BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490109
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04710.1 | Symbols: CPK22 | calcium-dependent protein kinase... 1862 0.0
AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase... 643 0.0
AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase... 468 8e-131
AT4G04700.1 | Symbols: CPK27 | calcium-dependent protein kinase... 446 4e-124
> AT4G04710.1 | Symbols: CPK22 | calcium-dependent protein kinase
22 | chr4:2389598-2392887 REVERSE LENGTH=1728
Length=1728
Score = 1862 bits (1008), Expect = 0.0
Identities = 1222/1324 (92%), Gaps = 20/1324 (2%)
Strand=Plus/Plus
Query 161 CAACAGGAAAGAGTTACGCTTGCAAATCCATACTTAAGAGAACTCTAAGCAGTGAAGAAG 220
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 129 CAA-AGGAAAGAGTTACGCTTGCAAATCCATACCTAAGAGAACTCTAAGCAGCGAAGAAG 187
Query 221 AGAAAGAAGCTGTCAAGACAGAGATTCAAATCATGGATCATGTTTCAGGAGACCCTAACA 280
| ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 188 AAAAAGAAGCTGTGAAGACAGAGATTCAAATCATGGATCATGTTTCAGGACAGCCTAACA 247
Query 281 TCGTACAGATCAAAGGTTCTTACGAGGATAAGAATTCTATACACATTGTAATGGAGTTTT 340
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || |
Sbjct 248 TCGTACAGATCAAAGGTTCCTACGAAGATAATAATTCTATACACATTGTAATGGAATTGT 307
Query 341 GTGGTGGTGGTGAGTTATTCGACAAGATTGATGCTTTGGTCAAGTCTCATAGCTATTACT 400
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 308 GTGGTGGTGGTGAGTTATTCGACAAGATCGATGCTTTGGTCAAGTCTCATAGCTATTACT 367
Query 401 CTGAGAAAGATGCTGCTGGAATCTTTAGGTCGATTGTGAATGCTGTGAAGATTTGTCATT 460
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 368 CTGAGAAAGATGCTGCTGGAATCTTTAGGTCTATTGTGAATGCTGTGAAGATTTGTCATT 427
Query 461 CTTTGGATGTTGTTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAACGATG 520
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 428 CTTTGGATGTCGTTCATCGTGATCTCAAGCCTGAGAACTTCTTGTTCTCTAGTAAAGATG 487
Query 521 AGAATGCTATGCTTAAAGCTATCGATTTCGGGTGTTCTGTTTACATCAAAGAAGGGCAAA 580
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 488 AGAATGCTATGCTTAAAGCTATCGATTTCGGGTGTTCTGTTTACATCAAAGAAGGGAAAA 547
Query 581 CTTTAGAGAGAATTGTTGGCAGTAAATACTACATTGCTCCTGAAGTATTAGAGGAAAGCT 640
|||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 548 CTTTTGAGAGAGTTGTTGGAAGTAAATACTACATTGCTCCTGAAGTATTAGAGGGAAGCT 607
Query 641 ATGGGAAGGAAATCGACATTTGGAGTGCTGGTGTTATATTATACATCTTACTCAGCGGCC 700
||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 608 ATGGGAAAGAAATCGACATTTGGAGTGCTGGTGTTATTTTATACATCCTACTGAGCGGCG 667
Query 701 TTAA-GCTAAAT-AC-CTTGAGATGTGTTCTTCTCTGTAATTGCGTCTACTCTT-GTATT 756
| | || | | | || || || || | || | ||||| |||||||||| |||||
