BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490118
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04830.1 | Symbols: ATMSRB5, MSRB5 | methionine sulfoxide re... 771 0.0
AT4G04810.1 | Symbols: ATMSRB4, MSRB4 | methionine sulfoxide re... 484 3e-136
AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide re... 219 3e-56
> AT4G04830.1 | Symbols: ATMSRB5, MSRB5 | methionine sulfoxide
reductase B5 | chr4:2445859-2447086 FORWARD LENGTH=677
Length=677
Score = 771 bits (417), Expect = 0.0
Identities = 511/554 (92%), Gaps = 15/554 (3%)
Strand=Plus/Plus
Query 8 CGGCTTCTGCGTTGGTGGTCCAAAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCTG 67
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 48 CGGCTTCTCCGTTGGTGGTTCAGAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCGG 107
Query 68 AGCAGTTTCGGATTCTTCGTCAAAAAGGCACCGAAAAACCGGGAACTGGAGAATATGACA 127
|||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 108 AGCAGTTTCGTATTCTTCGTCAAAAAGGCACTGAAAAGCCAGGAACTGGAGAATATGACA 167
Query 128 AGTTTTTCGAGGAAGGAATCTTCTCTTGCGTCGGATGCAAGACTCCTCTTTATAAATCAG 187
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 168 AGTTTTTCGAGGAAGGAATCTTCGATTGCGTAGGATGCAAGACTCCTCTTTATAAATCAA 227
Query 188 TAACAAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTTCCC-GGTGCC 246
|| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 228 CCACGAAGTTCGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGAC-TCCCTGGTGCC 286
Query 247 ATTAACCGAACCCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCAGCGTGCGAT 306
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 287 ATAAACCGAACCCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCTGCGTGCGAT 346
Query 307 GGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTATGGTACTCCAACCGATGAACGCCAT 366
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 347 GGACATTTAGGCCATGTTTTCAAAGGAGAAGGTTACGGTAATCCAACCGATGAACGTCAT 406
Query 367 TGCGTTAACAGCGTTTCGATCAGTTTCAACCCTGCAAAACCTTCCTCTGTTATCTGAGGA 426
||||||||||| |||||||||||||| ||||| |||||| |||||||| | |||||||||
Sbjct 407 TGCGTTAACAGTGTTTCGATCAGTTTTAACCCGGCAAAATCTTCCTCTATAATCTGAGGA 466
Query 427 T-TGATTGATCGATCATACAACATCTTCTAATTACTCAGATTGTGTTGTTA---TTGTCA 482
| |||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 467 TATGATTGATCGATCATACAACATCTTCTAAT--C--AGATTGTGTTGTTAAAATTGTCA 522
Query 483 TCATGTAGTGAATATGCACTTTCTGTGGTGGTCAAT-----GCAACAGATAATAAGACTG 537
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 523 TCATGTAGTGAATATGCACTTTCTGTGGTGGTCAATATAATGCAACAAATAATAAGACTC 582
Query 538 ATTAGATATTGGAT 551
||||||||||||||
Sbjct 583 ATTAGATATTGGAT 596
> AT4G04810.1 | Symbols: ATMSRB4, MSRB4 | methionine sulfoxide
reductase B4 | chr4:2441327-2442567 FORWARD LENGTH=505
Length=505
Score = 484 bits (262), Expect = 3e-136
Identities = 354/398 (89%), Gaps = 8/398 (2%)
Strand=Plus/Plus
Query 21 GGTGGTCCAAAAAACAGAGGAGGAGTGGCGTGCGGTTCTTTCTCCTGAGCAGTTTCGGAT 80
