BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490089
Length=3063
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04350.1 | Symbols: EMB2369 | tRNA synthetase class I (I, L,... 4903 0.0
> AT4G04350.1 | Symbols: EMB2369 | tRNA synthetase class I (I,
L, M and V) family protein | chr4:2128090-2133150 FORWARD LENGTH=3081
Length=3081
Score = 4903 bits (2655), Expect = 0.0
Identities = 2939/3075 (96%), Gaps = 23/3075 (1%)
Strand=Plus/Plus
Query 1 TCGTCTCCGGCaaaaaaaaaCCAGAATGAG--CTC-TCATCAAATCCTCCAATTTCGCTC 57
||||||||||| ||| |||||||||||||| ||| |||||||||||||||| |||| ||
Sbjct 15 TCGTCTCCGGCGAAACAAAACCAGAATGAGCTCTCATCATCAAATCCTCCAAATTCGTTC 74
Query 58 TGACCCATTTGTACTTTCACACTGTTGCCGCCATACACACCTCACCAGCTCTCTAACGCT 117
|||||||||||| || ||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 75 TGACCCATTTGTTCTATCACACTGTTGCCGCCACACACGCCTCACCAGCTCTCTTACGCT 134
Query 118 TCAATCTCCTCTAAAGCAGCCTTTTTCCGGTCTTCGTTTCCGGTGGCGTCGCTCTAATCA 177
||||||||||||||||||||| ||||| |||| | |||||| ||||| |||||| |||
Sbjct 135 TCAATCTCCTCTAAAGCAGCCCTTTTCATGTCTCCCTTTCCGTTGGCGCCGCTCTTATCG 194
Query 178 CGGCGGAGTCAGGAGCTCAACGACGGAGGCTCA-GAGTAACAAAGAAGAAGCTTTGGTGT 236
|||||||||||||||||||||||||||| |||| | ||| |||| |||||||||||||||
Sbjct 195 CGGCGGAGTCAGGAGCTCAACGACGGAGACTCATG-GTAGCAAAAAAGAAGCTTTGGTGT 253
Query 237 CGGAAACAGCGACGACGA-CGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAG 295
||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CGGAAACGGCGACTAC-ATCGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAA 312
Query 296 CCCAAGTGGCAACGTTATTGGGAAGATAACCGAACTTTT-CGGACACCAGACGATGTCGA 354
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 313 CCCAAGTGGCAACGTTATTGGGAAGATAACCGAA-TTTTCCGGACACCAGACGATGTTGA 371
Query 355 TACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATATCCAAGTGGAGCAGGATT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATATCCAAGTGGAGCAGGATT 431
Query 415 ACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGAAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 432 ACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGTAT 491
Query 475 GCAAGGTTACAATGT-TCTGCATCCTATGGGATGGGATGCTTTTGGATTGCCTGCAGAAC 533
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 492 GCAAGGTTACAATGTGT-TGCATCCTATGGGTTGGGATGCTTTTGGATTGCCTGCTGAAC 550
Query 534 AATATGCTATTGAGACAGGAACCCATCCGAAAACTACGACATTAAAGAACATTGACCGCT 593
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 551 AATATGCTATTGAGACAGGAACCCATCCGAAAACTACGACATTGAAGAACATTGACCGCT 610
Query 594 TTCGTTTACAGCTCAAATCACTGGGCTTCTCATACGATTGGGACCGTGAGCTTTCTACAA 653
|||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 611 TTCGATTGCAGCTCAAATCATTGGGCTTCTCATACGATTGGGACCGTGAACTTTCTACAA 670
Query 654 CAGAGCCAGACTATTATAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAGAGGTT 713
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 671 CAGAGCCAGACTACTACAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAAAGGTT 730
Query 714 TGGCATATCAGGCTGAAGTACCCGTCAATTGGTGCCCAGCTCTTGGTACTGTTTTGGCCA 773
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 731 TGGCATATCAGGCTGAAGTACCGGTCAATTGGTGCCCGGCTCTTGGTACTGTTTTGGCCA 790
Query 774 ATGAGGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGCCGA 833
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ATGAAGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGCCGA 850
Query 834 TGAGGCAATGGATGCTGAAGATTACTGCGTACGCTGATCGTCTTCTGGAAGATTTAGACG 893
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 851 TGAGGCAATGGATGCTGAAGATTACTGCGTACGCTGATCGTCTTCTAGAAGATTTGGACG 910
Query 894 AGCTCGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAGATCCGAAG 953
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AGCTTGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAGATCCGAAG 970
Query 954 GAGCTGAATTGAATTTTTCATTTCTTGATGGCGAAGGCCGAGAAACCGACAAAAAGATTA 1013
