BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490093
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04460.1 | Symbols: | Saposin-like aspartyl protease family... 2712 0.0
AT1G11910.1 | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | ... 379 4e-104
AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv... 320 3e-86
> AT4G04460.1 | Symbols: | Saposin-like aspartyl protease family
protein | chr4:2224551-2227874 FORWARD LENGTH=1712
Length=1712
Score = 2712 bits (1468), Expect = 0.0
Identities = 1634/1714 (95%), Gaps = 11/1714 (1%)
Strand=Plus/Plus
Query 1 ATTCTTCTTCGTCTTGTTAAGCTTATAAGAATCTCTACTCACATTTTCTCTGTAAAAATG 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCTTCTTCGTCTTGTTAAGCTTTTAAGAATCTCTACTCACATTTTCTCTGTAAAAATG 60
Query 61 GGAACTAGGTTCCAATCATTCTTGCTCGTGTTCTTGCTTTCATGTTTAATCCTCATATCC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAACTAGGTTCCAATCATTCTTGCTCGTGTTCTTGCTTTCATGTTTAATCCTCATATCA 120
Query 121 ACTGCCTTGTGTGAGCGGAAA-GGTGATGGGACGATTAGAATTGGATTGAAGAAGAGGAA 179
||||||| |||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 121 ACTGCCTCGTGTGAGC-GAAATGGTGATGGAACGATTAGAATTGGATTGAAGAAGAGGAA 179
Query 180 ACTAGACCGGAGCAACAGGCTAGCTTCTCAGCtttttttGAAAAACCGAGGG--TC-TTG 236
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 ACTAGACCGGAGCAACAGGCTAGCTTCTCAGCTTTTTTTGAAAAACCGAGGGTCTCATTG 239
Query 237 GTCTCCCAAAGACTATTTTCGCCTGAACGATGCAAATGCGGATATGGTTCCGCTGAAAAA 296
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 GTCTCCCAAACACTATTTTCGCCTGAACGATGAAAATGCGGATATGGTTCCGCTGAAAAA 299
Query 297 TTATTTGGATGCTCAATACTATGGTGACATTACCATTGGTACTCCACCTCAGAAGTTCAC 356
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CTATTTGGATGCTCAATACTATGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCAC 359
Query 357 TGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACTTATC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 TGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATC 419
Query 417 GGTTGCTTGTTATTTCCACTCCAAGTACAAGGCTAGCCAGTCATCGTCATACAGAAAGAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GGTTGCTTGTTATTTCCACTCCAAGTACAAGGCTAGCCAGTCATCGTCATATAGAAAGAA 479
Query 477 CGGGAAACCCGCGTCAATCCGCTATGGGACAGGTGCTATTTCTGGTTACTTTAGCAATGA 536
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CGGAAAACCCGCGTCTATCCGCTATGGGACGGGTGCTATTTCTGGTTACTTTAGCAATGA 539
Query 537 TGATGTTAAAGTTGGTGATATCGTTGTCAAGGAGCAGGAATTCATAGAGGCTACTACTGA 596
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 540 TGATGTTAAAGTTGGTGATATTGTTGTGAAAGAGCAGGAATTCATAGAGGCTACTAGTGA 599
Query 597 GCCTGGTATAACCTTCTTGCTGGCAAAGTTTGATGGTATCCTCGGTTTGGGTTTCAAAGA 656
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCTGGTATAACATTCTTGCTAGCAAAGTTTGATGGTATCCTCGGTTTGGGTTTCAAAGA 659
