGTTTCCCGAAATGGCTAGCTGATTTGACAATCC-AATT 1133
|||||||||||||| |||||||| ||||| ||||||||||||||| ||| |||| ||
Sbjct 1069 AGCATTAACAGACTCGAAGGAAGATTCCCAAAATGGCTAGCTGATCTGAAAATCAGAAA- 1127
Query 1134 CATAATTTTATCAGACAACAGACTCTCAGGCTCACTGCCTCCAAATTTGTTTCAGTC-TC 1192
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1128 CATAACTTTGTCAGACAACAGACTCACAGGCTCACTGCCTCCAAATTTGTTTCAG-CGTC 1186
Query 1193 CGAGCTTATCCTATCTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGAAAAGA 1252
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1187 CGAGCTTATACTATCTTGTACTATCAAGGAACAACTTTTCTGGTCAGATCCCTGATACGA 1246
Query 1253 TTGTC-ATATCACTGGTCATGGTACTCATGCTGTCTGAAAACAACTTCTCAGGATCAGTA 1311
||| | | ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1247 TTGGCGA-ATCACAGGTCATGGTACTCATGTTGTCTGAAAACAACTTCTCAGGATCAGTA 1305
Query 1312 CCAAAGTCTATTACAAAGATCTT-TTTGCTGGAGTTGTTGGACTTGTCAAAGAATAGATT 1370
||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||
Sbjct 1306 CCAAAGTCTATTACAAAGATCCCCTTT-CTCAAGTTGTTGGACTTGTCAAAGAATCGATT 1364
Query 1371 ATCAGGTGAATTCCCGAGGTTCCGTCCCGAGTCAAACCTTGTGTGGCTCGATATATCTTC 1430
|||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1365 ATCAGGTGAATTCCCGAGGTTCCGCCCCGAGTCATACCTTGAGTGGCTCGATATATCTTC 1424
Query 1431 CAACGAGTTCTCCGGGGATGTTCCAGCTTACTTTGGGGGATCCATCAGTATGCTATTAAT 1490
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 1425 GAACGAGTTCTCTGGGGATGTTCCAGCTTACTTTGGAGGATCCACCAGTATGCTCTTAAT 1484
Query 1491 GAGTCAGAACAACTTCAGCGGCGAATTCCCTCAGAACTTCAGAAATCTCTCACGTCTGAT 1550
|||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1485 GAGTCAGAACAATTTCAGCGGCGAATTTCCTCAGAACTTCAGAAATCTTTCATATCTGAT 1544
Query 1551 CCGTCTTGATCTCCATGACAACAAAATCTCTGGAGA-ATTTGCGAGTTTAACCTCCC-GA 1608
|||||||||||||||||||||||||||||||||| | | | |||||||||| ||||| |
Sbjct 1545 CCGTCTTGATCTCCATGACAACAAAATCTCTGGA-ACAGTCGCGAGTTTAATCTCCCAG- 1602
Query 1609 TTATCTTGTTCTCTAGAGGTACTTAGCCTGAGAAACAATTCCCTCGAAGGTTCAATCCCA 1668
||||||| |||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1603 TTATCTTCTTCTGTAGAGGTTCTTAGCCTGAGAAACAATTCCCTCAAAGGTTCAATCCCA 1662
Query 1669 GAAGGCATATCAAATCTCACAAGCCTCCAGGTCTTGGATCTCTCTCAGAACAATCTTGAT 1728
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1663 GAAGGCATATCAAATCTCACAAGCCTTAAGGTCTTGGATCTCTCTGAGAACAATCTTGAT 1722
Query 1729 GGGTATCTCCCTTCGTCTCTTGGGAATCTTACATCCATGATAAAATCTCCTGAGAGCTCA 1788
|| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1723 GGATATCTCCCTTCATCTCTTGGGAATCTTACATGCATGATAAAATCTCCTGAGCCCTCA 1782
Query 1789 TCT-TCGGCTAAGCGACCCT-TTTACAGCTTCAATACCGACTT-C--------GAAACAT 1837
|| | | ||| || |||| ||| ||||| | |||||||| | | |||| ||
Sbjct 1783 GCTAT-GACTATCCGTCCCTATTT-CAGCTCCTATACCGACATACCCAACATAGAAAGAT 1840