||||||| ||||| |||||| |||||||||| |||||||||||||| |||||| ||||||
Sbjct 971 GAGCTGAGTTGAACTTTTCAATTCTTGATGGGGAAGGCCGAGAAACTGACAAAGAGATTA 1030
Query 1014 CAGTTTACACCACGAGGCCAGATACACTTTTTGGAGCAACTTACATGGTTGTGGCACCAG 1073
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CAGTGTACACCACGAGGCCAGATACACTTTTTGGAGCAACTTACATGGTTGTGGCACCAG 1090
Query 1074 AACATCATTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAGTTGAGGAATACA 1133
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AGCATCAGTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAGTTGAGGAATACA 1150
Query 1134 AAGATTTCGCTTCGAGAAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACAG 1193
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1151 AAGATTTCGCTTCGAGGAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACGG 1210
Query 1194 GCGTATTCACGGGATGTTATGCAAAAAATCCAGCTAATGGTGATGCTATTCCCATATGGG 1253
||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1211 GCGTATTTACGGGATGTTATGCGAAAAATCCAGCTAATGGAGATGCTATTCCCATATGGG 1270
Query 1254 TAGCTGACTATGTTCTAGCAAGTTATGGAACCGGAGCAATCATGGCAGTCCCAGCTCATG 1313
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1271 TAGCTGATTATGTTCTAGCTAGTTATGGAACCGGAGCAATCATGGCGGTCCCAGCTCATG 1330
Query 1314 ATACTCGGGATAATGAGTTCGCGTTGAAGTATAACATTCCGATCAAGTGGGTAGTGAAAA 1373
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 1331 ATACTCGGGATAATGAGTTTGCGTTGAAGTATAACATTCCCATCAAGTGGGTAGTGAGAA 1390
Query 1374 ATGAGGCAAATTCAAGTGATGATGCCAAGCAGGTTTATCCCGGATTGGGCATAATTGAAA 1433
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1391 ATGAGGCAAATTCAAGTGATGATGCTAAGCAGGTTTATCCCGGATTGGGCATTATTGAAA 1450
Query 1434 ATTCATCAAGTTCAGAGACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGGTT 1493
|||| |||| || ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1451 ATTCTTCAACTTTAGAAACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGCTT 1510
Query 1494 TAAAAGTTATTGAATGGGCTGAGAGAACCGGAAATGGAAAGAAAAAGGTAAATTACAAGT 1553
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1511 TAAAAGTTATTGAATGGGCTGAGAGAACTGGCAATGGAAAGAAAAAGGTAAATTACAAGT 1570
Query 1554 TAAGGGATTGGCTATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTT 1613
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 TGAGGGATTGGCTATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTT 1630
Query 1614 TGGATGAGTCTGGTGAAACTATTGCTGTTTCAGAATCTGAACTGCCACTCACTTTGCCTG 1673
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1631 TGGATGAGTCTGGTGAAACTATTGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTG 1690
Query 1674 AGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCAT 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 AGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCAT 1750
Query 1734 GGGTGAACATC-GTAGATCCCTT-AACAGGAAAACCTGCCAAAAGAGAAACAAGCACTAT 1791
||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1751 GGGTGAACA-CTGTAGAT-CCTTCAACAGGAAAACCTGCCAAAAGAGAAACAAGCACTAT 1808
Query 1792 GCCACAATGGGCTGGGTCTTGCTGGTACTATCTGAGATTCATGGACCCGAAAAACCCTGA 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 GCCACAATGGGCTGGGTCTTGCTGGTACTATCTGAGATTCATGGACCCGAAAAACCCTGA 1868
Query 1852 AGCATTAGTTGACAAGGAAAAAGAAAAATACTGGAGCCCAGTAGATGTATATGTCGGTGG 1911
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1869 AGCATTAGTTGACAAGGAAAAAGAAAAATACTGGAGCCCAGTAGATGTATATGTTGGTGG 1928
Query 1912 TGCTGAACATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGGTACTTTATGA 1971
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 TGCTGAGCATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGGTACTTTATGA 1988
Query 1972 CATTGGTGTTGTGTCTACAAAAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCT 2031
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 CATTGGTGTTGTGTCTACGAAAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCT 2048