Query 657 GATTTCTGTCGGAAATTCAACTCCGGTTTGGTATAACATGGTAGAAAAAGGTTTGGTTAA 716
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 GATTTCTGTAGGAAACTCAACTCCGGTTTGGTATAACATGGTAGAAAAAGGTTTAGTTAA 719
Query 717 GG-ACCCAGTCTTTTCGTTCTGGCTTAACCGTAACCCGCAAGATCAAGAAGGTGGTGAGA 775
|| ||| | | ||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 720 GGAACCGA-TTTTTTCGTTCTGGCTTAACCGTAACCCGAAAGATCCAGAAGGCGGTGAGA 778
Query 776 TTGTTTTTGGCGGAGTCGACCCAAAACACTTCAAAGGAGAGCATACTTATGTTCCTGTGA 835
||||||| || ||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 779 TTGTTTTCGGTGGAGTCGACCCGAAGCACTTCAAAGGAGAGCATACTTTTGTTCCTGTGA 838
Query 836 CACATAAAGGTTACTGGCAGTTTGACATGGGTGATGTCCAAATTGCTGGCAAACCTACAG 895
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 839 CACATAAAGGTTACTGGCAGTTTGACATGGGTGATCTCCAAATTGCTGGCAAACCAACCG 898
Query 896 GATATTGTGCTAAAGGTTGTTCTGCTATTGCTGATTCCGGAACTTCTCTGCTCACCGGTC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GATATTGTGCTAAAGGTTGTTCTGCTATTGCTGATTCCGGAACTTCTCTGCTCACCGGTC 958
Query 956 CATCGACTGTCATCACGATGATCAATCATGCGATAGGAGCACAAGGAATCGTAAGCCGTG 1015
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 959 CATCGACTGTCATCACGATGATCAATCACGCGATAGGAGCACAAGGAATTGTAAGCCGTG 1018
Query 1016 AATGCAAGGCTGTGGTGGATCAGTACGGAAAAACAATGTTGAATTCTCTTCTAGCTCAGG 1075
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1019 AATGCAAGGCCGTGGTGGATCAATACGGAAAAACCATGTTGAATTCTCTTCTAGCTCAGG 1078
Query 1076 AGGATCCGAAGAAGGTATGCTCACAAATTGGAGTCTGCGCTTATGATGGTACACACAGTG 1135
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1079 AGGATCCGAAGAAAGTATGCTCACAAATTGGAGTCTGCGCTTATGATGGTACACAGAGTG 1138
Query 1136 TGAGTATGGACATCCAGTCAGTTGTAGATGATGAAACATCGGGTCTTTTAAACCAAGCGA 1195
||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1139 TGAGTATGGGGATCCAGTCAGTTGTAGACGATGGAACATCGGGTCTTTTAAACCAAGCGA 1198
Query 1196 TGTGCAGTGCTTGCGAAATGGCAGCCGTGTGGATGGAGAGCGAATTGACTCAGAATCAAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTGCAGTGCTTGCGAAATGGCAGCCGTGTGGATGGAGAGCGAATTGACTCAGAATCAAA 1258
Query 1256 CACAAGAACGCATACTCGCTTATGCTGCTGAGCTATGTAACCATATACCAACTAAAAACC 1315
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1259 CACAAGAACGCATACTCGCTTATGCTGCTGAGCTATGTGACCATATACCAACCCAAAACC 1318
Query 1316 AACAATCAGCAGTGGACTGTGAGAGGGTTTCGTCGATGCCTATAGTCTCATTCTCAATTG 1375
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 AACAATCAGCAGTGGACTGTGGGAGGGTTTCGTCGATGCCTATAGTCACATTCTCAATTG 1378
Query 1376 GCGGCAGAACCTTTGATCTCTCTCCTCAAGATTATATATTCAAGATTGGGGACGGAGTTG 1435
| ||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||
Sbjct 1379 GTGGCAGAAGCTTTGATCTAACTCCTCAAGACTATATATTCAAGATCGGGGAAGGAGTTG 1438
Query 1436 AGTCTCAGTGCACTAGCGGTTTCACGGCAATGGATATTCCTCCGCCTCGTGGACCTCTCT 1495
