BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490113
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04760.1 | Symbols: | Major facilitator superfamily protein... 1576 0.0
AT4G04750.1 | Symbols: | Major facilitator superfamily protein... 747 0.0
> AT4G04760.1 | Symbols: | Major facilitator superfamily protein
| chr4:2424164-2427769 FORWARD LENGTH=1404
Length=1404
Score = 1576 bits (853), Expect = 0.0
Identities = 954/1003 (95%), Gaps = 5/1003 (0%)
Strand=Plus/Plus
Query 43 tcttcttcttcttctttttcttcACTTGTGTCTGAAATATCAAATGCATGCACGAGACCT 102
|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 31 TCTTCTACTTCTTCTTCTTCTTCACTTTTGTCTGAAATATCAAATGCATGCACGAGACCT 90
Query 103 TTTGTTCTTGCTTTCACTGTCGGTTCTTGCGGCGCCTTTGCCTTTGGATGCATTATCGGA 162
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 91 TTTGTTCTTGCTTTCATTGTCGGTTCTTGCGGCGCCTTTGCCTTTGGATGCATTATTGGA 150
Query 163 TATTCGGCTCCGACACAGACCAGTATCATGAAAGACTTGAATCTCTCCATAGCTGATGCA 222
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 151 TATTCGGCTCCGACACAAACAAGTATCATGAAAGACTTGAATCTCTCCATAGCTGATGCA 210
Query 223 ATATTCACTATTTGGATCAATATTGACGGTGGGGTTAATCCTTGGAGCATTAATCTGTGG 282
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 211 ATATTCACTATTTGGATCGATATTGACGGTGGGGTTAATCCTTGGAGCATTAATCTGTGG 270
Query 283 GAAACTATATGGATCACAAACATACTCTTCT-TAATCGGTTGGTTCGCTATCGCATTTGC 341
||||||||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||
Sbjct 271 GAAACTATATGGATCACAAACATCCTCTT-TGTAATCGGATGGTTCGCTATTGCATTTGC 329
Query 342 CAAGGGTGTTTGGCTGCTTGATCTTGGAAGGTTACTGCAAGGGATCTCGATCGGCATTAG 401
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 330 CAAGGGTGTTTGGCTGCTTGATCTCGGAAGGTTACTACAAGGGATCTCGATCGGAATTAG 389
Query 402 CGTATATTTGGGACCGGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGC 461
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CGTATATTTGGGACCAGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGC 449
Query 462 TTCTTCCTTCTCGCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAAC 521
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TTCTTCCTTCGCGCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAAC 509
Query 522 CGTCGTCACATGGCGCAATTTAGCAATTTTGGGATCTATACCTTCTCTAATGGTTATGCC 581
| |||| | |||||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct 510 CATCGTTGCCTGGCGCAATTTAGCCATTTTGGGATGTATACCTTCTCTAATGGTTCTGCC 569
Query 582 TCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGGGAAAAGGA 641
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 570 TCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGAGAAATGGA 629
Query 642 AGTTGAAGCAGTTTTGTTAAGCCTACGAGGAGCAAAATCTGATGTAACAGATGAAACAGC 701
|||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||
Sbjct 630 AGTTGAAGCAGTTTTGTTAAGCCTGCGAGGAGAAAAATCTGATGTATCAGATGAAGCAGC 689
Query 702 AGAGATATTAGAATATACAGAGCATGTTAAACAACAACAAGATGTCGATG---GTGGTTT 758
||||||||||||||||||||| |||||||||||||||||||| |||||| | |||||
Sbjct 690 AGAGATATTAGAATATACAGAACATGTTAAACAACAACAAGACATCGATGACCGCGGTTT 749
Query 759 CTTCACGCTATTTCAGCGAAAATATGCGTTCTCACTTACTATTGGAGTTGTTCTTATAGC 818
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 750 CTTCAAGCTATTTCAGCGAAAATATGCATTCTCACTTACTATTGGAGTTGTTCTTATAGC 809
Query 819 CTTGCCTCAGCTTGGAGGTCTTAACGGCTATTCTTTTTACACCGACTCCATTTTCACCTC 878
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 810 TTTGCCTCAGCTTGGAGGTCTTAACGGTTATTCTTTTTACACTGACTCCATTTTCATCTC 869
Query 879 TACCGGTGTATCGAGTGACTTCGGATTCATATCGACATCTGTTGTTCAGATGTTTGGAGG 938
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 870 TACCGGTGTATCGAGTGACTTTGGATTCATATCTACATCAGTTGTTCAGATGTTTGGAGG 929
