BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490157

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05070.1 | Symbols:  | Wound-responsive family protein | chr...   695    0.0  


> AT4G05070.1 | Symbols:  | Wound-responsive family protein | chr4:2593595-2594119 
REVERSE LENGTH=525
Length=525

 Score =  695 bits (376),  Expect = 0.0
 Identities = 488/538 (91%), Gaps = 24/538 (4%)
 Strand=Plus/Plus

Query  1    CTCTCTTCGGAATCTGAAAAGCCAT-AATTAGTAG-AAAAAATCTAAAGAATC-GAAATT  57
            ||||||||||||||||||||||||| ||| || || ||||||||| ||| ||| ||||||
Sbjct  1    CTCTCTTCGGAATCTGAAAAGCCATAAATCAGCAGAAAAAAATCTTAAGGATCGGAAATT  60

Query  58   TATAAAATCGGATGAATAGAGTGATTAATCAGTTTTCCGGTAAGTTGATGAAGGAGAAGA  117
            | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   T-TATAATCGGATGAATAGAGTGATTAGTCAGTTTTCCGGTAAGTTGATGAAGGAGAAGA  119

Query  118  GTGTTACCGGAAGT-AGCGGCGGAGATACGACGACGACTTTAAGATCTGCCGTCAAAGAA  176
            ||||||||||  || ||||||||||||      |||||||||||||||||||||||||||
Sbjct  120  GTGTTACCGG-TGTAAGCGGCGGAGAT------ACGACTTTAAGATCTGCCGTCAAAGAA  172

Query  177  TCGGTCTCGTCGCCGCAGAGTGcgtcgtcgtcgtcgtcgGTGAGGAGGCTTAAAGGAGAT  236
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173  TCGGTCTCGTCTCCACAGAGTGCGTCGTCGTCGTCGTCGGTGAGGAGGCTTAAAGGAGAT  232

Query  237  CTGGAATCGAGTCGATTTGGTGCGGCGGCGAGTGAGAGGCTGAGACAGGCGGAGGAGTCT  296
            |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  233  CTGGAATCGAGTCGATTTGGTGCGGCGGCGAGTGAGAGGCTGAGGCAAGCGGAGGAATCT  292

Query  297  TTGAGGACTGTTATGTTTCTGAGCTGTTGGGGATCTTGTTAGATCTGGTTAAGACAATAA  356
            |||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  293  TTGAGGACGGTGATGTTTCTGAGCTGTTGGGGATCTTGTTAGATCTGGTTGAGAAAATAA  352

Query  357  TAGAAAAGAAAACGAAACGAAAACAgtttgttgtttgtgttgt-gagttt-ggatttttc  414
            ||||  |||||||||||| ||||| |||| | ||||||||| | |||||| |||||||| 
Sbjct  353  TAGATGAGAAAACGAAACCAAAAC-GTTTCT-GTTTGTGTTTTTGAGTTTTGGATTTTTG  410

Query  415  ttttctttgtgaatagcttttttttttCGTTTC-TTTGTACTTTGTGTAATT-GTGTTTT  472
            |||||| ||||||||| ||||||||||  |||| ||| | ||||||  | || |||||||
Sbjct  411  TTTTCTCTGTGAATAGTTTTTTTTTTT--TTTCGTTT-T-CTTTGT--ACTTTGTGTTTT  464

Query  473  ATGTAAATCATGTATAAAATGAAAAGTAAATCGATGAAGATAATGGTTTGTCTTCACC  530
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  465  ATGTAAATCATGTATAAAATGAAAAGTAAATCAATGAAGATAATGGTTTGTCTTCACC  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5