Query 1838 TAATCAAGATCAAATCACAAGATATATTTAGTCTTGTAGTGAACTGGAAGAATTCAAAAC 1897
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 TAATCGAGATCGAATCAGAAGATATATTTAGTCTTGTAGTGAACTGGAAGAATTCAAAAC 1900
Query 1898 AAGTTCTTTTCGACAGAAACTTCTACCTCTACACTCTCTTAGATCTCTCCAAGAACAAGC 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 AAGTTCTTTTCGACAGAAACTTCTACCTCTACACTCTCTTAGATCTCTCCAAGAACAAGC 1960
Query 1958 TACACGGAGAAATCCCAACTTCTTTAGGCAATCTCAAAAGACTAAAGGTTTTAAA-CGTT 2016
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1961 TACACGGAGAAATCCCAACTTCTTTAGGCAATCTCAAAAGCCTAAAGGTTTTAAATC-TT 2019
Query 2017 TCCAACAATGAGTTCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAG 2076
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 TCCAACAACGAGTTCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAG 2079
Query 2077 AGCGTAGACCTTTCACACAACAACCTCAAAGGCGAAATCCCGAAAACGTTATCCAAGCTA 2136
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2080 AGCTTAGACCTTTCACACAACAACCTCACTGGCGAAATCCCGAAAACGTTATCCAAGCTA 2139
Query 2137 AGCGAGCTGAATACTTTGGATTTGAGTAACAACAAGCTTACAGGTAGAATCCCTGAAAGT 2196
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 2140 AGCGAGCTGAATACATTGGATTTGCGTAACAACAAGCTTAAAGGTAGAATCCCTGAAAGT 2199
Query 2197 CCTCAACTAGACAGATTGAACAATCCAAACATTTACGCGAACAACAGCGGAATCTGTGGA 2256
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200 CCTCAGCTAGACAGATTGAACAATCCAAACATTTACGCGAACAACAGCGGAATCTGTGGA 2259
Query 2257 ATGCAAATCCAAGTACCATGCTCTCCTACACAGACCAAGCAGCCAGCTGAGgaaaaagaa 2316
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2260 ATGCAAATCCAAGTACCATGCTTTCCTACACAGACCAAGCAGCCAGCTGAGGAAAAAGAA 2319
Query 2317 gaagaaga-agaagaagacaaagaagaGGAAACAATGTTTTCATGGAAAGCTGCAGTCAT 2375
|||||||| | ||||||| | ||||| || |||| ||||||||||| || |||| |||
Sbjct 2320 GAAGAAGACA-AAGAAGA-A--GAAGA--AA-CAATTTTTTCATGGAATGCAGCAGCCAT 2372
Query 2376 AGGTTGTTCTTGTGGATTTCTTATAGCAGTTGTATTCATGTCATACAATGGGATATGGAA 2435
|||||| ||||||||||| |||||||||||||| |||||||| ||||||| | |||||||
Sbjct 2373 AGGTTGCTCTTGTGGATTCCTTATAGCAGTTGTGTTCATGTCTTACAATGAGTTATGGAA 2432
Query 2436 GTAA 2439
||||
Sbjct 2433 GTAA 2436
> AT4G04221.1 | Symbols: | other RNA | chr4:2035159-2036370 REVERSE
LENGTH=613
Length=613
Score = 601 bits (325), Expect = 1e-170
Identities = 350/362 (97%), Gaps = 2/362 (1%)
Strand=Plus/Minus
Query 1923 CCTCTACACTCTCTTAGATCTCTCCAAGAACAAGCTACACGGAGAAATCCCAACTTCTTT 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CCTCTACACTCTCTTAGATCTCTCCAAGAACAAGCTACACGGAGAAATCCCAACTTCTTT 392
Query 1983 AGGCAATCTCAAAAGACTAAAGGTTTTAAA-CGTTTCCAACAATGAGTTCTCTGGATTGA 2041
