BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490148 Length=399 Score E Sequences producing significant alignments: (Bits) Value AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 466 7e-131 AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 159 1e-38 > AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:2952610-2953208 REVERSE LENGTH=453 Length=453 Score = 466 bits (252), Expect = 7e-131 Identities = 286/303 (94%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 97 TCATATGGAAGCCATAAACCGGATAGATTGGTAATCGTAAATGCCTTTAGTTTTTCATCC 156 ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 151 TCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAA 210 Query 157 GGAGGCGTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGG 216 ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 211 AGAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAGG 270 Query 217 ACGCTACAGAATATTTGTGTTTTGACAGTTGTTCCAAATACCACCACCTCAGTGATAATT 276 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 271 ACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTATT 330 Query 277 CAAGTTGTACATGATGGTGGTTCTGTATCTTTTTTATGTTCCTTGCACCTTGGTAAACAT 336 || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 331 CAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACAT 390 Query 337 TTACTGATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTTA 396 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 TTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTTA 450 Query 397 TAG 399 ||| Sbjct 451 TAG 453 > AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062 Length=1062 Score = 159 bits (86), Expect = 1e-38 Identities = 113/126 (90%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 175 TTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGGACGCTACAGAATATTTGT 234 ||| |||||||||||| ||||||||| | |||| ||||||||||| |||||| ||||||| Sbjct 340 TTG-GAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGT 398 Query 235 GTTTTGACAGTTGTTCCAAATACCACCACCTCAGTGATAATTCAAGTTGTACATGATGGT 294 |||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 399 GTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGAT 458 Query 295 GGTTCT 300 |||||| Sbjct 459 GGTTCT 464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18850405875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5