Sbjct 668 T-ACCGCCATTTCAAACTGGA-AT-TGAA-T-CTAT--AATTGTGTCTACTCTTTGTATT 720
Query 757 GTAGATGCTGAGATTAAGGAAGGCAGGCTTGATTTTGAGAGCCATCCATGGCCTTTGATA 816
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 721 GTAGATGCTGAGATTAAAGAATGCAGGCTTGATTTTGAGAGCCAACCATGGCCTTTGATA 780
Query 817 ACTTTTAAAGCGAAGCACCTTATCGGGAAGATGCTCACCAAAAACCCGAAGGAACGAATC 876
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 TCTTTTAAAGCGAAGCACCTTATCGGGAAGATGCTCACCAAAAAACCGAAGGAACGAATC 840
Query 877 TCTGCTGCAGATGTTCTTGAACATCCTTGGATGAAGAGTGAAGCTCCAGATCAGCCTATT 936
|||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct 841 TCTGCTGCAGATGTTCTTGAACATCCATGGATGAAAAGCGAAGCTCCAGATAAGCCTATT 900
Query 937 GATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTA 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATAATGTTGTCTTATCACGTATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTT 960
Query 997 GCTCTTAAGGTTATCGCGGAGGGTCTATCAGAAGAGGAAATCAAAGGTCTTAAAACCATG 1056
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 961 GCTCTTAAGGTTATTGCGGAGGGTCTATCGGAAGAGGAGATCAAAGGTCTTAAAACCATG 1020
Query 1057 TTTGAGAATATGGACACCGACAATAGCGGGTCAATCACTTATGAAGAACTCAAAACCGGG 1116
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1021 TTTGAGAATATGGATATGGACAAAAGCGGGTCAATCACTTATGAAGAACTCAAAATGGGG 1080
Query 1117 CTGAATAGACATGGCTCTAAACTCTCTGAAACTGAAGTTAGGCAACTCATGGAAGCCG-- 1174
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1081 CTGAATAGACATGGCTCTAAACTCTCTGAGACTGAAGTTAAGCAACTCATGGAAGCAGTG 1140
Query 1175 ----CTGATGTTGACGGGAATGGAACAATAGACTACATAGAGTTTATCTCAGCAACGATG 1230
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1141 AGTGCTGATGTTGATGGGAATGGAACAATTGACTACATAGAGTTTATCTCAGCGACGATG 1200
Query 1231 CATAGACACAGATTGGAACGAGATGAACATTTGCACAAAGCATTCCAATACTTTGATAAG 1290
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 CATAGACACCGTTTGGAACGAGATGAACATTTATACAAAGCATTCCAATACTTTGATAAA 1260
Query 1291 GACA-ACAGCGGGTACATAACGAGGGATGAATTGGAGATAGCCATGAAGGAGCATGGTAT 1349
||| | |||||| ||||||||| ||| ||| |||||||||| ||||| |||||||||||
Sbjct 1261 GACGGA-AGCGGGCACATAACGAAGGAGGAAGTGGAGATAGCAATGAAAGAGCATGGTAT 1319
Query 1350 GGGAGATGAAGCTAATGCCAAAGATATAATATCAGAAGTCGATAAAAATAATGATGGAAA 1409
||||||||||||||||||||||||| | || |||||| |||||||||| || ||||||||
Sbjct 1320 GGGAGATGAAGCTAATGCCAAAGATTTGATTTCAGAATTCGATAAAAACAACGATGGAAA 1379
Query 1410 AATAGACTATGAGGAATTTTGTACTATGATGAGAAATGGCAACTTGCAGCCACAAGGGAA 1469
||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1380 AATAGACTATGAGGAGTTTTGTACGATGATGAGAAATGGCATCTTGCAACCACAAGGGAA 1439
Query 1470 ACTT 1473
||||
Sbjct 1440 ACTT 1443
Score = 156 bits (84), Expect = 7e-37
Identities = 113/126 (90%), Gaps = 6/126 (5%)
