BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490144
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04990.1 | Symbols: | Protein of unknown function (DUF761) ... 1177 0.0
> AT4G04990.1 | Symbols: | Protein of unknown function (DUF761)
| chr4:2555090-2557046 FORWARD LENGTH=912
Length=912
Score = 1177 bits (637), Expect = 0.0
Identities = 851/948 (90%), Gaps = 39/948 (4%)
Strand=Plus/Plus
Query 1 ATGTCAAACTCGAGGACATGGATCATCTCTTCAGGATTAGTCGGAGCCATATCACTGATG 60
|||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTTAACCTCAAGGACATGGATCATCTCTTCAGGCTTAGTCGGAGCCATATCACTGATG 60
Query 61 CTCCGATCGGTATTGAACTTCTCCTTCACCGGAGCTCGCTTCTTTCTCCCTACTAATTTA 120
|| |||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTTCGATCGGTTTTTAACTTCTCCTTCACCGGAGCTCGCTTCCTTCTCCCTACTAATTTA 120
Query 121 CACCCTATTTTCATCATCAGCGGCATCATCTTTGCCCTCGCAGCCTCCAGTTCACTCTTC 180
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 CACCCTATTTTCATCATCAACGGCATCATCTTTGCCCTCGCAGCCTCTACTTCACTCTTC 180
Query 181 GGCAACGGATCTGACTCTCCGGCCACAAATTATCACCATGATGATGATACCTATCATTAT 240
|| |||||| | ||||||||||||||||| ||||||||||||||||||| ||| ||||
Sbjct 181 GGAAACGGACCAGACTCTCCGGCCACAAACCATCACCATGATGATGATACGTATGATTAC 240
Query 241 GAACAAGATCATCATCATGACCAGGACCATGATCGTGGTCGTGACCAAGACCGCGAACGT 300
||||| || | |||||| || |||||||| |||| || | |||
Sbjct 241 GAACAGGA-C--CATCAT---CACGACCATGA------TCGT------GA---C---CGT 276
Query 301 TATTCTAACAACTCATCCAAC-TCCTCGTTTGATCAATACAATAATAAGGTTCACGAGAA 359
| |||||| ||||||||| || || |||||||||||| ||||||||||||||||||||||
Sbjct 277 TCTTCTAATAACTCATCC-ACTTCTTCGTTTGATCAAAACAATAATAAGGTTCACGAGAA 335
Query 360 AGAAAAGTTTTCGGCCGTGAGATCATCAGAGAGGGGAGGATCTTATGGAGTTTCTTCTCC 419
|||||| ||||| | ||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 336 AGAAAA-TTTTC--CAGTGAG---ATCAGAGAGTGGAGGATCTTATGGGGTTTCTTCTCC 389
Query 420 GGAGATTCGTTTTCCGTCC-ACGGCGCCGGAGAAACCCGTCGGTCTTCGACGTCCACCTA 478
|||| |||||||| ||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 390 GGAGGTTCGTTTT-TTTCCAACGGCGCCGGAGAAGCCCGTCGGTCTCCGACGTCCACCTA 448
Query 479 CTGCTCCTGTAAAGACTTTTCGACAAGACAACACATCGGGTGACGATAGCGAGACCATGG 538
||| ||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||
Sbjct 449 CTGTTCCTGTAAAGACTTTTCCACAAGACAATACATCGGGGGACGAGAGCGAGACCATGG 508
Query 539 AGGAGATGTGGGAGAGAGTCAAAGCCGAAAAACAACCAAAGAAACCTGCTAACTCGTTGC 598
||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 509 AGGAGATGTGGGAGAGAGTCAAAGCCGAAAAGCAACCAAAGAAA-C--CTAACTCGTTGC 565
Query 599 AAAACCACGTCATCTCCAGGGGAGACACAAAAATGTCCACATCTTCATGGCCGTTGCCGT 658
|| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 566 AAGACCACGTCATATCCAGGGGAGACACAAAAATGTCAACATCTTCATGGCCGTTGCCGT 625
Query 659 CGCTG-TCACCGTCGCGAACGAGGAGGCCTACTCCCTCGCTGTCTTCGCTATCGCCGTCA 717
| | | |||||||| ||| |||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 626 CAC-GTTCACCGTCACGAGCGAGGAGGCCTACTCCTTCGTTGTCTTCGCTATCACCGTCA 684
Query 718 TCGTCGCGAGCGAGGAAGCCTCCTTCGTCTCCGGCGCGGCCGGGAAAGAAATTGATGGAG 777
||||||||||| |||| ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 685 TCGTCGCGAGCAAGGAGGCCTCCTTCATCTCCCGCGCGGCCGGGAAAGAAGTTGATGGAG 744
Query 778 AGAATTCCGTCGTGGGTGAAGTTGAAAAAAGAGTTATCAATGGGAAGAGAGGAGCTCAAT 837
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AGGATTCCGTCGTGGGTGAAGTTGAAAAAAGAGTTATCAATGGGAAGAGAGGAGCTCAAT 804
Query 838 TCACGAGTGGAAGCTTTCATTACAAAATTCAAGGATGAGATGAAATTGCAGAGGTTGGAG 897
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 805 TCACGAGTGGAAGCCTTCATTACAAAATTCAAGGATGAGATGAAGTTGCAAAGGTTGGAG 864
Query 898 TCTGTAAGACGTTACAAGTCTTTCCGTGGTGACAACGATGAAAAGTAA 945
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 865 TCTGTAAGACGTTACAAGTCTTTCCGTGGTCACAACGATGAAAAGTAA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5