BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490158
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05090.1 | Symbols: | Inositol monophosphatase family prote... 1914 0.0
> AT4G05090.1 | Symbols: | Inositol monophosphatase family protein
| chr4:2609142-2611762 FORWARD LENGTH=1431
Length=1431
Score = 1914 bits (1036), Expect = 0.0
Identities = 1184/1254 (94%), Gaps = 16/1254 (1%)
Strand=Plus/Plus
Query 1 AAACCGGTTTAATTCCACCGGTTTACCTTCCGCCGTAGATATCAGCCGCAATGTACATTC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAACCGGTTTAATTTCACCGGTTTACCTTCCGCCGTAGATATCAGCCGCAATGTACATTC 112
Query 61 TCGACACCGGAGCTCGATTCTCCGCCGTCAGATTCTCACC-----T---T-CTCCT---A 108
|||||||||||||||||||||||||||||||||||||||| | | ||||| |
Sbjct 113 TCGACACCGGAGCTCGATTCTCCGCCGTCAGATTCTCACCGGTATTCAATCCTCCTCCAA 172
Query 109 CACCTCTCCGCAGACGATACTTCATCGTAAGAACTAATCTTCCGTTTCCGAAGCATCAAG 168
|| ||||||| ||||||||||||||||||||| |||||||||| || || ||||||||||
Sbjct 173 CATCTCTCCGTAGACGATACTTCATCGTAAGAGCTAATCTTCCATTCCCAAAGCATCAAG 232
Query 169 CTAAGTATCATAAAGAGCTTGAGGTCGCCATTGATGCTGTTGATAGAGCTTGTCGTCTCT 228
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 233 CTAAGTATCATAAAGAGCTTGAGGTCGCCATTGATGCTGTTGATCGAGCTTGTCGTCTCT 292
Query 229 GTGTTGATGTCAAAAGATCGCTTTTTTCTTCTAAAGAGAAGATTGTTGAGAAGAATGATC 288
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTGTTGATGTCAAAAGATCTCTTTTTTCTTCTAAAGAGAAGATTGTTGAGAAGAATGATC 352
Query 289 AAACTCCAGTTACAATTGCAGATTTTGGAGTTCAAGCTTTAGTCAGCTTGGAGCTTTCGA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AAACTCCAGTTACAATTGCAGATTTTGGAGTTCAAGCTTTAGTCAGCTTGGAGCTTTCGA 412
Query 349 AAGTGTTTCCTTCAATACCTTTGGTGGCTGAGGAAGACTCTCATTTTGTGCGTGCTAATA 408
|| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 413 AATTGTTTCCTTCAATACCATTAGTGGCTGAGGAAGACTCTCATTTTGTGCGTGCTAATA 472
Query 409 ACCTTGTAAGCTCTGTAGTAAGTGAAGTCAAATCAAAAGCAAGCATTGGAGACAATGAGT 468
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 473 ACCTTGTAAGCTCTGTGGTAAGTGAAGTCAAATCAAAAGCAAGCATTGGAGACAATCACT 532
Query 469 TGTCTGATGCTGATGTACTTGAAGCAATTGATAGAGGTGGAAAAGGTGCTTACGCGTTTT 528
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 533 TGTCTGATGCTGATGTACTTGAAGCAATTGATAGAGGTGGCAAAGATGCTTACACGTTTT 592
Query 529 GCAACAAACCAGCTACTTATTGGGTTTTGGATCCAATTGATGGCACAAGGGGGTTTCTTA 588
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 593 GCAACAAACCAGCTACTTATTGGGTTTTGGATCCAATTGATGGCACCAGGGGATTTCTTA 652
Query 589 AAGGAGATGACGCTTTATATGTGGTAGGATTGGCCCTTGTTGTAGATAATGAAATTGTGC 648
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAGGAGATGAGGCTTTATATGTGGTAGGATTGGCCCTTGTTGTAGATAATGAAATTGTGC 712
Query 649 TAGGAGTCATGGGCTGTCCAAACTGGCCAGAAGAAAT-TTCAGATGGATCCACCGGAACC 707
||||||||||||| |||||||||||||||| ||| | |||||||||||| || ||||||
Sbjct 713 TAGGAGTCATGGGTTGTCCAAACTGGCCAGGAGAT-TCTTCAGATGGATCTACTGGAACC 771
Query 708 CTAATGCTCTCGCATATTGGCTGTGGAACGTGGACCAAGAGGTTACAAAATGTCTCTGGC 767
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 CTAATGCTCTCGCATATAGGCTGTGGAACGTGGACCAAGAAGTTACAAAATGTCTCTGGC 831
Query 768 AAAGTAACCGGTGACTGGACAAGGTGTTTTGTTGATGCCTGTGTTTTAATGAACAAAGCA 827
|| ||| ||||||| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 832 AATGTAGCCGGTGATTGGATAAGGTGTTTCGTTGATGCTTGTGTTTTAATGAACAAAGCA 891
Query 828 AGGTTTTGTATACAAGAAAGCCAAATCTGGGAATCGCTTCCTCTCTCTGGTTTCTTCGAC 887
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 892 AGATTTTGTATACAAGAAAGCCAAACCTGGGAATCACTTCCTCTCTCTGGTTTCTTCGAC 951
Query 888 GCAAATA-TAGTTTTAGAGGACTTACAACATAAAGAGATTCTTCTTTTGCCCACATGTTG 946
|||| || | |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 952 GCAAGTACT-GTTTCAGAGGACTTAAAACATAAAGAGATTCTTCTTTTGCCCACATGTTG 1010
Query 947 TGGAAGTTTGTGCAAGTATCTGATGGTAGCTTCCGGTAGAGCATCAGTTTTCCTTCTCCG 1006
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1011 TGGAAGTTTGTGCAAGTATCTGATGGTAGCTTCTGGCAGAGCATCAGTTTTTCTTCTCCG 1070
Query 1007 AGCCAAAACTCAGCGAACCATAAAGTCGTGGGATCATGCTGTTGGGATCATATGTGTTCA 1066
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1071 AGCCAAAACTCAGAGAACAATAAAGTCGTGGGATCATGCTGTTGGGATCATATGTGTACA 1130
Query 1067 TGAAGCCGGAGGAAAGGTAACAGATTGGGAAGGAGATGAAATCAATTTGGAGGAAGATCA 1126
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1131 TGAAGCTGGAGGAAAGGTAACAGATTGGGAAGGAGATGAAATAAATTTGGAGGAAGATCA 1190
Query 1127 ATCAGAAAGGAGGCTCATTTTTCCCGCGGGTGGTGTTGTAGTAAGCAACGGAAGTCTACA 1186
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 1191 ATCAGAAAGGAGGCTCATTTTTCCGGCGGGCGGTGTTGTAGTAAGCAACGGAAGTTTACA 1250
Query 1187 TAATCAGATTCTTGAGATGATCACTTCTACTTCACCAACTTTTTGATTTATGAC 1240
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1251 TAATCAGATTCTTGAGATGATCTCTTCTGCTTCACCAACTCTTTGATTTATGAC 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5