Strand=Plus/Plus
Query 6 TTGCTGCGGAAGTAAACCCCTAACAGCTTCTGATATCG-AT-GG----AAAGCAAGAGAC 59
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 9 TTGCTGCGGAAGTAAACCCCTAACAGCTTCTGATATCGTCTCGGATCAAAAGCAAGAGAC 68
Query 60 GATTCTTGGGAAGCCATTGGAAGACATCAAGAAGCTTTATAGCTTCGAAGGCGAACTAGG 119
|||||||||||||||||||||||| |||||||||| |||||||||| | |||||||||
Sbjct 69 GATTCTTGGGAAGCCATTGGAAGATATCAAGAAGCACTATAGCTTCGGTGACGAACTAGG 128
Query 120 CAAAGG 125
||||||
Sbjct 129 CAAAGG 134
> AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase
21 | chr4:2394458-2397759 REVERSE LENGTH=2083
Length=2083
Score = 643 bits (348), Expect = 0.0
Identities = 550/646 (85%), Gaps = 19/646 (3%)
Strand=Plus/Plus
Query 842 GGAAGATGCTCACCAAAAACCCGAAGGA-ACGAATCTCTGCTGCAGATGTTCTTGAACAT 900
|||||||||| |||||| ||||||| || ||||||| | |||||| | ||||||||||||
Sbjct 1075 GGAAGATGCTAACCAAAGACCCGAA-GAGACGAATCACGGCTGCACAGGTTCTTGAACAT 1133
Query 901 CCTTGGAT-GAA--GAGTGAAGCTCCAGATC-AGCCTATTGATAATGTTGTCTTATCACG 956
|||||||| || | | ||||| ||||| | |||||||||||| | ||| ||||| ||
Sbjct 1134 CCTTGGATCAAAGGGGGAGAAGCACCAGA-CAAGCCTATTGATAGCGCTGTGTTATCCCG 1192
Query 957 TATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTAGCTCTTAAGGTTATCGCGGA 1016
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1193 CATGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTAGCTCTAAAGGTTATCGCGGA 1252
Query 1017 GGGTCTATCAGAAGAGGAAATCAAAGGTCTTAAAACCATGTTTGAGAATATGGACACCGA 1076
| |||||||||||||||| || |||||||||||||||||||||| |||||| || |||||
Sbjct 1253 GAGTCTATCAGAAGAGGAGATTAAAGGTCTTAAAACCATGTTTGCGAATATAGATACCGA 1312
Query 1077 CAATAGCGGGTCAATCACTTATGAAGAACTCAAAACCGGGCTGAA-TAGACATGGCTCTA 1135
||| |||||| ||||||||||||||||||||||||| ||||| || ||||| ||| ||||
Sbjct 1313 CAAAAGCGGGACAATCACTTATGAAGAACTCAAAACTGGGCT-AACTAGACTTGGGTCTA 1371
Query 1136 AACTCTCTGAAACTGAAGTTAGGCAACTCATGGAAGCCGCTGATGTTGACGGGAATGGAA 1195
|||||| ||||||||||||| ||||||||||||||||||||| || || || |||||||
Sbjct 1372 GACTCTCGGAAACTGAAGTTAAGCAACTCATGGAAGCCGCTGACGTCGATGGTAATGGAA 1431
Query 1196 CAATAGACTACATA-GAGTTTATCTCAGCAACGATGCATAGACACAGATTGGAACGAGAT 1254
|||| |||||| || ||||||||||| || || ||||||||| ||| ||| || ||||||
Sbjct 1432 CAATCGACTAC-TACGAGTTTATCTCTGCGACAATGCATAGATACAAATTAGATCGAGAT 1490
Query 1255 GAACATTTGCACAAAGCATTCCAATACTTTGATAAGGACAACAGCGGGTACATAACGAGG 1314
|| ||| | |||||||||||||| |||||||||| |||||||||||| ||||||| ||
Sbjct 1491 GAGCATGTATACAAAGCATTCCAACACTTTGATAAAGACAACAGCGGGCACATAACTAGA 1550
Query 1315 GATGAATTGGAGA-TAGCCATGAAGGAGCATGGTATGGGAGATGAAGCTA--ATGCCAAA 1371
||||| ||||| | | ||||||||||| |||| |||||||||||||||| || | |||
Sbjct 1551 GATGAGTTGGAAAGT-GCCATGAAGGAATATGGAATGGGAGATGAAGCTAGCAT-C-AAA 1607
