BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490143 Length=1941 Score E Sequences producing significant alignments: (Bits) Value AT4G04980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1705 0.0 > AT4G04980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547999 REVERSE LENGTH=2749 Length=2749 Score = 1705 bits (923), Expect = 0.0 Identities = 1020/1065 (96%), Gaps = 13/1065 (1%) Strand=Plus/Plus Query 879 ACCGGAACACAAAGCTCCAGCTCCTCCACCGCCGCCTCCTATGTCAAAAGCATCTGAAAG 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1696 ACCGGAACACAAAGCTCCAGCTCCTCCACCGCCGCCTCCTATGTCAAAAGCATCTGAAAG 1755 Query 939 TGGAGAGTTTTGTCAA-TGTCCTAAACTGCAATCTACAAATGGAGACAATGCTCCTTCGA 997 |||||||||||||||| | || |||| ||| ||||||||||||||||||||||| |||| Sbjct 1756 TGGAGAGTTTTGTCAATTTTCGAAAAC-GCATTCTACAAATGGAGACAATGCTCCGTCGA 1814 Query 998 TGCCGGCCCCTCCTGCGCCACCGGGAAGCGGAAGATCATTAAAGAAAGCAACTAGCAAAT 1057 ||||||| ||||| || |||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1815 TGCCGGCACCTCCAGCACCACCGGGTAGCGGAAGATCCTTAAAGAAAGCAACTAGCAAAT 1874 Query 1058 TAAGAAGATCAGCACAAATCGCAAATCTCTATTGGGTTCTCAAAGGGAAGCTTGAAGGCC 1117 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1875 TAAGAAGATCAGCACAAATCGCAAATCTCTATTGGGCTCTCAAAGGGAAGCTTGAAGGCC 1934 Query 1118 GTGGCGTAGAAGGGAAAACAACAAAAGCAAGTAAAGGGAAAAAGAATGTTGCAGAGAAAT 1177 ||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||| Sbjct 1935 GTGGCGTAGAAGGGAAAACAAAAAAAGCAAGTAAAGGGCAAAATAGTGTTGCAGAGAAAT 1994 Query 1178 CTCCTGTTAAAGGTGCAAGATCAGGAATGGCTGATGCACTTGCAGAGATGACAAAGAGGT 1237 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1995 CTCCTGTTAAAGTTGCAAGATCAGGAATGGCTGATGCACTTGCAGAGATGACAAAGAGGT 2054 Query 1238 CGAGTTATTTCCAGCAAATCGAAGAAGATGTTCAGAAATACGCTAAATCAATCGAAGAAT 1297 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2055 CAAGTTATTTCCAGCAAATCGAAGAAGATGTTCAGAAATACGCTAAATCGATCGAAGAAC 2114 Query 1298 TGAAAT-CTACAATACATAGTTTCCAGACAAAAGACATGAAAGAGTTGCTTGAATTTCAT 1356 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2115 TGAAATCCT-CAATACATAGTTTCCAGACAAAAGACATGAAAGAGTTGCTTGAATTTCAT 2173 Query 1357 AGCAAAGTGGAATCTATTCTTGAGAAACTAACTGATGAAACTCAAGTTCTCGCGAGGTTT 1416 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2174 AGCAAAGTAGAATCTATTCTTGAGAAACTAACTGATGAAACTCAAGTTCTCGCGAGGTTT 2233 Query 1417 GAAGGTTTCCCTGAGAAGAAACTAGAAGTAATAAGAACAGCTGGTGCCTTGTACAAGAAG 1476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2234 GAAGGTTTCCCTGAGAAGAAACTAGAAGTAATAAGAACAGCTGGTGCCTTGTACAAGAAG 2293 Query 1477 TTAGATGGGATTCTAGTTGAGCTCAAGAACTGGAAAATTGAGCCTCCATTAAACGATCTT 