BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490119
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2459880-24617... 1406 0.0
AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575096-1157... 785 0.0
> AT4G04860.1 | Symbols: DER2.2 | DERLIN-2.2 | chr4:2459880-2461739
FORWARD LENGTH=1351
Length=1351
Score = 1406 bits (761), Expect = 0.0
Identities = 925/1001 (92%), Gaps = 23/1001 (2%)
Strand=Plus/Plus
Query 1 AATTAAACAAATATCGCAAA-ACT-ATTTATT-TACACATTTAAATTTGTGTATATAC-A 56
|||||||||||||||||||| | | |||| ||||||| ||||||| ||||||||| |
Sbjct 4 AATTAAACAAATATCGCAAATGTTAAACTATTATACACATATAAATTTCTGTATATACAA 63
Query 57 GACAAACGAAGAAGACGAATCTCTCAGTTTCG--ATTCGTTTCAAAGTTGTGCGTAGTTG 114
||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||
Sbjct 64 AACAAACGAAGAAGACGAATCTCTCAGTTTCGTCGTTCGTTTCGAAGTTGTGCGTTGGTG 123
Query 115 AAATTTGAAATCTGAA-ACACTCATTGCAAACACCTTTGAAGAAGAAGAAGCTTTCATAG 173
|||||||||||||||| ||||||||||| || ||||| ||||||||||||| | ||
Sbjct 124 AAATTTGAAATCTGAATACACTCATTGC-AA-ACCTTAGAAGAAGAAGAAG--AAGA-AG 178
Query 174 ATTCCGTTGGGTT-C-TAGGGTTTCG-TGACGATTGGA-T-T-TTTGCTTGATCGGATCG 227
| | | || | || | || || || | || | | | |||| ||||||||||||
Sbjct 179 AAGAAG-AAGCTTCCATA-GATTCCGTTG-GGCTTTTACTGTGTTTGATTGATCGGATCG 235
Query 228 ATTGCGATTAAGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 287
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATTGCGATTACGGAGAAGATATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGA 295
Query 288 TTATCACTCGCTCATATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 347
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTATCACTCGCTCTTATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATA 355
Query 348 TTATATCTCCCTATAACCTCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATATT 407
| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 356 TCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATT 415
Query 408 GGCGTCTCGTTACAAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 467
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATA 475
Query 468 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTG 535
Query 528 CTGATTTCCTATACATGCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTC-TACTC 586
||||||||||||||||||||||||||||||| |||||| ||||||||||||| | || ||
Sbjct 536 CTGATTTCCTATACATGCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTA-TC 594
Query 587 GGTGGAATGATACCGTACTTGTCTGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 646
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 GGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCA 654
Query 647 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTC 714
Query 707 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATC 774
Query 767 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCGTACTAC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 775 CTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCTTACTAC 834
Query 827 TTTCTGGCTGAGGTCTATCCACGAATGACTAATCGTCATCCTTTAAAGACTCCATCGTTC 886
|||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||| |||
Sbjct 835 TTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTC 894
Query 887 CTCAAAGCCCTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTT 946
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 895 CTCAAAGCGTTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTT 954
Query 947 GCTGCTGCGCCTTTTGATGAAATCCACCAAGACTGAGTCTG 987
|||||||||||||| ||||||||||||||||||||| ||||
Sbjct 955 GCTGCTGCGCCTTTCGATGAAATCCACCAAGACTGATTCTG 995
Score = 235 bits (127), Expect = 7e-61
Identities = 181/206 (88%), Gaps = 8/206 (4%)
Strand=Plus/Plus
Query 988 AGTTTGGCTTGTTGATCATATATATATGGTAAAAAGGCAGATGATACAC-AAAGTCTA-- 1044
