BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490140
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04955.1 | Symbols: ATALN, ALN | allantoinase | chr4:2522034... 2543 0.0
> AT4G04955.1 | Symbols: ATALN, ALN | allantoinase | chr4:2522034-2525280
REVERSE LENGTH=1809
Length=1809
Score = 2543 bits (1377), Expect = 0.0
Identities = 1544/1625 (95%), Gaps = 9/1625 (1%)
Strand=Plus/Plus
Query 1 AGAGAGATGGAGAGGACTTTGCTTCAATGGAGATTATTGCctcttctcgctctcatcgct 60
||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 16 AGAGATATGGAGAGAACTTTGCTTCAATGGAGACTATTGCCTCTTCTCGCACTCATCGTT 75
Query 61 gctcttttctccatattcttcgcttctcctcgctcttTACAGGGGAATAATAGGTGTAGT 120
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 76 GCTCTTTTCTCCTTCTTCTTCGCTTCTCCTCGCTCTTTACAGGGGAATAATAAGTGTAGT 135
Query 121 CTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTGATGGTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 136 CTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTAATGGTCTC 195
Query 181 ATCTCTGGTTCTGTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATCTCTGGTTCTGTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGAT 255
Query 241 TGGCATAAGAGCCAAAGGAGTCGAGTGAAAGTGATTGACTATGGAGAAGCTGTCATCATG 300
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 256 TGGCATAAGAGTCAAAGGAGTCGAGTGAAAGTGATTGATTATGGAGAAGCTGTCCTCATG 315
Query 301 CCTGGTCTCATTGATGTGCATGTTCATCTTGATGATCCTGGAAGAAGTGAATGGGAAGGG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CCTGGTCTCATTGATGTGCATGTTCATCTTGATGATCCTGGAAGAAGTGAATGGGAAGG- 374
Query 361 TTTTC-TTCTGGAACTAAGGCTGCTGCTGCTGGGGGAATAACCACATTGGTTGACATGCC 419
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 375 TTTTCCTTCTGGAACTAAGGCTGCTGCTGCTGGGGGAATAACTACATTGGTTGACATGCC 434
Query 420 CTTAAACAGTTTCCCTTCAACTGTATTTCCTGAAACTTTGAAACTCAAGATTGAAGCTGC 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 435 CTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAGATTGAAGCTGC 494
Query 480 GGAAAACAGAATACATGTTGATGTTGGTTTTTGGGGAGGTCTGGTGCCTGATAATGCACT 539
| ||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 495 GAAAAACAGAATACATGTTGATGTTGGGTTCTGGGGAGGTCTGGTACCTGACAATGCACT 554
Query 540 CAACTCAAGTGCTCTTGAGTCTCTCTTAGATGCTGGAGTTCTTGGTCTCAAGTCCTTTAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CAACTCAAGTGCTCTTGAGTCTCTCTTAGATGCTGGAGTTCTTGGTCTCAAGTCCTTTAT 614
Query 600 GTGTCCTTCAGGAATCAACGATTTTCCAATGACAAACATAACTCATATAAAGGAAGGACT 659
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 615 GTGCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGGAAGGACT 674
Query 660 ATCTGTATTAGCTAAATATAGACGACCATTGCTTGTACACGCAGAGGTTGAAAAAGACTT 719
|||||||||||||||||| | ||||||||||||||||||||||||| | || | ||||||
Sbjct 675 ATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAGAGATCGAGAGAGACTT 734
Query 720 AGAGATTGAAGATGGCAATGACAATGATCCTCGTTCTTATCTTACTTATTTAAAAACCAG 779
||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 735 AGAGATTGAAGATGGTAGTGAAAATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAG 794