Query 1372 GATA-TAATATCAGAAGTCGATAAAAATAATGATGGAAAAATAGACTATGAGGAATTTTG 1430
|| | | ||||| ||||| |||| | |||||||||| |||| ||| ||| ||||||||
Sbjct 1608 GA-AGTTATATCCGAAGTTGATACCGACAATGATGGAAGAATAAACTTTGAAGAATTTTG 1666
Query 1431 TACTATGATGAGAAATGGCAACTTGCAGCCACAAGGGAAACTTCTT 1476
| |||||||||| ||||| | ||||||||| |||||||| |||
Sbjct 1667 CGCGATGATGAGAAGTGGCAGCACGCAGCCACAGGGGAAACTGCTT 1712
> AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase
23 | chr4:2403609-2408737 REVERSE LENGTH=2518
Length=2518
Score = 468 bits (253), Expect = 8e-131
Identities = 462/560 (83%), Gaps = 25/560 (4%)
Strand=Plus/Plus
Query 843 GAAGATGCTCACCAAAAACCCGAAGGA-ACGAATCTCTGCTGCAGATGTTCTTGAACATC 901
||||||||| ||| || |||| || || ||||||| |||||||| | |||||||||||||
Sbjct 1159 GAAGATGCTAACCGAAGACCCTAA-GAGACGAATCACTGCTGCACAAGTTCTTGAACATC 1217
Query 902 CTTGGAT-GAA--GAGTGAAGCTCCAGATCAGCCTATTGATAATGTTGTCTTATCACGTA 958
||||||| || | | ||||| || || |||||||||||| ||| ||||||||||
Sbjct 1218 CTTGGATCAAAGGGGGAGAAGCACCGGAAAAGCCTATTGATAGCACTGTGTTATCACGTA 1277
Query 959 TGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTAGCTCTTAAGGTTATCGCGGAGG 1018
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |
Sbjct 1278 TGAAGCAATTCCGAGCAATGAACAAGCTTAAGAAGCTAGCCCTAAAGGTTAGCGCGGTGA 1337
Query 1019 GTCTATCAGAAGAGGAAATCAAAGGTCTTAAAACCATGTTTGAGAATATGGACACCGACA 1078
||||||| ||||| || |||||||||||||||||| |||||| ||||||||| ||| | |
Sbjct 1338 GTCTATCCGAAGAAGAGATCAAAGGTCTTAAAACCTTGTTTGCGAATATGGATACCAATA 1397
Query 1079 -ATAGCGGGTCAATCACTTATGAAGAACTCAAAACCGGGCTGAA-TAGACATGGCTCTAA 1136
| |||||| |||||||||||||| ||||| |||| ||||| || ||||| | | ||||
Sbjct 1398 GA-AGCGGGACAATCACTTATGAACAACTCCAAACTGGGCT-AAGTAGACTTAGATCTAG 1455
Query 1137 ACTCTCTGAAACTGAAGTT-AGGCAACTCATGGAAGCCG-CTGATGTTGACGGGAATGGA 1194
||||||||||||||||||| || |||||| | ||||| | ||||||| || || ||||||
Sbjct 1456 ACTCTCTGAAACTGAAGTTCAG-CAACTCGTTGAAGC-GTCTGATGTGGATGGTAATGGA 1513
Query 1195 ACAATAGACTAC-ATAGAGTTTATCTCAGCAACGATGCATAGACACAGATTGGAACGA-G 1252
||||| |||||| || ||||||||||| || || ||||||||| ||| ||| | | | |
Sbjct 1514 ACAATTGACTACTAT-GAGTTTATCTCTGCGACAATGCATAGATACAAATTACATC-ACG 1571
Query 1253 ATGAACATTTGCACAAAGCATTCCAATACTTTGATAAGGACAACAGCGGGTACATAACGA 1312
|||| || | ||||||||||||||| |||| ||||| ||||| | ||| ||||||| |
Sbjct 1572 ATGAGCACGTACACAAAGCATTCCAACACTTAGATAAAGACAAAAATGGGCACATAACTA 1631
Query 1313 GGGATGAATTGGAGA-TAGCCATGAAGGAGCATGGTATGGGAGATGAAGCTA--ATGCCA 1369
||||||| ||||| | | ||||||||||| |||| |||||||||||||||| || | |
Sbjct 1632 GGGATGAGTTGGAAAGT-GCCATGAAGGAATATGGAATGGGAGATGAAGCTAGCAT-C-A 1688
Query 1370 AAGATA-TAATATCAGAAGT 1388
