BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490143
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1705 0.0
> AT4G04980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G11070.1);
Has 23100 Blast hits to 15699 proteins in 1063 species: Archae
- 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants
- 3181; Viruses - 958; Other Eukaryotes - 5007 (source:
NCBI BLink). | chr4:2544210-2547999 REVERSE LENGTH=2749
Length=2749
Score = 1705 bits (923), Expect = 0.0
Identities = 1020/1065 (96%), Gaps = 13/1065 (1%)
Strand=Plus/Plus
Query 879 ACCGGAACACAAAGCTCCAGCTCCTCCACCGCCGCCTCCTATGTCAAAAGCATCTGAAAG 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 ACCGGAACACAAAGCTCCAGCTCCTCCACCGCCGCCTCCTATGTCAAAAGCATCTGAAAG 1755
Query 939 TGGAGAGTTTTGTCAA-TGTCCTAAACTGCAATCTACAAATGGAGACAATGCTCCTTCGA 997
|||||||||||||||| | || |||| ||| ||||||||||||||||||||||| ||||
Sbjct 1756 TGGAGAGTTTTGTCAATTTTCGAAAAC-GCATTCTACAAATGGAGACAATGCTCCGTCGA 1814
Query 998 TGCCGGCCCCTCCTGCGCCACCGGGAAGCGGAAGATCATTAAAGAAAGCAACTAGCAAAT 1057
||||||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1815 TGCCGGCACCTCCAGCACCACCGGGTAGCGGAAGATCCTTAAAGAAAGCAACTAGCAAAT 1874
Query 1058 TAAGAAGATCAGCACAAATCGCAAATCTCTATTGGGTTCTCAAAGGGAAGCTTGAAGGCC 1117
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1875 TAAGAAGATCAGCACAAATCGCAAATCTCTATTGGGCTCTCAAAGGGAAGCTTGAAGGCC 1934
Query 1118 GTGGCGTAGAAGGGAAAACAACAAAAGCAAGTAAAGGGAAAAAGAATGTTGCAGAGAAAT 1177
||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||
Sbjct 1935 GTGGCGTAGAAGGGAAAACAAAAAAAGCAAGTAAAGGGCAAAATAGTGTTGCAGAGAAAT 1994
Query 1178 CTCCTGTTAAAGGTGCAAGATCAGGAATGGCTGATGCACTTGCAGAGATGACAAAGAGGT 1237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 CTCCTGTTAAAGTTGCAAGATCAGGAATGGCTGATGCACTTGCAGAGATGACAAAGAGGT 2054
Query 1238 CGAGTTATTTCCAGCAAATCGAAGAAGATGTTCAGAAATACGCTAAATCAATCGAAGAAT 1297
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2055 CAAGTTATTTCCAGCAAATCGAAGAAGATGTTCAGAAATACGCTAAATCGATCGAAGAAC 2114
Query 1298 TGAAAT-CTACAATACATAGTTTCCAGACAAAAGACATGAAAGAGTTGCTTGAATTTCAT 1356
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 TGAAATCCT-CAATACATAGTTTCCAGACAAAAGACATGAAAGAGTTGCTTGAATTTCAT 2173
Query 1357 AGCAAAGTGGAATCTATTCTTGAGAAACTAACTGATGAAACTCAAGTTCTCGCGAGGTTT 1416
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2174 AGCAAAGTAGAATCTATTCTTGAGAAACTAACTGATGAAACTCAAGTTCTCGCGAGGTTT 2233
Query 1417 GAAGGTTTCCCTGAGAAGAAACTAGAAGTAATAAGAACAGCTGGTGCCTTGTACAAGAAG 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 GAAGGTTTCCCTGAGAAGAAACTAGAAGTAATAAGAACAGCTGGTGCCTTGTACAAGAAG 2293