1536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2294 TTAGATGGGATTCTAGTTGAGCTCAAGAACTGGAAAATTGAGCCTCCATTAAACGATCTT 2353 Query 1537 CTCGATAAGATAGAGCGTTACTTCAACAAATTTAAAGGAGAGATTGAAACGGTTGAGCGA 1596 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2354 CTCGACAAGATAGAGCGTTACTTCAACAAATTTAAAGGCGAGATTGAAACGGTTGAGCGA 2413 Query 1597 ACAAAAGACGAAGACGCTAAAATGTTTCAGAGGCACAACATTAACATCGATTTCCAAGTT 1656 ||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||| Sbjct 2414 ACAAAAGACGAAGACGCTAAAATGTTTAAGAGATACAACATTAACATTGATTTCGAAGTT 2473 Query 1657 CTTGTTCAAGTCAAAGAAACTATGGTTGATGTTTCATCAAATTGCATGGAGTTAGCACTA 1716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2474 CTTGTTCAAGTCAAAGAAACTATGGTTGATGTTTCATCAAATTGCATGGAGTTAGCACTA 2533 Query 1717 AAGGAGAGGAGAGAAGCGAACGAGGAAGCGAAGAACAGTGAAGAAAGCAAGATGAGTAAT 1776 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 2534 AAGGAGAGGAGAGAAGCGAACGAGGAAGCGAAGAACGGTGAAGAAAGCAAGATGA--A-- 2589 Query 1777 ATGAAGGAAGAGAGAGCTAAGAGGCTATGGAGGGCTTTTCAGTTTGCTTTCAAAGTTTAT 1836 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2590 --G--G-AAGAGAGAGCTAAGAGGCTATGGAGGGCTTTTCAGTTTGCTTTCAAAGTTTAT 2644 Query 1837 ACATTTGCAGGAGGTCACGACGAACGAGCAGATTGTTTAACAAGACAACTTGCACATGAG 1896 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 2645 ACATTTGCAGGAGGTCACGATGAACGAGCAGATTGTTTAACGAGACAACTTGCACATGAG 2704 Query 1897 ATTCAAACAGAACCTGATCAAACCGAATCATCGATCATGTCTTGA 1941 ||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 2705 ATTCAAACAGATCCTGATCAATCCGAATCATCGATCATGTCTTGA 2749 Score = 1210 bits (655), Expect = 0.0 Identities = 764/815 (94%), Gaps = 14/815 (2%) Strand=Plus/Plus Query 1 ATGAAAGATCTACAAAAGCTTTCTCCTGAGATTGTAACCATTAATCAATCTTTTGAAATG 60 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 575 ATGAAGGATCTACAAAAGCTATCTCCTGAGATTGTAACCATTAATCAATCTTTTGAAATG 634 Query 61 GAAGGAGCTGACATGGATAAGATGTTAATATTCTTCTACGAAGATCTCAGAGCTATTGGG 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 635 GAAGGAGCTGACATGGATAAGATGTTAATTTTCTTCTACGAAGATCTCAGAGCTATTGGG 694 Query 121 GATTCTTGGATTATGGATAGTGACTGGATTTATCGATCTAAGTACAAAAACAGTGGAGTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 695 GATTCTTGGATTATGGATAGTGACTGGATTTATCGATCTAAGTACAAAAACAGTGGAGTT 754 Query 181 GGGAAGAATAAGTCAGATCGTCTAGTGGAGCATGTATTAGCAGCTCTTGATGGACTAATC 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 GGGAAGAATAAATCAGATCGTCTAGTGGAGCATGTATTAGCAGCTCTTGATGGACTAATC 814 Query 241 AAGACAACAAGAGAAAGATTTGGTATGATGGATCTTGAATCTGAAGGAAGAAAGAGTTTT 300 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 AAAACGACGAGAGAAAGATTTGGTATGATGGATCTTGAATCTGAAGGAAGAAAGAGTTTT 