|||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 103 GGTGGTTAAAAAAACAGAGGAGGAGTGGCGTGCAGTTCTTTCTCCTGAACAGTTTCGGAT 162
Query 81 TCTTCGTCAAAAAGGCACCGAAAAACCGGGAACTGGAGAATATGACAAGTT-TTTCGAGG 139
||| |||||||| ||||| |||| |||||||| | ||||||||||||||| ||| ||||
Sbjct 163 TCTCCGTCAAAAGGGCACTGAAACGCCGGGAACAGAAGAATATGACAAGTTCTTT-GAGG 221
Query 140 AAGGAATCTTC-TCTTGCGTCGGATGCAAGACTCCTCTTTATAAAT-CAGTAACAAAGTT 197
||||||||||| | ||| |||||||||| |||||||||||||||| || || |||||
Sbjct 222 AAGGAATCTTCAGC-TGCATCGGATGCAAAACTCCTCTTTATAAATCCA-CCACGAAGTT 279
Query 198 CGATTCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGACTTCCCGGTGCCATTAACCGAAC 257
|| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 280 TGACGCCGGATGCGGCTGGCCAGCTTTCTTTGAAGGACTCCCCGGTGCCATTAACCGAGC 339
Query 258 CCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCAGCGTGCGATGGACATTTAGG 317
||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 340 CCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGTATGTGATGGACATTTAGG 399
Query 318 CCATGTTT-TCAAAGGAGAAGGTTATGGTACTCCAACCGATGAACGCCATTGCGTTAACA 376
||||||| | ||||| ||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 400 CCATGTTCAT-AAAGGTGAAGGTTATAGTACTCCAACCGATGAACGCCTTTGTGTTAACA 458
Query 377 GCGTTTCGATCAGTTTCAACCCTGCAAAACCTTCCTCT 414
|||||||||||| ||| ||||| || ||||||||||||
Sbjct 459 GCGTTTCGATCAATTTTAACCCGGCCAAACCTTCCTCT 496
> AT4G21830.1 | Symbols: ATMSRB7, MSRB7 | methionine sulfoxide
reductase B7 | chr4:11584346-11585419 REVERSE LENGTH=817
Length=817
Score = 219 bits (118), Expect = 3e-56
Identities = 283/359 (79%), Gaps = 25/359 (7%)
Strand=Plus/Plus
Query 32 AAAC-AGAGGAGGAGTGGCGTGCGGTTCTTTCTCCTGAGCAGTTTCGGATTCTTC-GTCA 89
|||| ||| |||||||||||||||||||| ||||||||||||||| || ||| || | |
Sbjct 212 AAACAAGACGAGGAGTGGCGTGCGGTTCTGTCTCCTGAGCAGTTTAGGGTTC-TCAGACT 270
Query 90 AAAAGGCACCGAAAAACCG-GG-AACTGGAGAATATGAC-AAGTTTTTCGAGGAAGGAAT 146
||||||||| || ||| || || || ||||| | | || ||| ||||||||||| |
Sbjct 271 AAAAGGCACAGATAAA-CGAGGCAA-AGGAGAGT-TTACAAAGAAGTTCGAGGAAGGGA- 326
Query 147 CTTCT-CTTGCGTC-GGATGCAAG-ACTCCTCTTTATAAATCAGTA--ACAAAGTTCGAT 201
||| | ||| | | || || | ||| ||||||||||||| | | || ||||||||
Sbjct 327 CTTATAGTTGTG-CTGGTTG-TGGAACTGCTCTTTATAAATC-G-ACCACTAAGTTCGAC 382
Query 202 TCCGGATGTGGCTGGCCAGCTTTCTTTGAAGGAC-TTCCCGGTGCCATTAACCGAACCCC 260
||||| || || ||||| || ||||| | | | | | |||||||| ||||| | ||| ||
Sbjct 383 TCCGGTTGCGGTTGGCCTGCGTTCTTCG-ACGCCATCCCCGGTGCTATTAAACAAACTCC 441
Query 261 TGATCCAGATGGGAGAAGAACT-GAGATCACTTGTGCAGCGTGCGATGGACATTTAGGCC 319
|| ||| ||| ||||||| | ||||| || ||||||| ||| ||||||||||||||||
Sbjct 442 AGAAGCAGGTGGAAGAAGAA-TGGAGATAACATGTGCAGTGTGTGATGGACATTTAGGCC 500
Query 320 ATGTTTTCAAAGGAGAAGGTTA-TGGTACTCCAACCGATGAACGCCATTGCGTTAACAG 377
||||||||||||| |||||||| | ||||||||||||| |||| || |||||||||||
Sbjct 501 ATGTTTTCAAAGGCGAAGGTTACTC-TACTCCAACCGATCAACGTCACTGCGTTAACAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26423161322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5