BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490156 Length=1010 Score E Sequences producing significant alignments: (Bits) Value AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:... 1343 0.0 AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:... 470 1e-131 > AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:2590065-2592163 REVERSE LENGTH=1207 Length=1207 Score = 1343 bits (727), Expect = 0.0 Identities = 946/1043 (91%), Gaps = 49/1043 (5%) Strand=Plus/Plus Query 1 ATGGCATTAACGGAGGAAAAATCCGGTTCCGATGGTCGCCGTCGGGGCAAATTCAAGCTC 60 ||||| ||||||||||| ||||| | |||||||||||| ||| ||||||||||||| || Sbjct 164 ATGGCTTTAACGGAGGACAAATCAGATTCCGATGGTCGACGTTGGGGCAAATTCAAACTT 223 Query 61 CCCTTTCGAAACTCCAACGCTCAAGCTACC-TCATCCTCCTCCG-CCTCTTCCATGGCTA 118 || ||||||||||| || | |||||| || ||| |||||| || ||||||||||||||| Sbjct 224 CCATTTCGAAACTCTAATTCCCAAGCT-CCTTCAGCCTCCT-CGTCCTCTTCCATGGCTA 281 Query 119 ------CTTCTTCTGCAACATCTTCTCATCTCAATCAAAATTACATTCATCAATCTCGCC 172 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 282 CTTCTTCTTCTTCTGTAACATCTTCTCATCTAAATCAAAATTACATTCATCAATCTCGCC 341 Query 173 ATTTCCAATATCACGGACCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAA-CCA 231 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 342 ATTTTCAATATCACGGTCCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCG 401 Query 232 CCGCCACGATCCCTTCTATGTCATCTGTCGCGAGATCACTTC-GCGAGATCACTTCTTCC 290 ||||||||||||||||||||||||||||||||||||| |||| | | | || | Sbjct 402 CCGCCACGATCCCTTCTATGTCATCTGTCGCGAGATCGCTTCTTCCA-A-CA---AAACG 456 Query 291 CCTTGATCCTTCAGCAAAACTTTATCCTTCAGCCAAACTCTACCTCCCTTATGAGCCTGG 350 || || || ||| ||| |||||||||| ||||| ||| |||||||||||||||| Sbjct 457 CC--GA---TT----AAAGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGG 507 Query 351 GAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAA 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 GAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAA 567 Query 411 GTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTTCTCC 470 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 568 GTTTCAAACAACAGTACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTGCTCC 627 Query 471 TGGGGAAGAAATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAGAATAATGAAAA 530 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 628 CGGGGAAGAAATTATCGCAACTGTTTTCAAGTTTGTTGAGCCTCCTGAGAATAATGAAAA 687 Query 531 GCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAGATGAAAGTCCC 590 ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 688 GCCAATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCTTGAAGATGAAAGTTCC 747 Query 591 AACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGT 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 748 AACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGT 807 Query 651 AATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAG 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 AATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAG 867 Query 711 TCAATTGGCTGAAGCGGATGCTGCAGATGAAGCACGGAAGAAAGCATCAGAGGGTATTGT 770 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 868 TCAATTGGCTGAAGCGGATGCTGCAGATGAAGCACGGAAAAAAGCATCAGAGGGTATTGT 927 Query 771 TGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGGAAGCAACGACGAGAGAG 830 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 928 TGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGGAAGCAACGCCGAGAGAG 987 Query 831 ATATCTTGCACAGCAACAAGGAGGAGTAGACGCGGCTTGAAAATAAAAGACCACCAAGAC 890 |||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct 988 ATATCTTGCACAACAACAAGGAGGAGTAGACGCTGCTTGAAACTTAAAGACCACCAAGAC 1047 Query 891 CAAAAAgtgtgtgtgtgtgtttt--------------gtgcccagtcaaaatgtgttgtg 936 |||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 1048 CAAAAAGTGTGTGTATGTGTTTTTTTTTTTTAATTTTGTGCCGAGTCAAAATGTGTTGTG 1107 Query 937 tgAGGAGATAGAAGATTGTATTTATGATCA---------GTAATCCCAAAATTATTTGCA 987 ||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1108 TGACGAGATAGAAGATTGTATTTATGATCAATTATCTTAGTAATCCCAAAATTATTTGCA 1167 Query 988 GAGGAGATCATCGTGTTTGGTAA 1010 ||||||||||||||||||||||| Sbjct 1168 GAGGAGATCATCGTGTTTGGTAA 1190 > AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:11425957-11428386 FORWARD LENGTH=1385 Length=1385 Score = 470 bits (254), Expect = 1e-131 Identities = 434/519 (84%), Gaps = 19/519 (4%) Strand=Plus/Plus Query 341 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 400 ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||| Sbjct 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654 Query 401 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 460 |||| || |||||||||||||| | || ||||||||||| ||||| || ||||||||| Sbjct 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714 Query 461 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 519 ||||| ||||||| | ||| ||||| || || || ||||| |||||||||||||||||| Sbjct 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773 Query 520 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 579 |||||||| ||||| ||||| |||| |||| | || |||||||||||||||||||||||| Sbjct 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833 Query 580 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 638 ||||| || |||| |||||| ||||||||||||| || |||||||| ||| ||||||| Sbjct 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892 Query 639 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 695 | |||||||| || |||||||| | ||||||||||| || | || ||| || || | | Sbjct 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949 Query 696 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 754 ||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| |||||| Sbjct 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007 Query 755 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 813 | | |||| || | ||||||||| |||||||||||||||||||||||||||||| Sbjct 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064 Query 814 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 851 ||| | || | |||||||||||||||||||||||||||| Sbjct 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49480634795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5