BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490145
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05000.1 | Symbols: VPS28-2 | Vacuolar protein sorting-assoc... 1153 0.0
> AT4G05000.1 | Symbols: VPS28-2 | Vacuolar protein sorting-associated
protein VPS28 family protein | chr4:2563075-2564740
FORWARD LENGTH=1114
Length=1114
Score = 1153 bits (624), Expect = 0.0
Identities = 814/898 (91%), Gaps = 43/898 (5%)
Strand=Plus/Plus
Query 1 TGTTGTTGTTCATCGTTTTCTTACGCAATCATTTTCTAT-TCAGACCTTCGTAAAGGAAG 59
|||| ||||||||||||||| |||||||||| | ||| | |||||||||||||||||||
Sbjct 223 TGTTTTTGTTCATCGTTTTCATACGCAATCA-TCTCT-TGACAGACCTTCGTAAAGGAAG 280
Query 60 CA-CTTGTCCGTGTACCATTCTCTTCTCCATAGATTGACTT--TCTTATGATGGAGGTCA 116
| ||||| |||||||| ||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 281 -AGCTTGTGCGTGTACCGTTCTCTTCTCCGTAGATTGACTTGCTCTAATGATGGAGGTCA 339
Query 117 AATTATGGAATGACAAGCGCGAAAGAGAGATGTATGAGAATTTTGCAGAGCTTTTTGCAA 176
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AATTATGGAACGACAAACGCGAAAGAGAGATGTATGAGAATTTTGCAGAGCTTTTTGCAA 399
Query 177 TCATTAAATCCACAGAGAAGCTCGAGAAAGCTTATATCAGAGACTTAATCAATCC-TAAG 235
|||| ||| ||||||||||||| |||||||||||||| |||||| |||||||||| | |
Sbjct 400 TCATCAAAGCCACAGAGAAGCTAGAGAAAGCTTATATAAGAGACCTAATCAATCCTTCA- 458
Query 236 GAGTACGAATCTGAATGCCAGAAACTCATTGTCCACTTCAAAACACTATCCGCTACACTC 295
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 459 GAGTACGAATCTGAATGCCAGAAACTCATTGTCCACTTCAAAACTTTATCCGCTACACTC 518
Query 296 AAAGACACGGTACCAAACATCGAAAGATTTGCAGACACATACAAAATGGACTGTCCAGCT 355
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAAGACACGGTGCCAAACATTGAAAGATTTGCAGACACATACAAAATGGACTGTCCAGCT 578
Query 356 GCTCTATACAGACTTGTGACATCTGGTGTTCCCGCCACAGTGGAACACCGAGCTACTGTA 415
||||||||| | || |||||||| ||| |||| ||||||||||||||||||||||| ||
Sbjct 579 GCTCTATACCGCCTGGTGACATCAGGTCTTCCTGCCACAGTGGAACACCGAGCTACCGT- 637
Query 416 T-CAGCATCTACGTCGAACTCTGCATCCATTGTTGCTGAATGTGTACAGAATTTCATCAC 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TGCAGCATCTACGTCGAACTCTGCATCCATTGTTGCTGAATGTGTACAGAATTTCATCAC 697
Query 475 ATCGATGGATTCTTTGAAACTAAACATGGTGGCTGTCGATCAGGTTTATCCTCTCTTGTC 534
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TTCAATGGATTCTTTGAAACTAAACATGGTGGCTGTCGATCAGGTTTATCCTCTCTTGTC 757
Query 535 TGATCTATCGGCTTCTCTCAACAAACTGAGTATTTTACCGCCGGACTTCGAAGGGAAGAC 594
||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 758 TGATCTATCTGCTTCTCTCAACAAACTGAGTATTCTACCGCCCGATTTCGAAGGGAAGAC 817
Query 595 GAAGATGAAAGAATGGCTTTCGAGATTGTCTAAGATGGGAGCAGCTGATGAGCTTACGGA 654
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 818 GAAGATGAAAGAATGGCTTTCGAGGTTGTCTAAGATGGGAGCAGCCGATGAGCTTACGGA 877
Query 655 ACAACAGTCAAGGCAACTTCACTTTGATCTGGAGTCATCATACAACTCTTTCATGGCAGC 714
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 878 ACAACAGTCAAGGCAACTTCACTTTGATCTCGAGTCATCATACAACTCTTTCATGGCAGC 937
Query 715 TTTGCCTAAAGCTGGTAATTAAAATCAA--T--G-TA-G------G--TTTG-----GT- 754
|||||||||||||||||||||| ||||| | | || | | |||| ||
Sbjct 938 TTTGCCTAAAGCTGGTAATTAAGATCAATGTAGGTTACGTTTCTTGTTTTTGTTTTTGTG 997
Query 755 T-----TC-TT-GTTTA---TGTTTTAGTGGTAA-TCCAAAGACAATTTTGCACGTTTGA 803
| || || ||||| || ||||||||||| ||| |||| |||||| |||||||||
Sbjct 998 TAAAAGTCTTTGGTTTAGTCTGGTTTAGTGGTAATTCC-AAGAGAATTTTACACGTTTGA 1056
Query 804 GGAGTTGAATGTGCTTGTGTGTACCATATTTTGGTTATATGAAAGTTTTATCTAAACC 861
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GGAGTTGAATGTGCTTATGTGTACCATATTTTGGTTATATGAAAGTTTTATCTAAACC 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5