Query 2032 TGGGGAAGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATAA 2091
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TGGGGAAGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATAC 2108
Query 2092 TGAAGAACGGTTAAATGAACATCAACAAGTGACAATCCCGGAAGAAAAAGTTATGAAGTC 2151
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2109 TGAAGAACGGTTAAATGAACATCAACAAGTGACAATCCCGGAAGAAAAAGTTATCAAGTC 2168
Query 2152 CGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAA 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 CGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAA 2228
Query 2212 AATGAGCAAAAGTAGAGGAAATGTCGTAAATCCTGATGATGTTGTGTTAGAGCATGGTGC 2271
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2229 AATGAGCAAAAGTAGAGGAAATGTCGTAAATCCTGATGATGTTGTATTAGAGTATGGTGC 2288
Query 2272 AGATTCTCTACGTCTCTATGAGATGTTCATGGGACCATTTAGGGACTCAAAAACTTGGAA 2331
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 AGATTCTCTACGTTTGTATGAGATGTTCATGGGACCATTTAGGGACTCAAAAACTTGGAA 2348
Query 2332 CACGAGTGGGATTGAAGGTGTGCATCGTTTCTTGGCAAGAACATGGAGACTAGTCATCGG 2391
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2349 CACGAGTGGGATTGAAGGTGTGCATCGTTTCTTGGCAAGAACTTGGAGACTAGTCATTGG 2408
Query 2392 TTTGCCTCAATCCGACGGTTCTTTCAAAGATGGAACCATAGTGACTGATGATGAACCAAC 2451
||||||||| || || ||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 2409 TTTGCCTCAGTCTGATGGTTCTTTCAAAGATGGAACCTTAGTAACTGATGACGAACCAAC 2468
Query 2452 CCTTGAACAACTCCGAACTCTTCATAAATGCATAGCTAAGGTGACAGAGGAAATTGAGAG 2511
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 2469 CCTTGAACAACTCCGAACTCTTCATAAATGCATTGCAAAGGTGACAGAGGAAATCGAGAG 2528
Query 2512 TACGCGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGTG 2571
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2529 TACACGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGTG 2588
Query 2572 GAATAATCAACCTAGAAGAATCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCACC 2631
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2589 GAATAATCAACCTAGAGGAATCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCGCC 2648
Query 2632 TCACATGGCTGAAGAGCTTTGGTCACGGTTAGGCCATCCGAATTCTCTGGCCTATGAAAG 2691
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2649 TCACATGGCTGAAGAGCTTTGGTCGCGGTTAGGCCATCCAAATTCTCTGGCCTATGAAAG 2708
Query 2692 GTTCCCTAAGGCAAACCCAGATTACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGAT 2751
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2709 CTTCCCTAAGGCAAACCCGGATTACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGAT 2768
Query 2752 AAACGGCAAAACAAGAGGCACCATAGAGGTTGAAGAAGGATGTTCTGAAGATGATGCTTT 2811
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2769 AAACGGCAAGACAAGAGGCACCATAGAGGTTGAAGAAGGATGCTCTGAAGATGATGCTTT 2828
Query 2812 TGTTCTAGCTTTACAGGACGAGAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAA 2871
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2829 TGTTCTAGCTTCACAGGACGACAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAA 2888
Query 2872 GCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGATCGGACTAATGTCAAGGT 2931
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2889 GCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGACCGGACTAATGTCAAGGT 2948
Query 2932 CGCCACAAAGTAGGATTTAGAAAGaaaaaaaaaCAATTACAGAACCTGTCAAATGAACAA 2991
| | |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 2949 CACTACAAAGTAGGATTTAGAAAGAAGAAA---CAATTACAAAACCTGTCAAATGAACAA 3005
Query 2992 AATTTATTTCTCTATTGAATAGTTTCCATTATATAGAAAAAGATTCTTCTAG---CAAAA 3048
||||| | |||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 3006 AATTT-TATCTCTATTGAG-AGTTTCCATTATATAGAAAAAGATTCTTTTAGAAGCAAAA 3063
Query 3049 GATCTGTTCTTAGAT 3063
|||||||||||||||
Sbjct 3064 GATCTGTTCTTAGAT 3078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152306838948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5