||||||||||||||| |||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 391 AGGCAATCTCAAAAGCCTAAAGGTTTTAAATC-TTTCCAACAACGAGTTCTCTGGATTGA 333
Query 2042 TCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAGAGCGTAGACCTTTCACACAACAACC 2101
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 332 TCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAGAGCTTAGACCTTTCACACAACAACC 273
Query 2102 TCAAAGGCGAAATCCCGAAAACGTTATCCAAGCTAAGCGAGCTGAATACTTTGGATTTGA 2161
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 272 TCACTGGCGAAATCCCGAAAACGTTATCCAAGCTAAGCGAGCTGAATACATTGGATTTGC 213
Query 2162 GTAACAACAAGCTTACAGGTAGAATCCCTGAAAGTCCTCAACTAGACAGATTGAACAATC 2221
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 212 GTAACAACAAGCTTAAAGGTAGAATCCCTGAAAGTCCTCAGCTAGACAGATTGAACAATC 153
Query 2222 CAAACATTTACGCGAACAACAGCGGAATCTGTGGAATGCAAATCCAAGTACCATGCTCTC 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 152 CAAACATTTACGCGAACAACAGCGGAATCTGTGGAATGCAAATCCAAGTACCATGCTTTC 93
Query 2282 CT 2283
||
Sbjct 92 CT 91
Score = 206 bits (111), Expect = 1e-51
Identities = 147/164 (90%), Gaps = 4/164 (2%)
Strand=Plus/Minus
Query 1655 AAGGTTCAATCCCAGAAGGCATATCAAATCTCACAAGCCTCCAGGTCTTGGATCTCTCTC 1714
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 613 AAGGTTCAATCCCAGAAGGCATATCAAATCTCACAAGCCTTAAGGTCTTGGATCTCTCTG 554
Query 1715 AGAACAATCTTGATGGGTATCTCCCTTCGTCTCTTGGGAATCTTACATCCATGATAAAAT 1774
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 553 AGAACAATCTTGATGGATATCTCCCTTCATCTCTTGGGAATCTTACATGCATGATAAAAT 494
Query 1775 CTCCTGAGAGCTCATCT-TCGGCTAAGCGACCCT-TTTACAGCT 1816
|||||||| |||| || | | ||| || |||| ||| |||||
Sbjct 493 CTCCTGAGCCCTCAGCTAT-GACTATCCGTCCCTATTT-CAGCT 452
> AT3G03370.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: DegP protease 7 (TAIR:AT3G03380.1). |
chr3:797254-799148 REVERSE LENGTH=1171
Length=1171
Score = 154 bits (83), Expect = 4e-36
Identities = 146/174 (84%), Gaps = 14/174 (8%)
Strand=Plus/Minus
Query 2030 TCTCTGGATTGATCCCACAAAGTTTTGGAGATCTTGAGAAGGTAGAGAGCGTAGACCTTT 2089
||||||||||||||||||||||||||||| |||||||||||||||| | | |||
Sbjct 814 TCTCTGGATTGATCCCACAAAGTTTTGGAAATCTTGAGAAGGTAGA---C-----C-TTT 764
Query 2090 CACACAACAACCTCAAAGGCGAAATCCCG-A-AAACGTTATCCAAGCTAAGCGAGCTGAA 2147
||||||| |||||| ||||||||||||| | |||| | ||||||||| || ||||||||
Sbjct 763 CACACAATAACCTCTCAGGCGAAATCCCGCAGAAAC-T-ATCCAAGCTCAGTGAGCTGAA 706
Query 2148 TACTTTGGATTTGAGTAACAACAAGCTTACAGGTAGAATCCCTGAAAGTCCTCA 2201
| | |||| ||||| |||||||| |||| ||||||||||| ||| ||||||||
Sbjct 705 TG-TATGGAGTTGAGCAACAACAAACTTATAGGTAGAATCCATGAGAGTCCTCA 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121133915085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5