BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490141
Length=2198
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04960.1 | Symbols: | Concanavalin A-like lectin protein ki... 3301 0.0
> AT4G04960.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr4:2533056-2535386 FORWARD LENGTH=2331
Length=2331
Score = 3301 bits (1787), Expect = 0.0
Identities = 2080/2218 (94%), Gaps = 34/2218 (2%)
Strand=Plus/Plus
Query 1 tcttcgtcttcg-tcttcttcctctaccatgaaagctcttctctttcttctcaccctttt 59
|||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 14 TCTTCGTCTT-GTTCTTCTTCATCTACCATGAAAGCTCTTCTCTTTCTTCTTACCCTTTT 72
Query 60 cctcATCCTTCCAAACCCAATTTCAGCCATTGATTTCGTCTTCAACGGCTTCAATGACTC 119
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 73 CCTCATCCTCCCAAACCCAATCTCAGCCATTGATTTCATCTTCAACGGCTTCAATGACTC 132
Query 120 TTCATCTAATGTCTCCCTCTTCGGGATCGCAACAATCGAATCAAAAATCCTAACTTTAAC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 ATCATCTAATGTCTCCCTCTTCGGGATCGCAACAATCGAATCAAAAATCCTAACTTTAAC 192
Query 180 AAACCAAACATCGTTTGCAACTGGTCGTGCTCTATACAGCAAAATCATCAGGACAAAAGA 239
|||||||||||||||||||||||||||||||||||||| || || |||| | ||||||||
Sbjct 193 AAACCAAACATCGTTTGCAACTGGTCGTGCTCTATACAACAGAACCATCCGTACAAAAGA 252
Query 240 TCCAATCACTTCCTCTGTTTTACCTTTCTCTACTTCTTTCATCTTCACCATGGCTCCTTT 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TCCAATCACATCCTCTGTTTTACCTTTCTCTACTTCTTTCATCTTCACCATGGCTCCTTA 312
Query 300 TAAGAACACGCTTCCTGGTCACGGCATCGTCTTCCTCTTCGCACCCA-CCACTGGAATCA 358
|||||||| |||||||||||||| |||||||||||||| ||| ||| ||||||||||||
Sbjct 313 CAAGAACACACTTCCTGGTCACGGAATCGTCTTCCTCTTTGCA-CCATCCACTGGAATCA 371
Query 359 ACGGTTCTAGCTCTGCTCAACACTTAGGTCTCTTCAATTTGACTAACAATGGTAACCCTA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACGGTTCTAGCTCTGCTCAACACTTAGGTCTCTTCAATTTGACTAACAATGGTAACCCTA 431
Query 419 GTAATCACATCTTTGGAGTTGAGTTTGATGTTTTTGCTAATCAAGAATTTAGCGACATCG 478
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 432 GTAATCACATCTTTGGAGTTGAGTTTGATGTCTTTGCTAATCAAGAATTTAGTGACATCG 491
Query 479 ATGCTAATCATGTCGGAATTGATGTTAATTCACTTCATTCAGTCTATTCGAACACTTCTG 538
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 492 ATGCTAATCATGTCGGAATTGATGTTAATTCACTTCATTCAGTATATTCTAACACTTCTG 551
Query 539 GTTATTGGTCTGATAATGGAGAG-T-TT-AAGCCATTGAAGCTTAACGATGGAAGAAATT 595
|||||||||||||| |||||| | | || ||||||||||||||||||||||||||||| |
Sbjct 552 GTTATTGGTCTGATGATGGAGTGGTGTTTAAGCCATTGAAGCTTAACGATGGAAGAAACT 611
Query 596 ATCAAGTTTGGATTGATTATAGAGATTTTATAGTTAATGTTACTATGCAAGTTGCTGGTA 655
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 612 ATCAAGTTTGGATTGATTATAGAGATTTTGTAGTTAATGTTACTATGCAAGTCGCTGGTA 671
Query 656 AGATTAGACCTAAGACTCCTTTGCTTACTACGTCTTTGAATCTCTCTGGTGTTGTGGAAG 715
