BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490148

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   466    7e-131
  AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like su...   159    1e-38 


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  466 bits (252),  Expect = 7e-131
 Identities = 286/303 (94%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  97   TCATATGGAAGCCATAAACCGGATAGATTGGTAATCGTAAATGCCTTTAGTTTTTCATCC  156
            ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||   
Sbjct  151  TCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAA  210

Query  157  GGAGGCGTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGG  216
             ||||| |||||||| ||||||||||||||||||  ||||||||||||||||||||||||
Sbjct  211  AGAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAGG  270

Query  217  ACGCTACAGAATATTTGTGTTTTGACAGTTGTTCCAAATACCACCACCTCAGTGATAATT  276
            |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct  271  ACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTATT  330

Query  277  CAAGTTGTACATGATGGTGGTTCTGTATCTTTTTTATGTTCCTTGCACCTTGGTAAACAT  336
            || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  331  CAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACAT  390

Query  337  TTACTGATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTTA  396
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  391  TTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTTA  450

Query  397  TAG  399
            |||
Sbjct  451  TAG  453


> AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like 
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 113/126 (90%), Gaps = 1/126 (1%)
 Strand=Plus/Plus

Query  175  TTGAGAAAAGTTGAAAGGGAGTATGAAACGATACTGAAAAGGACGCTACAGAATATTTGT  234
            ||| |||||||||||| ||||||||| | |||| ||||||||||| |||||| |||||||
Sbjct  340  TTG-GAAAAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGT  398

Query  235  GTTTTGACAGTTGTTCCAAATACCACCACCTCAGTGATAATTCAAGTTGTACATGATGGT  294
            |||||||| |||  |||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct  399  GTTTTGACTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGAT  458

Query  295  GGTTCT  300
            ||||||
Sbjct  459  GGTTCT  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5