874 Query 301 ACA-C-C-AAAAGGTGTTTCATCAGAAGCAAGAAGAAGCTTTACAAGATCTGCTTCTTAT 357 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 ACAACACCAAAAGGTGTTTCATCAGAAGCAAGAAGAAGCTTTACAAGATCTGCTTCTTAT 934 Query 358 TCAGAAAGTAACAATTCTTTTTATCCATCTCCATTAACACCAAGATCAGTACTTCCAGGG 417 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 935 TCAGAAAGTAACAACTCTTTTTATCCATCTCCATTAACACCGAGATCAGTACTTCCAGGG 994 Query 418 ACAATGCT-ACTGTCTAGTAACTCAACATCTCCAAGTCTATGGAACTTAAGAGCTCAAGC 476 |||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 995 ACAATGATGA-TGTCTAGTAACTCTACATCTCCAAGTCTATGGAACTTAAGAGCTCAAGC 1053 Query 477 TTTGGATAGGTTAAGCCCTGTTGATTTAAAGCGGTTTGCTATGCAGATCTTGTCACAAAG 536 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1054 TTTGGATAGGTTAAGTCCTGTTGATTTGAAGCGGTTTGCTATGCAGATCTTGTCACAGAG 1113 Query 537 AGATTCAGAGAGTGTTAATGAAACAAAGATTGGTATCgaagaagaaaacgaagagagtga 596 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1114 AGATTCAGAGAGTGTTAGTGAAACAAAGATTGGTATCGAAGAAGAAAATGAAGAGAGTGA 1173 Query 597 gatattagcagaagaaaaagaagaagaagaTAATGATTTCTCTGTTTTAGAAACAGAGC- 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1174 GATATTAGCAGAAGAAAAAGAAGAAGAAGATAATGATTTCTCTGTTTTAGAAACAGAGGG 1233 Query 656 ATCATAGGGAAG-GTTCTGGAACAGAGCATGAAATCGAAGGTTCTGAAACAGAGCATGAG 714 | || || ||| | | | |||||| ||| | | ||| |||||| ||||||||||||| Sbjct 1234 AACAGAGC-AAGAGAT-TAAAACAGAACATCATAGGGAAAGTTCTGGAACAGAGCATGAG 1291 Query 715 ATTGAAGCAAAGGAT-AGTAGCGAAGGTTGTGAAACAGAGCATCAT---ATTGAAGGTTT 770 | ||||||||||||| | ||||||||||| |||||||||||||||| |||||| |||| Sbjct 1292 ACTGAAGCAAAGGATCA-TAGCGAAGGTTTTGAAACAGAGCATCATCGTATTGAATGTTT 1350 Query 771 CGAAACAGAGCATGAGATTGAAACAGAGGATCATA 805 |||||| |||||||||||||| |||| ||||||| Sbjct 1351 CGAAACTGAGCATGAGATTGATGCAGATGATCATA 1385 Score = 156 bits (84), Expect = 9e-37 Identities = 135/158 (85%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 656 ATCATAGGGAAGGTTCTGGAACAGAGCATGA--A-ATCGAAGGTTCT-GAAACAGAGCAT 711 |||||| |||| || || |||||||||| | | || ||||||| | |||||||||||| Sbjct 1380 ATCATATCGAAGATTTTGAAACAGAGCATCATCATATTGAAGGTT-TAGAAACAGAGCAT 1438 Query 712 GAGATTGAAGCAAAGGAT-AGTAGCGAAGGTTGTGAAACAGAG---CATCATATTGAAGG 767 |||||||| ||||| ||| | || ||||| || |||||||||| |||||||||||||| Sbjct 1439 GAGATTGATGCAAATGATCA-TATCGAAGATTTTGAAACAGAGCATCATCATATTGAAGG 1497 Query 768 TTTCGAAACAGAGCATGAGATTGAAACAGAGGATCATA 805 |||||||||||||||||||| ||||||||||||||||| Sbjct 1498 TTTCGAAACAGAGCATGAGAATGAAACAGAGGATCATA 1535 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96134043675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5