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1439 AGTCTCAGTGCACCAGCGGTTTCACGGCAATGGATATTGCTCCGCCTCGTGGACCTCTCT 1498
Query 1496 GGATCTTGGGTGATATCTTCATGGGACCATATCACACTGTGTTCGATTACGGGAAAGCAA 1555
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 1499 GGATCTTGGGTGATATCTTCATGGGACCATACCACACAGTGTTCGATTATGGGAAAGGAA 1558
Query 1556 GAGTTGGATTCGCCAAAGCTGCTTAAACAAGACCTCTTCTTTAAGACCCT--TTTTT-AT 1612
|||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||
Sbjct 1559 GAGTTGGATTCGCCAAAGCTGCTTAAACAATATCTCTTCTTTAATACCCTCGTTTTTTAT 1618
Query 1613 ATAATGTTTGTGAATGTGTTTGTAATAACTTAAA-CATATTGCTATTCTAGAATGGTATC 1671
|| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1619 ATGATGTTTGTGAATGTGTTTGTAATAACTTAAAACATATTGCTATCCTAGAATGGTATC 1678
Query 1672 ATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1705
||||||||||||||||||||||||||||||||||
Sbjct 1679 ATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1712
> AT1G11910.1 | Symbols: APA1, ATAPA1 | aspartic proteinase A1
| chr1:4016784-4020983 REVERSE LENGTH=1970
Length=1970
Score = 379 bits (205), Expect = 4e-104
Identities = 684/908 (75%), Gaps = 62/908 (7%)
Strand=Plus/Plus
Query 272 ATGCGGATATGGTTCCGCTGAAAAATTATTTGGATGCTCAATACTATGGTGACATTACCA 331
|||| ||| | ||| ||| || |||||| | |||||||| ||||||||||| || |||
Sbjct 317 ATGCTGATGTTGTTGTGCTTAAGAATTATCTAGATGCTCAGTACTATGGTGAGATCGCCA 376
Query 332 TTGGTACTCCACCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGA 391
||||||||||||||||||||||||||||| | ||||| ||||| ||||| || ||||||
Sbjct 377 TTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGG 436
Query 392 TACCATC-TACTAAATGTTACTTATCGGTTGCTTGT-TATTTCCACTCC-AAGTACAAG- 447
| ||||| | | ||||| || || || |||| ||| | || | | ||| || ||||||
Sbjct 437 TGCCATCAT-CAAAATGCTATTTCTCACTTGCATGTCTCTTGC-A-TCCCAAATACAAGT 493
Query 448 -G-CTAGC-CA-GTCATCGTCATACAGAAAGAACGGGAAACCCGC-GTCAATCCGCTATG 502
| || | || | || | | || |||| ||| || ||| | || | |||| | || |
Sbjct 494 CGTCTCGTTCAAG-CA-CAT-ATG-AGAA-GAATGGAAAAGCTGCCG-CAATTCATTACG 547
Query 503 GGACAGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATCGTTG 562
| || || || ||| |||||| ||||| ||||||| ||| | |||||| ||| | ||||
Sbjct 548 GCACTGGAGCAATTGCTGGTTTTTTTAGTAATGATGCTGTCACAGTTGGCGATTTAGTTG 607
Query 563 TCAAGGAGCAGGAATTCATAGAGGCTACTACTGAGCCTGGTATAACCTTC-TTGCTGGC- 620
||||||| ||||| || || ||||| || | |||||||||||||| || ||| | ||
Sbjct 608 TCAAGGATCAGGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTG-TAGCT 666
Query 621 AAAGTTTGATGGTATCCTCGGT-TTGGGTTTCAAAGAGATTTCTGTCGGAAATTCAACTC 679
||| |||||||||||||| ||| |||| || ||| ||||| ||||| ||||| | |||
Sbjct 667 AAA-TTTGATGGTATCCTTGGTCTTGGATTCCAA-GAGATCTCTGTTGGAAAAGCTGCTC 724
Query 680 CGGTTTGGTATAACATGGTAGAAA-AAGGT-TTGGTTAAGGACCCAGTCTTTTCGTTCTG 737
| |||||||| |||||| | || |||| || | ||||| || || ||||| || ||