||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 672 AGATTCGACCTAAGATTCCTTTGCTTAGTACGTCTTTGAATCTCTCTGATGTTGTGGAAG 731
Query 716 ATGAGATGTTTGTTGGATTCACTGCAGCTACAGGGAGATTGGTTCAGAGTCATAAGATTT 775
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 732 ATGAGATGTTTGTTGGATTCACTGCTGCTACAGGGAGATTGGTTCAGAGTCATAAGATCT 791
Query 776 TAGCTTGGAGTTTTAGTAACTCTAATTTCTCTTTGAGTGATAGTTTGATCACTACTGGTT 835
||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||||
Sbjct 792 TAGCTTGGAGTTTTAGTAATTCGAATTTCTCGTTGAGTAATAGTTTGATCACTACTGGTT 851
Query 836 TGCCTTCGTTTGTTCTGCCTAAGGACTCGATTCTTAAAGCTAAAtggtttgtttttgtgt 895
| |||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 852 TACCTTCGTTTGTTTTACCTAAGGACTCGATTGTTAAAGCGAAATGGTTTGTTTTTGTGT 911
Query 896 tggcattgatctgtttcttggttgttgcggttg-tgggtttggtgttgtttgctgtggtg 954
||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 912 TGGTGTTGATCTGTTTCTTGGTTGTTGCT-TTGGTTGGTTTGGTGTTGTTTGCTGTGGTG 970
Query 955 AGAAAGAGATTGGAGAAGGCGAGGAAGAGAGCGTTGATGGAGGATTGGGAAATGGAGTAT 1014
||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 971 AGAAAGAGATTAGAGAGGGCAAGGAAGAGAGCGTTGATGGAGGATTGGGAGATGGAGTAT 1030
Query 1015 TGGCCTCATCGGATTCCGTATGAGGAGATTGATTCCGGGACTAAGGGGTTTGATGAGAAG 1074
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1031 TGGCCTCATCGGATTCCGTATGAGGAGATTGAATCCGGCACTAAGGGGTTTGATGAGAAG 1090
Query 1075 AATGTGATTGGGATTGGTGGGAATGGGAAAGTGTATAAAGGTTTGTTACAAGGAGGAGGT 1134
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1091 AATGTGATTGGGATTGGCGGGAATGGGAAAGTTTATAAAGGTTTGTTACAAGGAGG-GGT 1149
Query 1135 -GTGGAAGTTGCGGTTAAGCGGATTTCGCAGGAGAGTAGCGACGGGATGAGGGAGTTTGT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1150 TGTGGAAGTTGCGGTTAAGCGGATTTCGCAGGAGAGTAGCGACGGGATGAGAGAGTTTGT 1209
Query 1194 GGCTGAGATCTCAAGTCTTGGGCGGTTAAAGCACCGGAATTTAGTTTCTTTAAGAGGTTG 1253
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1210 GGCTGAGATATCGAGTCTTGGGCGGTTAAAGCACCGGAATTTAGTTTCTTTAAGAGGATG 1269
Query 1254 GTGCAAGAAGGAGATTGGAAGTTTCATGTTGATATATGATTACATGGAGAATGGAAGTTT 1313
||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 1270 GTGCAAGAAGGAGGTTGGTAGTTTCATGTTGGTTTATGATTACATGGAGAATGGAAGTTT 1329
Query 1314 AGACCGATGGATATTCGAAAACGATCAGAAGAAAACTACGCTTAGCTGTGAAGAGAGGAT 1373
||| ||||||||||||||||||||| |||||| ||||| ||||| || |||||||| ||
Sbjct 1330 AGATCGATGGATATTCGAAAACGATGAGAAGATTACTACCCTTAGTTGCGAAGAGAGAAT 1389
Query 1374 TCGGATTTTGAAAGGTGTAGCTTCGGGAATATTGTATTTGCATGAAGGATGGGAATCTAA 1433
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1390 TCGTATTTTGAAAGGTGTAGCTTCAGGAATATTGTATTTGCATGAAGGATGGGAGTCTAA 1449
Query 1434 GGTTTTACATAGAGACATTAAAGCGAGTAATGTGTTACTTGACCGAGATATGATACCAAG 1493
