BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490156
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:... 1343 0.0
AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:... 470 1e-131
> AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:2590065-2592163
REVERSE LENGTH=1207
Length=1207
Score = 1343 bits (727), Expect = 0.0
Identities = 946/1043 (91%), Gaps = 49/1043 (5%)
Strand=Plus/Plus
Query 1 ATGGCATTAACGGAGGAAAAATCCGGTTCCGATGGTCGCCGTCGGGGCAAATTCAAGCTC 60
||||| ||||||||||| ||||| | |||||||||||| ||| ||||||||||||| ||
Sbjct 164 ATGGCTTTAACGGAGGACAAATCAGATTCCGATGGTCGACGTTGGGGCAAATTCAAACTT 223
Query 61 CCCTTTCGAAACTCCAACGCTCAAGCTACC-TCATCCTCCTCCG-CCTCTTCCATGGCTA 118
|| ||||||||||| || | |||||| || ||| |||||| || |||||||||||||||
Sbjct 224 CCATTTCGAAACTCTAATTCCCAAGCT-CCTTCAGCCTCCT-CGTCCTCTTCCATGGCTA 281
Query 119 ------CTTCTTCTGCAACATCTTCTCATCTCAATCAAAATTACATTCATCAATCTCGCC 172
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 282 CTTCTTCTTCTTCTGTAACATCTTCTCATCTAAATCAAAATTACATTCATCAATCTCGCC 341
Query 173 ATTTCCAATATCACGGACCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAA-CCA 231
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 342 ATTTTCAATATCACGGTCCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCG 401
Query 232 CCGCCACGATCCCTTCTATGTCATCTGTCGCGAGATCACTTC-GCGAGATCACTTCTTCC 290
||||||||||||||||||||||||||||||||||||| |||| | | | || |
Sbjct 402 CCGCCACGATCCCTTCTATGTCATCTGTCGCGAGATCGCTTCTTCCA-A-CA---AAACG 456
Query 291 CCTTGATCCTTCAGCAAAACTTTATCCTTCAGCCAAACTCTACCTCCCTTATGAGCCTGG 350
|| || || ||| ||| |||||||||| ||||| ||| ||||||||||||||||
Sbjct 457 CC--GA---TT----AAAGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGG 507
Query 351 GAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAA 567
Query 411 GTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTTCTCC 470
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 568 GTTTCAAACAACAGTACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTGCTCC 627
Query 471 TGGGGAAGAAATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAGAATAATGAAAA 530
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 628 CGGGGAAGAAATTATCGCAACTGTTTTCAAGTTTGTTGAGCCTCCTGAGAATAATGAAAA 687
Query 531 GCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAGATGAAAGTCCC 590
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 688 GCCAATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCTTGAAGATGAAAGTTCC 747
Query 591 AACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 AACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGT 807
Query 651 AATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAG 867
Query 711 TCAATTGGCTGAAGCGGATGCTGCAGATGAAGCACGGAAGAAAGCATCAGAGGGTATTGT 770
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 868 TCAATTGGCTGAAGCGGATGCTGCAGATGAAGCACGGAAAAAAGCATCAGAGGGTATTGT 927
Query 771 TGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGGAAGCAACGACGAGAGAG 830
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 928 TGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGGAAGCAACGCCGAGAGAG 987
Query 831 ATATCTTGCACAGCAACAAGGAGGAGTAGACGCGGCTTGAAAATAAAAGACCACCAAGAC 890
|||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 988 ATATCTTGCACAACAACAAGGAGGAGTAGACGCTGCTTGAAACTTAAAGACCACCAAGAC 1047
Query 891 CAAAAAgtgtgtgtgtgtgtttt--------------gtgcccagtcaaaatgtgttgtg 936
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1048 CAAAAAGTGTGTGTATGTGTTTTTTTTTTTTAATTTTGTGCCGAGTCAAAATGTGTTGTG 1107
Query 937 tgAGGAGATAGAAGATTGTATTTATGATCA---------GTAATCCCAAAATTATTTGCA 987
||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1108 TGACGAGATAGAAGATTGTATTTATGATCAATTATCTTAGTAATCCCAAAATTATTTGCA 1167
Query 988 GAGGAGATCATCGTGTTTGGTAA 1010
|||||||||||||||||||||||
Sbjct 1168 GAGGAGATCATCGTGTTTGGTAA 1190
> AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:11425957-11428386
FORWARD LENGTH=1385
Length=1385
Score = 470 bits (254), Expect = 1e-131
Identities = 434/519 (84%), Gaps = 19/519 (4%)
Strand=Plus/Plus
Query 341 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 400
||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||
Sbjct 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654
Query 401 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 460
|||| || |||||||||||||| | || ||||||||||| ||||| || |||||||||
Sbjct 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714
Query 461 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 519
||||| ||||||| | ||| ||||| || || || ||||| ||||||||||||||||||
Sbjct 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773
Query 520 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 579
|||||||| ||||| ||||| |||| |||| | || ||||||||||||||||||||||||
Sbjct 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833
Query 580 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 638
||||| || |||| |||||| ||||||||||||| || |||||||| ||| |||||||
Sbjct 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892
Query 639 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 695
| |||||||| || |||||||| | ||||||||||| || | || ||| || || | |
Sbjct 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949
Query 696 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 754
||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| ||||||
Sbjct 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007
Query 755 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 813
| | |||| || | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064
Query 814 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 851
||| | || | ||||||||||||||||||||||||||||
Sbjct 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5