Sbjct 725 CTGTTTGGTACAACATGCTC-AAGCAAGGCCTTA-TCAAGGAGCCGGTTTTTTCATTTTG 782
Query 738 GCTTAACCGTAACCCGCA-A-GATCAAGAAGGTGGTGAGA-TTGTTTTTGGCGGAGTCGA 794
|||||||||||| ||| | || ||||||||||||| | |||| ||||| || || ||
Sbjct 783 GCTTAACCGTAAT--GCAGATGAAGAAGAAGGTGGTGA-ACTTGTATTTGGAGGTGTTGA 839
Query 795 CCCAAAACACTTCAAAGG-AGAGCATACTTATGTTCCTGTGACACATAAAGGT-TACTGG 852
||||| || ||||| || | | ||||| ||||||||||||||||| ||||| ||||||
Sbjct 840 TCCAAATCATTTCAAGGGCAAA-CATACATATGTTCCTGTGACACA-AAAGGGCTACTGG 897
Query 853 CAGTTTGACATGGGTGATGTCCAAATTG-CTG-GCAAACCTACAGGATAT-TGTGCTAAA 909
|||||||||||||||||||| | |||| | | ||| || || || | | |||| |||
Sbjct 898 CAGTTTGACATGGGTGATGTTCTTATTGGCGGTGCAC-CC-ACTGGGT-TCTGTG--AAA 952
Query 910 G-GT-TGTTCTGCTATTGCTGATTCCGGAACTTCTCTGCTCACCGGTCCATCGACTGTCA 967
| | |||||||| || || ||||| || || ||| |||| |||||||| ||||| | |
Sbjct 953 GTGGCTGTTCTGCGATAGCAGATTCTGGTACATCTTTGCTTGCCGGTCCAACGACTATAA 1012
Query 968 TCACGATGATCAATCATGCGATAGGAGCA-CAAGGAATCGTAAGCCGTGAA-TGCAAGGC 1025
|||| ||||| || ||||| || |||||| | ||| | || |||| | | |||||| |
Sbjct 1013 TCACCATGATAAACCATGCTATTGGAGCAGCT-GGAGTTGTTAGCCA-GCAGTGCAAGAC 1070
Query 1026 TGTGGTGGATCAGTACGGAAAAACAATGTTGAATTCT-CTTCTAG-CTCAGGAGG-ATCC 1082
||| |||||||| ||||| | || || ||| ||| | ||| | | || || | | ||
Sbjct 1071 TGTTGTGGATCAATACGGGCAGACCATTTTGGATT-TACTTTT-GTCTGAG-ACCCAACC 1127
Query 1083 GAAGAAGGTATGCTCACAAATTGGAGTCTGCG--CTTATGATGGTACACACAGTGTGAGT 1140
|||||| | ||||| || ||||| |||| | ||| ||||||||| | |||| |||
Sbjct 1128 GAAGAAAATCTGCTCGCAGATTGG--TCTGTGTACTTTTGATGGTACCCGTGGTGTCAGT 1185
Query 1141 ATGGACAT 1148
|||| |||
Sbjct 1186 ATGGGCAT 1193
> AT4G04470.1 | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr4:2227661-2229280 REVERSE LENGTH=929
Length=929
Score = 320 bits (173), Expect = 3e-86
Identities = 201/214 (94%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 1496 GGATCTTGGGTGATATCTTCATGGGACCATATCACACTGTGTTCGATTACGGGAAAGCAA 1555
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||
Sbjct 929 GGATCTTGGGTGATATCTTCATGGGACCATACCACACAGTGTTCGATTATGGGAAAGGAA 870
Query 1556 GAGTTGGATTCGCCAAAGCTGCTTAAACAAGACCTCTTCTTTAAGA-CC-C-TTTTTTAT 1612
|||||||||||||||||||||||||||||| | ||||||||||| | || | ||||||||
Sbjct 869 GAGTTGGATTCGCCAAAGCTGCTTAAACAATATCTCTTCTTTAATACCCTCGTTTTTTAT 810
Query 1613 ATAATGTTTGTGAATGTGTTTGTAATAACTT-AAACATATTGCTATTCTAGAATGGTATC 1671
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 809 ATGATGTTTGTGAATGTGTTTGTAATAACTTAAAACATATTGCTATCCTAGAATGGTATC 750
Query 1672 ATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 1705
||||||||||||||||||||||||||||||||||
Sbjct 749 ATCTTAATACAGATTTTTATTTGGTTTCAGAGCT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84286715055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5