Query 939 CATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTTTCCCAAGCTGGAATGTTCT 998
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 930 CATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTTTCTCAAGCTGGAATGTTCT 989
Query 999 TGGGTTGTCTTGCCACAGCCATTTCATTCTTCTTGAAGGCATG 1041
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 990 TGGGTTGTCTTACCACAGCCATTTCATTCTTCTTGAAGGCATG 1032
Score = 593 bits (321), Expect = 1e-168
Identities = 353/368 (96%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 1102 GAGAATCATTGCTGGGAAACAGGAACACCAGTCTTGGCTCTCATTAGTGTTATGGTGTAT 1161
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 1033 GAGAATCATTGCTGGGAAACAGGAACTCCTGTCTTGGCTCTCTTTAGTGTTATGGTGTAT 1092
Query 1162 TTTGGATCATACGGATCTGGTATGGGACCAATACCGTGGATCATAGCATCAGAGATTTAT 1221
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1093 TTTGGATCATACGGTTCTGGTATGGGATCAATACCATGGATCATAGCATCAGAGATTTAT 1152
Query 1222 CCAGTAGATGTGAAGGGAGCAGCAGGAACAATGTGTAACTTGGTCAGCTCTATAAGCTCA 1281
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1153 CCAGTAGATGTTAAGGGAGCAGCGGGAACAATGTGTAACTTGGTCAGCTCTATAAGCGCA 1212
Query 1282 TGGCTCGTTGCTTATTCCTTCAGTTTCTTGCTTCAATGGAGCTCCACAGGAACATTTCTG 1341
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1213 TGGCTTGTTGCTTATTCCTTCAGTTACTTGCTTCAATGGAGCTCCACAGGAACATTTCTG 1272
Query 1342 ATGTTTGCCACAGTGGCTGGCCTTGGATTTGTCTTCATAGCCAAGCTTGTTCCAGAGACC 1401
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1273 ATGTTTGCCACAGTGGCTGGCCTTGGATTTGTGTTCATAGCCAAGCTTGTTCCAGAGACC 1332
Query 1402 AAAGGCAAATCTCTAGAAGAGATTCAATCTCTTTTCACTGATTCTCCTC---AAGATTCT 1458
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1333 AAAGGCAAATCTCTAGAAGAGATTCAATCTCTTTTCACTGATTCTCCTCCTCAAGATTCT 1392
Query 1459 ACAATTTT 1466
||||||||
Sbjct 1393 ACAATTTT 1400
> AT4G04750.1 | Symbols: | Major facilitator superfamily protein
| chr4:2417888-2422624 FORWARD LENGTH=1502
Length=1502
Score = 747 bits (404), Expect = 0.0
Identities = 654/770 (85%), Gaps = 36/770 (5%)
Strand=Plus/Plus
Query 289 ATATGGATCACAAACATAC-TCTTCTTAATCGGTTGGTTCGCTATCGCATTTGCCAAGGG 347
|||||||| |||||||| | | || |||||||| ||||| ||||| |||||||||||||
Sbjct 369 ATATGGATTACAAACATTCTTGTT-TTAATCGGCTGGTTAGCTATTGCATTTGCCAAGGA 427
Query 348 TGTTTGGCTGCTTGATCTTGGAAGGTTACTGCAAGGGATCTCGATCGGCATTAGCGT-AT 406
|||| |||| || ||||||||||||||| |||||||||||||| |||| |||||| | ||
Sbjct 428 TGTTCGGCTACTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTCGGAATTAGC-TCAT 486
Query 407 ATTTGGGACCGGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGCTTCTT 466
|||||||||| ||||||| | |||| ||||||||||||| |||||||||||||||||||
Sbjct 487 ATTTGGGACCTATTTACATTAGCGAGTTAGCACCAAGAAATTTGCGAGGAGCTGCTTCTT 546
Query 467 CCTT-CTCGCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAACCGTC 525
| || | ||||||||| | |||||| ||| |||||| ||||||||| || ||||| | |
Sbjct 547 CGTTGAT-GCAGTTATTTGTCGGTGTGGGTCTATCGGCCTTTTATGCTCTCGGAACAGCC 605
Query 526 GTCACATGGCGCAATTTAGCAATTTTGGGATCTATACCTTCTCTAATGGTTATGCCTCTT 585
|| | ||||||| |||||| ||||| |||||||||||||||||| ||||| ||||||||
Sbjct 606 GTTGCTTGGCGCAGTTTAGCCATTTTAGGATCTATACCTTCTCTAGTGGTTCTGCCTCTT 665
Query 586 CTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGGGAAAAGGAAGTT 645
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 666 CTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGGGAAAAGGAGGTT 725
Query 646 GAAGCAGTTTTGTTAAGCCTACGAGGAGCAAAATCTGATGTAACAGATGAAACAGCAGA- 704
|||| ||||| |||||| | ||||||||||||||||||||| |||||||| ||||| |
Sbjct 726 GAAGGGGTTTTATTAAGCTTGCGAGGAGCAAAATCTGATGTATCAGATGAAGCAGCA-AC 784
Query 705 GATATTAGAATATACAGAGCATGTTAAACAACAACAAGATGTCGAT-G--GTGGTTTCTT 761
|||||||||||||||| | ||||| |||||||| | || |||| | | ||||||||