Query 1477 TTAGATGGGATTCTAGTTGAGCTCAAGAACTGGAAAATTGAGCCTCCATTAAACGATCTT 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 TTAGATGGGATTCTAGTTGAGCTCAAGAACTGGAAAATTGAGCCTCCATTAAACGATCTT 2353
Query 1537 CTCGATAAGATAGAGCGTTACTTCAACAAATTTAAAGGAGAGATTGAAACGGTTGAGCGA 1596
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2354 CTCGACAAGATAGAGCGTTACTTCAACAAATTTAAAGGCGAGATTGAAACGGTTGAGCGA 2413
Query 1597 ACAAAAGACGAAGACGCTAAAATGTTTCAGAGGCACAACATTAACATCGATTTCCAAGTT 1656
||||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||
Sbjct 2414 ACAAAAGACGAAGACGCTAAAATGTTTAAGAGATACAACATTAACATTGATTTCGAAGTT 2473
Query 1657 CTTGTTCAAGTCAAAGAAACTATGGTTGATGTTTCATCAAATTGCATGGAGTTAGCACTA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2474 CTTGTTCAAGTCAAAGAAACTATGGTTGATGTTTCATCAAATTGCATGGAGTTAGCACTA 2533
Query 1717 AAGGAGAGGAGAGAAGCGAACGAGGAAGCGAAGAACAGTGAAGAAAGCAAGATGAGTAAT 1776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 2534 AAGGAGAGGAGAGAAGCGAACGAGGAAGCGAAGAACGGTGAAGAAAGCAAGATGA--A-- 2589
Query 1777 ATGAAGGAAGAGAGAGCTAAGAGGCTATGGAGGGCTTTTCAGTTTGCTTTCAAAGTTTAT 1836
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 --G--G-AAGAGAGAGCTAAGAGGCTATGGAGGGCTTTTCAGTTTGCTTTCAAAGTTTAT 2644
Query 1837 ACATTTGCAGGAGGTCACGACGAACGAGCAGATTGTTTAACAAGACAACTTGCACATGAG 1896
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2645 ACATTTGCAGGAGGTCACGATGAACGAGCAGATTGTTTAACGAGACAACTTGCACATGAG 2704
Query 1897 ATTCAAACAGAACCTGATCAAACCGAATCATCGATCATGTCTTGA 1941
||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2705 ATTCAAACAGATCCTGATCAATCCGAATCATCGATCATGTCTTGA 2749
Score = 1210 bits (655), Expect = 0.0
Identities = 764/815 (94%), Gaps = 14/815 (2%)
Strand=Plus/Plus
Query 1 ATGAAAGATCTACAAAAGCTTTCTCCTGAGATTGTAACCATTAATCAATCTTTTGAAATG 60
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 575 ATGAAGGATCTACAAAAGCTATCTCCTGAGATTGTAACCATTAATCAATCTTTTGAAATG 634
Query 61 GAAGGAGCTGACATGGATAAGATGTTAATATTCTTCTACGAAGATCTCAGAGCTATTGGG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 635 GAAGGAGCTGACATGGATAAGATGTTAATTTTCTTCTACGAAGATCTCAGAGCTATTGGG 694
Query 121 GATTCTTGGATTATGGATAGTGACTGGATTTATCGATCTAAGTACAAAAACAGTGGAGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GATTCTTGGATTATGGATAGTGACTGGATTTATCGATCTAAGTACAAAAACAGTGGAGTT 754
Query 181 GGGAAGAATAAGTCAGATCGTCTAGTGGAGCATGTATTAGCAGCTCTTGATGGACTAATC 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GGGAAGAATAAATCAGATCGTCTAGTGGAGCATGTATTAGCAGCTCTTGATGGACTAATC 814
Query 241 AAGACAACAAGAGAAAGATTTGGTATGATGGATCTTGAATCTGAAGGAAGAAAGAGTTTT 300
