BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490095
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04480.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1812 0.0
> AT4G04480.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: flower, pollen tube; EXPRESSED DURING:
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast
hits to 78 proteins in 10 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845
FORWARD LENGTH=1197
Length=1197
Score = 1812 bits (981), Expect = 0.0
Identities = 1132/1203 (94%), Gaps = 18/1203 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCATTGCAGGTTTCAAGATTAGttctttcgtcttcttcttct--t-c---ttct 54
||||||||||||||||| |||||||||||||||||||| ||||||||| | | ||
Sbjct 1 ATGGCTTCATTGCAGGTATCAAGATTAGTTCTTTCGTCATCTTCTTCTAGTACAAGACCT 60
Query 55 AAAGCAGCAGTTTCAATCCCGAAACTACCGAAATTTCACGTCTCCGTTCCGAAAATACCG 114
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 AAAGCAGCAGTTTCAATCCCGAAGCTACCGAAATTTCACGTCTCGGTTCCGAAAATACCG 120
Query 115 ACTTTATCGGTTAAAGAACCGAGCTTTGAGTTTGTAGAAAGTCTTCCTCTTTCATTGAAA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ACTTTATCGGTTAAAGAACCGAGCTTTGAGTTTGTAGAAAGTCTTCCTCTTTCGTTGAAA 180
Query 175 CAGAGGAGGGGCTCTGAGTCGATCCAAAGGGA-GCGTCTTAATGCAGTTCTTGAAGAAGT 233
|| | ||| || ||||| || ||||||| | | ||||| ||||| ||||||||||||||
Sbjct 181 CAAAAGAGAGGTTCTGATTCTATCCAAA-GAACTCGTCTCAATGCGGTTCTTGAAGAAGT 239
Query 234 TATGGATAGGATTGAGATGCACAAGAACATTGGAGATCAACGTAACAATTGGAACTCTCT 293
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 240 TATGGATAGGATTGAGATGCACAAGAACATCGGAGATCAACGTAACAATTGGAACTCTTT 299
Query 294 ATTGCTCAATTCTGTCAACATGATTACTCTCACCGCAGCTTTGATGGCCGGAATAGCCTC 353
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 300 ACTGCTCAATTCTGTCAACATGATTACTCTCACTGCCGCTTTGATGGCCGGAATAGCCTC 359
Query 354 GGTTAATGGTCACGGTGTAGATTCTGTGACCGCGGTGAAGATAGCTTCAACGGTGTTGTT 413
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 360 GGTTAACGGTCACGGTGTAGATTCTGTAACCGCTGTGAAGATAGCTTCAACGGTGTTGTT 419
Query 414 AACATCTGCAACGGGTTTCGCTGCCTTGATGAGCAAGATTCAACCTTCGCAGCTAGCTGA 473
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACATCTGCGACGGGTTTTGCTGCCTTGATGAGCAAGATTCAACCTTCGCAGCTAGCTGA 479
Query 474 AGAACAGAGGAACGCGACGAGGCTGTTCAAGAAGCTGAGAGTCGAAATCGAAAAGTTTCT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 AGAACAGAGGAACGCGACGAGGCTGTTCAAGAAGCTGAGAGTCGAAATCGAAATGTTTCT 539
Query 534 GAGAGAAAACGAGGAGATCGAAGAAGAAGATGTGAAGGAAGCGATAAAGAAAGTGTTGTC 593
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 540 GAGAGAAAACGAGGAGATCGAAGAAGAAGATGTTAAGGAAGTGATAAAGAGAGTGTTGTC 599
Query 594 TCTAGACAAAGCTTACCCTCTTCCTCTGATCGGAACAATGCTTGAGAAGTTTCCGGAAGA 653
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TCTAGATAAAGCTTATCCTCTTCCTCTGATCGGAACAATGCTCGAGAAGTTTCCGGAAGA 659
Query 654 GTTCAAACCGGCGACTTGGTGGCCTGAAAACAAAAGG-GAAAA-CCCTAAAAGC--GTTC 709
||| ||||||||||||||||||||||||||||| || ||||| |||||||| | || |
Sbjct 660 GTTTAAACCGGCGACTTGGTGGCCTGAAAACAA--GGAGAAAAACCCTAAAA-CTAGT-C 715
Query 710 TTGCGAATGGGTGGAGCCAAGAGCTCCAGACCGAGATGAGAGAAGTTGCTCGTGTGGTGA 769
|||||||||| ||||| |||||||| || | ||||||||||||||||||| ||||||||
Sbjct 716 TTGCGAATGGATGGAGTCAAGAGCTTGAGGCGGAGATGAGAGAAGTTGCTCATGTGGTGA 775
Query 770 AGAGCAGAGACGCAGAAGAGTATGAGAAATTAGGTAACGTGGCGTTGAAGCTAAACCGGT 829
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 776 AGAGCAGAGACGCAGAAGAGTATGAGAAATTAGGTCACGTGGCGTTGAAGCTAAACCGGT 835
Query 830 TCTTGGCTATCTCTGGACCAGTTTTAACCGGAGTTTCTGCTGTAAGCTCTGT-TTTCATC 888
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 836 TCTTGGCTATCTCTGGACCAGTTTTAACCGGAGTTTCTGCTGTAAGCTCTGTCTTT-ATC 894
Query 889 GGTCAAGATTCCGGTTTAGCCGGAATCGTGGCAATGACTTGTGCTTCTTTGGCTGCGGTT 948
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 895 GGTCAAGATTCCGGTTTAGCTGGAATCGTGGCGATGACTTGTGCTTCTTTGGCTGCGGTT 954
Query 949 GTCAACACTTTAGAACATGGTGGTCAAGTGGGAATGGTGTTTGAGATGTATAGAAACTCA 1008
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GTCAACACTTTAGAGCATGGTGGTCAAGTGGGAATGGTGTTTGAGATGTATAGAAACTCA 1014
Query 1009 GCTGGATTCTTCTCTCTATTAGAAGAAACGATGAAATCGACAGAGAAGAGAGAGAACGGA 1068
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1015 GCTGGATTCTTCTCTCTATTAGAAGAAACTATGAAATCGACGGAGAAGAGAGAGAACGGA 1074
Query 1069 CAAGTGTTTGAGACAAGAGTTGCGGTGAAGCTAGGGAGAAGCTTATCGGAACTGAGAGAT 1128
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 CAAGTGTTTGAGACAAGAGTTGCGGTGAAGCTAGGGAGAAGCTTATCAGAACTGAGAGAT 1134
Query 1129 CTCGCGAAAAGATCGAATCTCTCTCAGGTTGAGGCTAATGAATTCGCAAGCAAGCTTTTC 1188
|||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 1135 CTCGCGAAAAGATCGAATCTCTCTCAGGTTAAGGCCAAAGAATTCGCTAGCAAGCTTTTC 1194
Query 1189 TAG 1191
|||
Sbjct 1195 TAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5