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1450 GGTTTTACATAGAGATATTAAAGCTAGTAATGTTTTACTTGACCGAGATATGATACCGAG 1509
Query 1494 GCTTAGTGATTTTGGGTTAGCTCGGGTTCATGGACACGAGCAAGCGGTTAGGACCACAAG 1553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1510 GCTTAGTGATTTTGGGTTAGCTCGGGTTCATGGACACGAGCAACCGGTTAGGACCACGAG 1569
Query 1554 GGTGGTTGGTACAGCTGGCTATTTGGCTCCTGAAGTTGTTAAGACTGGGCGTGCATCGAC 1613
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1570 GGTGGTTGGTACAGCTGGCTATTTGGCTCCTGAAGTGGTTAAGACGGGGCGTGCATCGAC 1629
Query 1614 ACAAACCGATGTTTTTGCTTACGGGATACTGGTTCTTGAAGTAATGTGTGGGAGAAGACC 1673
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1630 ACAGACCGATGTTTTTGCTTACGGGATATTGGTTCTTGAAGTAATGTGTGGGAGAAGACC 1689
Query 1674 TATTGAAGAAGGGAAGAAACCGTTAATGGATTGGGTTTGGGGATTAATGGAAAGAGGTGA 1733
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1690 TATTGAAGAAGGGAAGAAACCGTTGATGGATTGGGTTTGGGGATTAATGGAAAGAGGTGA 1749
Query 1734 GATTCTAAACGGGCTTGATCCACAGATGATGATGACACAAG-C----CA----T--T-GA 1781
||||||||| ||||||||||||||||||||||||||||||| | || | | ||
Sbjct 1750 GATTCTAAATGGGCTTGATCCACAGATGATGATGACACAAGGCGTAACAGAAGTCATTGA 1809
Query 1782 TGAAGCTGAAAGAGTTTTGCAGCTTGGATTGCTTTGCGCACATCCTGATCCGGCTAAGAG 1841
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1810 TGAAGCTGAAAGAGTTTTGCAGCTTGGATTGCTTTGTGCACATCCTGATCCGGCCAAAAG 1869
Query 1842 ACCGTCGATGAGACAAGTGGTTCAAGTGTTTGAAGGTGACAAAGCTGAGATATTTGAAGC 1901
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1870 ACCGTCGATGAGACAAGTGGTTCAAGTGTTTGAAGGTGATAAGGCTGAGATCTTTGAAGC 1929
Query 1902 GGACAGTAGTGAAGATGTTGAATCATGGATGTTGAAGAAGATGGGATCTCGGGGAATCTC 1961
|| |||||||||||||| || ||||||||||||| ||||||||||||||| |||| |||
Sbjct 1930 AGAAAGTAGTGAAGATGTCGAGTCATGGATGTTGATGAAGATGGGATCTCGTGGAAGCTC 1989
Query 1962 GCGAGAGTTTTGGTATGGAAGCTCATCACATCCAACGATAGAACAGATTAGACTTCAGTC 2021
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1990 GCGAGAGTTTTGGTATGGAAGCTCATCACATCCGACGATAGAGCAGATTAGACTTCAGTC 2049
Query 2022 TTTGTCTGTGTCTCTTTCGTCTTGGAACAGCTCGATTTTAGAAGGGAGGTGATCATGAAT 2081
||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 2050 TTTGTCTGTGTCTCTTTCGTCTTGGAACAGCTCAATTTTAGAAGGGAGGTGAT---GA-T 2105
Query 2082 TCATGATGAACAAAAGGCTTAAGGAACCTCAAGAATGTAGTTATTTTTGTGGCCTTTACT 2141
|||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 2106 ----GATGAAGAAATGGCTTGAGGAACCTAAAGAATGTAGTTATTTTTGTGGC-TTTACT 2160
Query 2142 TTGTTACTTGTTTTGTACATATACGGT-TTTGTAAACGCATTTCATTATACATGTATT 2198
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2161 TTGTTACTTGTTTTGTACATATACG-TATTTGTAAACGCATTTCATTATACATGTATT 2217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109035583740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5