|||| | | ||||| |||||
Sbjct 1689 AAGA-AGTTATATCCGAAGT 1707
> AT4G04700.1 | Symbols: CPK27 | calcium-dependent protein kinase
27 | chr4:2385276-2387986 REVERSE LENGTH=1458
Length=1458
Score = 446 bits (241), Expect = 4e-124
Identities = 513/640 (80%), Gaps = 36/640 (6%)
Strand=Plus/Plus
Query 858 AAACCCGAAGGAACGAATCTCTGCTGCAGATGTTCTTGAACATCCTTGGATG-AAG-A-G 914
|||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||| | |
Sbjct 819 AAACCCCAAGGAACGAATCTCTGCTGCAGAGGTTCTTGGACATCCTTGGATGAAAGAAGG 878
Query 915 TGAAGCTCCAGATCAGCCTATTGATAATGTTGTCTTATCACGTATGAAGCA-ATTCCGAG 973
|||||| | ||| ||||||||||| ||||| ||||| ||| ||||| | ||| ||||
Sbjct 879 AGAAGCTTCGGATAAGCCTATTGATGGCGTTGTTTTATCCCGTTTGAAG-AGATTTCGAG 937
Query 974 CAAT--GAACAAGCTTAAGAAGCTAGCTCTTAAGGTTATCGC-GGAGGGTCTATCAGAAG 1030
|| ||||||| |||||||| ||| ||| ||| |||| || | | |||||||||||
Sbjct 938 --ATGCGAACAAGTTTAAGAAGGTAGTTCTAAAGTTTATTGCAGCA-AATCTATCAGAAG 994
Query 1031 AGGAAATCAAAGGTCTTAAAAC-CATGTTTGAG-AATATGGACACCGACAATAGCGGGTC 1088
||||||||||||||||||| || | |||| | || || || || ||||| || ||
Sbjct 995 AGGAAATCAAAGGTCTTAAGACAC-TGTTC-ACCAACATAGATACTGACAAAAGTGGAA- 1051
Query 1089 A-ATCACT-TATGAAGAACTCAAAACCGGGCTGAATAGACATGGCTCTAAACTCTCTGAA 1146
| || ||| | ||||||||||||||| || || | ||||| ||| ||||| |||||| ||
Sbjct 1052 ATATTACTCT-TGAAGAACTCAAAACAGGTCTTACTAGACTTGGATCTAACCTCTCTAAA 1110
Query 1147 ACTGAAGTT-AGGCAACTCATGGAAGCCGCTGATGTTGACGGGAATGGAACAATAGAC-T 1204
|| ||||| || |||||||||||||| |||||| | || || ||||||||||| ||| |
Sbjct 1111 ACCGAAGTGGAG-CAACTCATGGAAGCTGCTGATATGGATGGTAATGGAACAATCGACAT 1169
Query 1205 ACATAGAGTTTATCTCAGCAACGATGCATAGACACAGATTGGA-ACGAGATGAACATTTG 1263
| | |||||||| || ||||||||||||||| ||| |||||| | ||||||||||| ||
Sbjct 1170 AGAC-GAGTTTATTTCTGCAACGATGCATAGATACAAATTGGATA-GAGATGAACATGTG 1227
Query 1264 CACAAAGCATTCCAATACTTTGATAAGGACAAC-AGCGGGTACATAACGAGGGATGAATT 1322
|||||||||||||| ||||||| || |||||| | |||| ||||||||| ||| || ||
Sbjct 1228 TACAAAGCATTCCAACACTTTGACAAAGACAACGA-CGGGCACATAACGAAGGAAGAGTT 1286
Query 1323 GGAGATAGCCATGAAGGAGCATGGTATGGGAGATGAAGCTA--ATGCCAAAGATATAATA 1380
|||||| || ||||||||| ||||| ||||||||||| || || | ||| | || |||
Sbjct 1287 GGAGATGGCGATGAAGGAGGATGGTGCGGGAGATGAAGGTAGCAT-C-AAACAAATCATA 1344
Query 1381 TCAGAAG-TCGATAAAAATAATGATGGAAAAATAGACTATGAGGAATTTTGTACTATGAT 1439
| || | | |||| ||||||||||||||||| ||| ||||||||| | || |||||
Sbjct 1345 GCCGATGCT-GATACCGATAATGATGGAAAAATAAACTTTGAGGAATTCCGCACAATGAT 1403
Query 1440 GAGAAATG-G--CAACTTGCAGCCACAAGGGAAACTTCTT 1476
||||| || | || |||||||||| ||||| ||||||||
Sbjct 1404 GAGAACTGAGAGCAGCTTGCAGCCAGAAGGGGAACTTCTT 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5