BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490084
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04320.1 | Symbols: | malonyl-CoA decarboxylase family prot... 2346 0.0
> AT4G04320.1 | Symbols: | malonyl-CoA decarboxylase family protein
| chr4:2113404-2116693 FORWARD LENGTH=1886
Length=1886
Score = 2346 bits (1270), Expect = 0.0
Identities = 1600/1753 (91%), Gaps = 47/1753 (3%)
Strand=Plus/Plus
Query 1 ATGAGCAAGAAAAATCTAGCGATTCTGCTGCGTGCTAGAATGAAATCCAACAATCCCACC 60
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct 162 ATGAGCAAGAAAAATCTAGCGATTCTGTTGCGTGCTAGAATGAGATCCAACAATCCCTCC 221
Query 61 AAATTTTCCCTCTCTCAATTTCCT---GAAATTCAATCTAATCCTCAAGAGAATCAATCT 117
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 222 AAATTTTCCCTCTCTCAATTTCCTAAGGAAATTCAATCTAATCCTCAAGAGAATCATTCT 281
Query 118 GA-AGATCACATTGTACAAAATTCCAGTGAAGGAATTGGGAATTCTAGTGATTTTGGTAA 176
| |||||||||||| ||||||| | | | | |||||||||||
Sbjct 282 -AGAGATCACATTGTGCAAAATT-C-----------T----A----A-TGATTTTGGTAC 319
Query 177 CACAGGAAGGGTATATGATGTAGTTCGAGAAACAATGCACTCGGCTATTTCAGCGAGTAA 236
||| |||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct 320 CACTGGAAGGGTTTATGATGTTGTTCGAGAGACAATGCACTCAGCTATCTCAGCTAGTAA 379
Query 237 AACCGGTGTATTAGACATTACTCTTAGTGATTTTCAAGAGGGTTACTTAAGCCTTTCGCT 296
||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 380 AACTGGTGTATTAGACATTACTCTTAATGATTTTCAAGAGGGTTACTTTAGCCTTTCGCT 439
Query 297 TGAAGACCGTGAGAAATTACTTCTTGTATTAGCCAAAGAATATGATGTTAACCGGGAGCA 356
||||||||| ||||| ||||| ||||| |||||||| || |||||||||||||| |||||
Sbjct 440 TGAAGACCGCGAGAAGTTACTGCTTGTTTTAGCCAAGGAGTATGATGTTAACCGAGAGCA 499
Query 357 AGTTCAAGAACTTGTTAAGCAATATCTTGGACTTGAAAATCCAGCTA--G-TGATGATAA 413
||| | |||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 500 AGTCCGAGAACTTGTTAAGCAATATCTTGGACTTGAAACTCCAGCTAGTGATGATGATAA 559
Query 414 GGATGTTTTATCTTCTGTTTTCTATCGCATTGAGCGGAATTTGAGACATACTCTTAGGCC 473
|| | |||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||
Sbjct 560 GGGGGCTTTATCTTCTGTTTTCTATCGCATTGAGAGGAATCTGAGGCATGCTCTTAGGCC 619
Query 474 AACATATGAAGTTCTATTTGAGAGGTTGAATACCCACCCAGGAGGGTTGAGATTTTTGTC 533
||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 620 AACATATGAAGTTTTATTTGAGAGGTTGAATACACATCCTGGAGGGTTGAGATTTTTGTC 679
Query 534 CATCCTTCGTGCTGATCTTCTATCGATACTCACAAAAGAAAACTCGCCGTCTCTT-CGAA 592
|||||| || ||||||||||| ||||||||| ||||||| ||| |||||||| || ||||
Sbjct 680 CATCCTCCGAGCTGATCTTCTGTCGATACTCTCAAAAGAGAACACGCCGTCT-TTGCGAA 738
Query 593 CACTAGATTCCTTTCTAAAGGAGAAACTCGGTATGTGGCTTAGTCCTGCCACTTTAGAGC 652
|| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CATTAGATTCTTTTCTGAAGGAGAAACTCGGTATGTGGCTTAGTCCTGCCACTTTAGAGC 798
Query 653 TTCATCAAATTACTTGGGATGACCCTGCTTCATTGCTTGAGAAAATTGTCGCATACGAGG 712
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 799 TTCATCAAATTACTTGGGATGATCCTGCTTCATTGCTTGAGAAAATTGTTGCATATGAGG 858
Query 713 CGGTACATCCTATCAGCAACCTCTTGGATCTTAAAAGAAGATTGGGAATAGGCCGTCGAT 772
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CGGTGCATCCAATCAGCAACCTCTTGGATCTTAAAAGAAGATTGGGAATAGGCCGTCGAT 918
Query 773 GCTTTGGATATTTTCATCCATCTATTCCTGGTGAACCGCTTATTTTTATCGAAGTTGCTC 832
||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||
Sbjct 919 GCTTTGGATATTTTCATCCATCTGTTCCTGGTGAGCCACTTATTTTTATAGAAGTTGCTC 978