|||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1034 AGTTTGGCTTGTGGATCAGATATAAATGGTGCAAAGGCAGATGATACACAAAAGTCTATT 1093
Query 1045 TTAACTCTGACACGCTAGTTATGAAACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1104
|| ||||||||||| ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1094 TTGACTCTGACACG-TAG-T-TGCGACCCACACACCCTAGTTTCTAGTAGTTGGGTGTGT 1150
Query 1105 TTTGGTTCCTTCCCTTTTCTCCCATCTCTTTATCTTGTTGTGTATACAAATTT-GCTTTG 1163
|||||||||||| |||| |||||||||||| ||||| ||||||||||||| | | ||||
Sbjct 1151 TTTGGTTCCTTCTCTTTCCTCCCATCTCTTCATCTTTTTGTGTATACAAACATCG-TTTG 1209
Query 1164 CTCTTAGTGGTTATGGATATGGACAC 1189
|| ||||||||||| |||||| ||||
Sbjct 1210 CTTTTAGTGGTTATTGATATGAACAC 1235
> AT4G21810.1 | Symbols: DER2.1 | DERLIN-2.1 | chr4:11575096-11577195
REVERSE LENGTH=1176
Length=1176
Score = 785 bits (425), Expect = 0.0
Identities = 645/750 (86%), Gaps = 20/750 (3%)
Strand=Plus/Plus
Query 247 TATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCATATCT 306
||||||||| || |||||||| ||||| || |||||||||||||| || || || |||||
Sbjct 192 TATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATTATAACCCGGTCGTATCT 251
Query 307 CACGGCGGCTGTTA-TCACCACCGTCGGATGTTCCCTCGATATTATATCTCCCTATAACC 365
||||||||||| || ||||||||||||| ||||| ||||| ||||||||||| ||||| |
Sbjct 252 CACGGCGGCTG-TAGTCACCACCGTCGGGTGTTCGCTCGAGATTATATCTCCTTATAATC 310
Query 366 TCTATTTGAATCCGACCCTTGTGGTGAAGCAATACCAATAT-TGGCGTCTCGTTACAAAT 424
|||| | ||||| ||||||||||||||||||||||| | | |||||||| || ||||||
Sbjct 311 TCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGT-TCTGGCGTCTTGTCACAAAT 369
Query 425 TT-CTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACG 483
|| ||| |||||||| ||||||||||||||||| ||||||||||||| ||||| || ||
Sbjct 370 TTCCTT-TATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCG 428
Query 484 ATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACAT 543
|||||||||||| || ||||||||||| |||||||||||||| || |||||||| |||||
Sbjct 429 ATACTGCAAACTGCTCGAAGAAAACTCCTTCAGGGGAAAGACCGCGGATTTCCTTTACAT 488
Query 544 GCTCCTATTTGGAGCTTCTGTTCTAACCGGTATTGTTCTAC-TCGGTGGAATGATACCGT 602
|||| |||| || || |||||||||| ||||||||||| | | || ||||||||||| |
Sbjct 489 GCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCT-CATTGGCGGAATGATACCTT 547
Query 603 ACTTGTCTGCATCATT-TGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATG 661
| ||||||| ||||| | | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 548 ATTTGTCTGTTTCATTCT-CCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATG 606
Query 662 GTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACC 721
|||||||||||||| |||||||||||||| || ||||||||||||||||| || |||||
Sbjct 607 GTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTTGGCCTCTTCACT 666
Query 722 TTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGT 781
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 667 TTCACAGCAGCTTATTTACCATGGGTACTTCTTGGATTCTCTATCCTTGTTGGTGCAAGT 726
Query 782 GCTTGGGTGGATCTTT-TGGGTATGATAGCAGGTCACGCGTACTACTTTC-TGGC-TGAG 838
|| |||| |||| ||| |||| |||||||| || ||||| |||||| ||| |||| |
Sbjct 727 GCATGGGGGGAT-TTTCTGGGAATGATAGCGGGCCACGCATACTAC-TTCTTGGCAT-TT 783
Query 839 GTCTATCCACGAATGACTAATCGTCAT-CCTTTAAAGACTCCATCGTTCCTCAAAGCCCT 897
|| ||||| |||||||| |||| | | |||| ||| |||||||| |||||||| |||||
Sbjct 784 GTGTATCCCCGAATGACGGATCGACGTCCCTTGAAA-ACTCCATCTTTCCTCAAGGCCCT 842
Query 898 ATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAAACGTGAGGTTTGCTGC-TGCGC 956
|||||| ||||| ||||| ||| ||||| |||||||| | ||||| |||||| | |||||
Sbjct 843 ATTTGCTGATGAGCCAGTCGTGATTGCAAGGCCAGAAGATGTGAGATTTGCT-CATGCGC 901
Query 957 CTTTTGATGAAATCCACCAAGACTGAGTCT 986
|||||||||||||||||||||||||| |||
Sbjct 902 CTTTTGATGAAATCCACCAAGACTGAATCT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5