Sbjct 785 GATATTAGAATATACAAAACATGTCGAACAACAAGAC-AT--CGATAGCCGCGGTTTCTT 841
Query 762 CACGCTATTTCAGCGAAAATATGCGTT-CTCACTTACTATTGGAGTTGTTCTTATAGCCT 820
|| | | || ||||||||||| ||||| | |||| |||||||||||||| |||||| | |
Sbjct 842 CAAGTTGTTCCAGCGAAAATACGCGTTGC-CACTAACTATTGGAGTTGTCCTTATATC-T 899
Query 821 -TGCCTCAGCTTGGAGGTCTTAACGGCTATTCTTTTTACACCGACT-CCATTTTCACCTC 878
|||||||||||||||||||||| || ||| ||||||||||||| | |||||||||||||
Sbjct 900 ATGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGA-TACCATTTTCACCTC 958
Query 879 TACCGGTGTATCGAGTGAC-TTCGGATTCATATCGACATCTGTTGTTCAGATGTTTGGAG 937
|||||||||||| |||||| || |||||||||| ||||||| ||||||||||| |||||
Sbjct 959 TACCGGTGTATCAAGTGACATT-GGATTCATATTGACATCTATTGTTCAGATGACTGGAG 1017
Query 938 GCATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTT-TC-CC-A---------- 984
|| |||||||| | ||||||| ||| |||| |||||||||| || || |
Sbjct 1018 GCGTTTTAGGTGTTTTGCTTGTGGATATATCCGGAAGACGTTCTCTCCTACTGTTTTCTC 1077
Query 985 A-GCTGGAATGTTCTTGGGTTGTCTTGCCACAGCCATTTCATTCTTCTTG 1033
| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1078 AAGCTGGAATGTTCTTGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTG 1127
Score = 464 bits (251), Expect = 1e-129
Identities = 328/364 (90%), Gaps = 9/364 (2%)
Strand=Plus/Plus
Query 1109 ATTGCTGGGAAACAGGAACACCAGTCTTGGCTCTCATTAGTGTTATGGTGTATTTTGGAT 1168
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1138 ATTGCTGGGAAACAGGAACACCAATAATGGCTCTCATTAGTGTTATGGTGTATTTTGGAT 1197
Query 1169 CATACGGATCT-GGTATGGGACCAATACCGTGGATCATAGCATCAGAGATTTATCCAGTA 1227
||||||||| | || |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1198 CATACGGAT-TAGGCATGGGACCAATACCATGGATCATAGCATCAGAGATTTACCCTGTA 1256
Query 1228 GATGTGAAGGGAGCAGCAGGAACAATGTGTAACTTGGTCAGCTCTATAAGCTCATGGCTC 1287
|| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1257 GACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGGTCACCTCTATAAGCTCATGGCTC 1316
Query 1288 GTTGCTTATTCCTTCAGTTTCTTGCTTCAATGGAGCTCCACAGGAACATTTCTGATGTTT 1347
||| |||| ||||||| ||| |||||||||||||| || |||||||| ||| ||||||||
Sbjct 1317 GTTACTTACTCCTTCAATTTTTTGCTTCAATGGAGTTCTACAGGAACGTTTATGATGTTT 1376
Query 1348 GCCACAGTGGCTGGC-CTTGGATTTGTCTTCATAGCCAAGCTTGTTCCAGAGACCAAAGG 1406
||||| ||| ||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1377 GCCACTGTGA-TGGGTCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGAGACCAAAGG 1435
Query 1407 CAAATCTCTAGAAGAGATTCAATCT-CTTTTCACTGATTCTCCT-C--AAGATTCTACAA 1462
||||||| ||||||| ||||||||| ||||| ||||||||| || | ||||||||||||
Sbjct 1436 CAAATCTTTAGAAGAAATTCAATCTGCTTTT-ACTGATTCTACTTCTGAAGATTCTACAA 1494
Query 1463 TTTT 1466
||||
Sbjct 1495 TTTT 1498
Score = 261 bits (141), Expect = 1e-68
Identities = 200/228 (88%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 60 ttcttcACTTGTGTCTGAAATATCAAATGCATGCACGAGACCTTTTGTTCTTGCTTTCAC 119
||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 116 TTCATCACTTCTGTCTGAAATATCAAATGCTTCCACGAGACCTTTTGTTCTTGCTTTCAC 175
Query 120 TGTCGGTTCTTGCGGCGCCTTT-GCCTTTGGATGCATTATCGGATATTCGGCTCCGACAC 178
||| |||||||| || ||||| || |||||||||||| | |||||| | ||||| ||||
Sbjct 176 TGTTGGTTCTTGTGGTGCCTTGAGC-TTTGGATGCATTGTTGGATATACAGCTCCTACAC 234
Query 179 AGACCAGTATCATGAAAGACTTGAATCTCTCCATAGCTGATGCAATATTCACTATTTGGA 238
|| ||||||||||||||||||||||||| |||||||||||| | |||| | ||||||
Sbjct 235 AGTCCAGTATCATGAAAGACTTGAATCTATCCATAGCTGATT---T-TTCATTTTTTGGA 290
Query 239 TCAATATTGACGGTGGGGTTAATCCTTGGAGCATTAATCTGTGGGAAA 286
|| |||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 291 TCGATATTGACAGTGGGGCTAATCCTTGGAGCATTAATTTGTGGGAAA 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5