Query 833 TTATGGAAACCGTTGCTCAGACAATTCAGGAAGTTTTGTGGGACAATCCTCCCATACCAG 892
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TTATGGAGACTGTTGCTCAGACAATTCAGGAAGTTTTGTGGGACAATCCTCCCATACCAG 1038
Query 893 AGAACCAAGCAACATGCGCTTTATTTTACTCGATTTCTTCAACTCAGCCTGGCTTAGCTG 952
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1039 AGAACCAAGCAACATGCGCTTTATTTTACTCTATTTCTTCAACTCAGCCTGGCTTAGCTG 1098
Query 953 GAATAAACCTCGGGAAATTTCTGATCAAACGAGTGATCACGTTGGTGAAAAAAGACATGC 1012
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1099 GGATAAACCTCGGAAAATTTCTGATCAAACGAGTGATTACGTTGGTGAAAAAAGACATGC 1158
Query 1013 CACATGTTTCTACATTTGCAACACTTAGCCCCATTCCTGGATTCATGCAATGGCTCCTCT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CACATGTTTCTACATTTGCAACACTTAGCCCCATTCCTGGATTCATGCAATGGCTCCTCT 1218
Query 1073 CAAAATTATCGTCTCAGTCAAGATTTGCTGAAGATGAGCGTGGTACACAGAGCAATTCGC 1132
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CGAAGTTATCATCTCAGTCAAGATTTGCTGAAGATGAGCGTGGTACACAGAGCAATTCGC 1278
Query 1133 CATT-ATCTACTTTTAGTGAGAAAGTATTACTACCAGAAGAGGAACAAGCCCTCATGAGT 1191
| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1279 C-TTCATCTACGTTTAGTGAGAAAGTATTACTACCAGAAGAGGAACATGCCCTCATGACT 1337
Query 1192 CTATCAGATGATTCTCCATCCGGTAGCAACGGCATGGAAGTTCTATTGAATTTGCTATCA 1251
||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1338 CTATCAGATGAATCTTCATCCGGTAGCAACGGTATGGAAGTTCTGTTGAATTTGCTATCA 1397
Query 1252 GTAAAGAACTGCGACTGGGCTACTTCTCCTCGCCTATTGCCAGTTTTAGAACCTATTCTT 1311
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1398 GTAAAGAACTGCGATTGGGCTACTTCGCCTCGCCTATTACCAGTTTTAGAACCTATTCTT 1457
Query 1312 ATGCGGTTATGTGCTAGGTACCTCTTGCAAGAGAAGAAAAGAGGAAAAGCTTTAGACTCT 1371
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1458 ATGCGGTTATGTGCTAGGTACCTCTTGCAAGAGAAGAAGAGAGGAAAAGCTTTAGACTCT 1517
Query 1372 GTTGCTAACTTCCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAATTGGATGGCGGAT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GTTGCTAACTTCCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAATTGGATGGCGGAT 1577
Query 1432 CGATCAGAGAAAGGTATTCATCAAAGTGGAGGCATCATGGTTAACTATGTCTATAGGTTA 1491
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1578 CGATCAGAGAAAGGTATTCGTCAAAGTGGAGGCATTATGGTAAACTATGTCTATAGGTTA 1637
Query 1492 GAGAATATCGAAGACTATGCTCAATCGTATTTTGGGTCGGGCAAAATTCATGCCTCTCCC 1551
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1638 GAGAATATCGAAGACTATGCTCAATCGTATTTTGGGTCGGGCAAAATCCATGCCTCTCCC 1697
Query 1552 GGTATCCATTCCCGTCTCTAAGTAACTCCGGAAATCAAATTGGGTTTTC-TCAGAAG-GT 1609
|||||||||||||||||||| ||||||||| ||| |||| ||||||| || || |
Sbjct 1698 GGTATCCATTCCCGTCTCTAGGTAACTCCGCAAAGAAAATCGGGTTTTGATC-GATTTGC 1756
Query 1610 AAGGTTTTAGAAT-TAAGATATCAAAGCGTGAGAATAACGCAAGCACAATGGTATGT--- 1665
| ||| | || |||| ||||||| | || || |||| | ||||||||||||||
Sbjct 1757 A-GGTAAAAAAAACTAAGGTATCAAAACCTGGGAGTAACATA-GCACAATGGTATGTATA 1814
Query 1666 -GTATGTACAAACGGTCTT-ATGTGTGTATCCTCTCGAGACT--ATATATGTGAATGTGA 1721
||||||||||||||| || | |||||||| ||||| ||||| |||||| |||||||||
Sbjct 1815 TGTATGTACAAACGGT-TTCAAGTGTGTATACTCTCAAGACTCTATATATATGAATGTGA 1873
Query 1722 TTCAAATAGATAT 1734
||| || ||||||
Sbjct 1874 TTCGAAGAGATAT 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5