BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490111

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04745.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   713    0.0  


> AT4G04745.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G21902.1); 
Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2412754-2413328 
REVERSE LENGTH=575
Length=575

 Score =  713 bits (386),  Expect = 0.0
 Identities = 449/479 (94%), Gaps = 6/479 (1%)
 Strand=Plus/Plus

Query  1    TCACTATATATATACTTGTGCTTCATGTTATTAGCTTACTCAGTCTTTCTTGATACTTCA  60
            ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||
Sbjct  2    TCACTATATATATACTTCTGCTTCATGTTATTAGCTTACTCAATCTTTCTTCATACTACA  61

Query  61   ATACATAGAACAAGAACTCaaaaaaaaGAAAGATAGAAT-ATATGGCATTAATGGTGAAG  119
            ||| |||||| |||||||| |||||||| |||||||||| | ||||||||||||||||||
Sbjct  62   ATATATAGAATAAGAACTC-AAAAAAAG-AAGATAGAATCA-ATGGCATTAATGGTGAAG  118

Query  120  AATAGTCCATACGAGTACACAAAGATGGAGAAAGAAGACCCTCAAGAGCTAATTCACAGC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  119  AATAGTCCATACGAGTACACAAAGATGGAGAAAGAAGACCCTCAAGAGCTAATTCACAG-  177

Query  180  A-GAGCTCAATTTCTAATTCAGAAGGTTTTAGAACGAGCAGACAACAAGACCAGACAACA  238
            | ||||||||||||||||||| ||||||||||||||||| || | |||||||||||| ||
Sbjct  178  ACGAGCTCAATTTCTAATTCAAAAGGTTTTAGAACGAGCCGATAGCAAGACCAGACAGCA  237

Query  239  GCAACAGAGGAGGAGATTGTCTGGACCATTGATTATGATCAGAGTGGTTGGGATAAGAAT  298
             ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||
Sbjct  238  TCAACAGAGGAGGAGATCATCTGGACCGTTGATTATGATCAGAGTGGTTGGGATAAGAAT  297

Query  299  GAGAATTGGTAAGAAGCTAAGGAAGCTGAGGAAGAGTAATAGTTGTGTCTGCAATAatct  358
            |||||||||||||||||| ||||||||||||||||  || | |||| | |||||||||||
Sbjct  298  GAGAATTGGTAAGAAGCTCAGGAAGCTGAGGAAGACCAACACTTGTATATGCAATAATCT  357

Query  359  tatctctcgtttcctcaaatcttttaaacgtttcttgtgttcttcttcttcatcttcttc  418
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  TATCACTCGTTTCCTCAAATCTTTTAAACGTTTCTTGTGTTCTTCTTCTTCATCTTCTTC  417

Query  419  ttctcgaactatctctgatcttcctcctctcttctctcttcAAGTTTGATGATCTTGAT  477
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  418  TTCTCGAACTATCTCTGATCTTCCTCCTCTCTTCTCTCTTCAAGTTTGATGAACTTGAT  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5