Query 780 ACCAACTTCATGGGAGGAGGGAGCAATCCGAAACTTATTATCGGTTACTGAAAACACAAG 839
|| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 795 GCCTACTTCATGGGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAG 854
Query 840 GATTGGTGGTTCTGCAGAAGGAGCTCATGTTCATATTGTACATTTATCTGATGCCAGTTC 899
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 855 AATTGGTGGTTCTGCAGAAGGAGCTCATCTTCATATTGTACATTTATCTGATGCCAGTTC 914
Query 900 TTCCTTGGATTTGATAAAGGAAGCCAAAGGTAAAGGAGACAGTGTTACTGTTGAAACATG 959
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 915 TTCCTTGGATTTGATAAAGGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATG 974
Query 960 CCCGCATTACCTGGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAATG 1019
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TCCACATTACCTAGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAATG 1034
Query 1020 CTCCCCACCTATACGTGATGCAGCAAATAGAGAAAAGTTGTGGGAAGCTATGATGGAAGG 1079
|||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 1035 CTCCCCTCCTATACGTGATGCGGCAAATAGAGAAAAATTGTGGGAAGCTTTGATGGAAGG 1094
Query 1080 AGACATTGATATGCTGAGCTCTGATCATTCACCTACAAAGCCTGAACTCAAACTTCTGAG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1095 AGACATTGATATGCTGAGCTCTGATCATTCACCTACAAAGCCTGAACTCAAACTTATGAG 1154
Query 1140 TGATGGTAACTTCTTGAAAGCATGGGGTGGGATATCATCTTTACAGTTTGTTCTTCCAAT 1199
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1155 TGATGGCAACTTCTTGAAAGCTTGGGGTGGGATATCTTCTTTACAGTTTGTTCTTCCTAT 1214
Query 1200 CACATGGTCTTATGGAAAAAAGTATGGAGTGACGCTCGAGAAGGTAGCTTCTTGGTGGAG 1259
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1215 CACATGGTCTTATGGAAAAAAGTATGGAGTAACGCTCGAGCAGGTAACTTCTTGGTGGAG 1274
Query 1260 TGATAGGCCTTCTAAACTCGCTGGACTACACTCTAAGGGAGCGATTACGGTTGGAAAACA 1319
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1275 TGATAGGCCTTCCAAACTCGCTGGACTACACTCTAAGGGAGCGGTTACGGTTGGAAAACA 1334
Query 1320 CGCAGATTTTGTTGTTTGGGAACCTGAAGCCGAATTTGATCTCGATGAAGATCATCCAAT 1379
||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1335 CGCAGATCTTGTTGTGTGGGAACCTGAAGCCGAATTTGATGTAGATGAAGATCATCCAAT 1394
Query 1380 TCACTTCAAACACCCCAGTATCTCAGCTTATTTGGGAAGAAGATTATCAGGCAGAGTGGT 1439
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1395 TCACTTCAAACACCCTAGTATCTCAGCTTATTTGGGAAGAAGATTATCAGGCAAAGTGGT 1454
Query 1440 TTCGACATTTGTGAGAGGGAACTTGGTCTTTGGAGAAGGCAAGCATGCTTATGATGCTTG 1499
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1455 TTCGACATTTGTGAGAGGGAACTTGGTTTTTGGAGAAGGCAAGCATGCTTCTGATGCTTG 1514
Query 1500 CGGATCTCTGCAACTTGCGACT--TGAAACT-AAAAAGGGATTTAAAAGATCTTAATCGG 1556
||| |||||||||||||| ||| | || || |||||||||||||||||||||| ||| |
Sbjct 1515 CGGGTCTCTGCAACTTGCAACTACTTAA-CTTAAAAAGGGATTTAAAAGATCTTGATCTG 1573
Query 1557 CACCATTGTAA-CAAATGTAAATAGGTGATTAAAGAGTTGCTCTCATGTTGCTAGATGGT 1615
||||||| ||| |||||||||||| | |||||| |||||||||||||||||| |||||||
Sbjct 1574 CACCATT-TAAACAAATGTAAATATGCGATTAA-GAGTTGCTCTCATGTTGCAAGATGGT 1631
Query 1616 TGATG 1620
|||||
Sbjct 1632 TGATG 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5