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAAACGACGAGAGAAAGATTTGGTATGATGGATCTTGAATCTGAAGGAAGAAAGAGTTTT 874
Query 301 ACA-C-C-AAAAGGTGTTTCATCAGAAGCAAGAAGAAGCTTTACAAGATCTGCTTCTTAT 357
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 ACAACACCAAAAGGTGTTTCATCAGAAGCAAGAAGAAGCTTTACAAGATCTGCTTCTTAT 934
Query 358 TCAGAAAGTAACAATTCTTTTTATCCATCTCCATTAACACCAAGATCAGTACTTCCAGGG 417
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 935 TCAGAAAGTAACAACTCTTTTTATCCATCTCCATTAACACCGAGATCAGTACTTCCAGGG 994
Query 418 ACAATGCT-ACTGTCTAGTAACTCAACATCTCCAAGTCTATGGAACTTAAGAGCTCAAGC 476
|||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 995 ACAATGATGA-TGTCTAGTAACTCTACATCTCCAAGTCTATGGAACTTAAGAGCTCAAGC 1053
Query 477 TTTGGATAGGTTAAGCCCTGTTGATTTAAAGCGGTTTGCTATGCAGATCTTGTCACAAAG 536
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1054 TTTGGATAGGTTAAGTCCTGTTGATTTGAAGCGGTTTGCTATGCAGATCTTGTCACAGAG 1113
Query 537 AGATTCAGAGAGTGTTAATGAAACAAAGATTGGTATCgaagaagaaaacgaagagagtga 596
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1114 AGATTCAGAGAGTGTTAGTGAAACAAAGATTGGTATCGAAGAAGAAAATGAAGAGAGTGA 1173
Query 597 gatattagcagaagaaaaagaagaagaagaTAATGATTTCTCTGTTTTAGAAACAGAGC- 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GATATTAGCAGAAGAAAAAGAAGAAGAAGATAATGATTTCTCTGTTTTAGAAACAGAGGG 1233
Query 656 ATCATAGGGAAG-GTTCTGGAACAGAGCATGAAATCGAAGGTTCTGAAACAGAGCATGAG 714
| || || ||| | | | |||||| ||| | | ||| |||||| |||||||||||||
Sbjct 1234 AACAGAGC-AAGAGAT-TAAAACAGAACATCATAGGGAAAGTTCTGGAACAGAGCATGAG 1291
Query 715 ATTGAAGCAAAGGAT-AGTAGCGAAGGTTGTGAAACAGAGCATCAT---ATTGAAGGTTT 770
| ||||||||||||| | ||||||||||| |||||||||||||||| |||||| ||||
Sbjct 1292 ACTGAAGCAAAGGATCA-TAGCGAAGGTTTTGAAACAGAGCATCATCGTATTGAATGTTT 1350
Query 771 CGAAACAGAGCATGAGATTGAAACAGAGGATCATA 805
|||||| |||||||||||||| |||| |||||||
Sbjct 1351 CGAAACTGAGCATGAGATTGATGCAGATGATCATA 1385
Score = 156 bits (84), Expect = 9e-37
Identities = 135/158 (85%), Gaps = 10/158 (6%)
Strand=Plus/Plus
Query 656 ATCATAGGGAAGGTTCTGGAACAGAGCATGA--A-ATCGAAGGTTCT-GAAACAGAGCAT 711
|||||| |||| || || |||||||||| | | || ||||||| | ||||||||||||
Sbjct 1380 ATCATATCGAAGATTTTGAAACAGAGCATCATCATATTGAAGGTT-TAGAAACAGAGCAT 1438
Query 712 GAGATTGAAGCAAAGGAT-AGTAGCGAAGGTTGTGAAACAGAG---CATCATATTGAAGG 767
|||||||| ||||| ||| | || ||||| || |||||||||| ||||||||||||||
Sbjct 1439 GAGATTGATGCAAATGATCA-TATCGAAGATTTTGAAACAGAGCATCATCATATTGAAGG 1497
Query 768 TTTCGAAACAGAGCATGAGATTGAAACAGAGGATCATA 805
|||||||||||||||||||| |||||||||||||||||
Sbjct 1498 TTTCGAAACAGAGCATGAGAATGAAACAGAGGATCATA 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5