BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490165
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05150.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 2414 0.0
> AT4G05150.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr4:2660338-2662908 FORWARD LENGTH=1668
Length=1668
Score = 2414 bits (1307), Expect = 0.0
Identities = 1526/1628 (94%), Gaps = 29/1628 (2%)
Strand=Plus/Plus
Query 1 AAACACAAAAATCCCCAAATTACCAAAATCCTCGGCGAC-AA-a-gag-g--agagagag 54
||| ||||||||||||||||||||||||||||||||||| || | ||| | ||||||||
Sbjct 18 AAAAACAAAAATCCCCAAATTACCAAAATCCTCGGCGACAAAGAGGAGAGATAGAGAGAG 77
Query 55 ag--aga---gaAAATAATGGCTTCGATCCTTCCGCCGGAGCTGGACAACGACTCACTGG 109
|| ||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct 78 AGAAAGAGGCGAAAATAATGGCGTCGATCCCTCCGCCGGAGCTTGACAACGACTCACTGG 137
Query 110 CATCATCGCCGAGATCGGAGTACGATAGTCAGCCACGTGTACGGTTCATGTGTACTTTCG 169
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 138 CGTCATCGCCGAGATCGGAGTACGATAGTCAGCCACGCGTACGGTTCATGTGTACTTTTG 197
Query 170 GAGGAAGGATCTTGCCTCGTCCGCCGGATAATCAGCTCTGTTACGTCGGCGGCGATAATC 229
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAGGAAGGATCTTGCCACGTCCGCCGGATAATCAGCTCTGTTACGTCGGCGGCGATAATC 257
Query 230 GTATGGTCGCTGTTCATCGTCACACTACTTTTGCTTCTCTCCTTAGTAAACTTGCTAAAC 289
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 258 GCATGGTCGCTGTTCATCGTCACACTACTTTCGCCTCTCTCCTTAGTAAACTTGCTAAAC 317
Query 290 TCTCCGGTAAAAGCAACATAAGCGTGAAGTACCAGCTACCAAACGAAGATCTTGACGCGT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCTCCGGTAAAAGCAACATAAGCGTGAAGTACCAGCTACCAAACGAAGATCTTGACGCGT 377
Query 350 TGATTTCCGTATCAACGGACGAAGATGTAGAGAACATGATGGACGAGTACGACCGCGTCG 409
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 378 TGATTTCCGTATCAACGGACGAAGATGTAGAGAACATGATGGACGAATACGACCGCGTCG 437
Query 410 CACAGAATCAAAACCCACGCGCCTCTCGTCTTCGTCTCTTTCTCTTCACCAAAAACGTCG 469
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 438 CACAGAATCAAAACCCACGCGCCTCTCGTCTTCGTCTTTTTCTCTTCACCAAAAACGTCG 497
Query 470 ACGGAGAAGAAGATAACGATAGTCGAGCTAGCAGTATCAGTTCTCTCCTCGATAGCTCCG 529
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 498 CCGGAGAAGAAGATAACGATAGTCGAGCTAGCAGTATCAGCTCTCTCCTCGATAGCTCTG 557
Query 530 TTAATCGAGAGCAGTGGTTCCTCGATGCTCTCAATCTCGGTTCTTCCGCCGCCGCAACCG 589
||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 558 TTAATCGGGAGCAATGGTTCCTCGACGCTCTTAACCTCGGTTCTTCCGCCGCCGCAACCG 617
Query 590 CAGCT-TCTAACGGCGGATCCGGTAGAGT-TTTCGAGCGCGTTAGATCTGAAGTCTCGTC 647
| | | |||||||| || ||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 618 CGG-TATCTAACGGTGGGTCCGGTAGAGTCTTT-GAGCGAGTTAGATCTGAAGTCTCGTC 675
Query 648 GATTGTTTCTGAAGTTCCTGATTATCTCTTTGGATTGGATAATTTTGATGAAACTGCTCC 707
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 676 GATTGTTTCTGAAGTTCCTGATTATCTCTTTGGATTGGATAATTTCGATGAAACTGCTCC 735
Query 708 GCCGCATGAGCTTCGTGATCGTGATCCGAGAGCTAAGATTCAACGAGAAGTCTCGACGCT 767
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 736 GCCGCATGAGCTTCGTGATCGTGATCCGAGAGCTAAGATCCAACGAGAAGTCTCGACGCT 795
Query 768 TTCGGATCCTGGTTCGCCTCGTCGCGATGTTCCTTCGCCGTATGGTTCTACGTCTTCGGC 827
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 796 TTCGGATCCTGGTTCGCCTCGTCGCGATGTTCCTTCGCCGTATGGTTCGACGTCTTCGGC 855
Query 828 TCCTGTGATGCGAACATCTACACCGGAACTTCCACCACCGGTTTTGACTAAACCAGAAAG 887
|||||||||||||| |||||||||||||||||||||||| ||||| | |||||| |||||
Sbjct 856 TCCTGTGATGCGAATATCTACACCGGAACTTCCACCACCAGTTTTTATTAAACCGGAAAG 915
Query 888 TCCAGAACCGGTTTCGACCCCTAAATCTGATTCTCAACCGGAACAAGTAATTCAACAAAG 947
|||||||||||||||||| || ||||| || ||||||||||||||||||| ||||| ||
Sbjct 916 TCCAGAACCGGTTTCGACTCCGAAATCCAATCCTCAACCGGAACAAGTAATGCAACAGAG 975
Query 948 TAATCTCCCGGTTAACACGCAATGGCAATACGCCCCAGGCCCAGGCCCACAGGTTCATTA 1007
|||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 976 TAATCTCCCGGTTAACTCGCAATGGCAATATGCCCCTGGCCCAGGCCAACAGGTTCATTA 1035
Query 1008 CCAGGGTCATACCATTCACCAAACACCGGTTTATTACGTTCCTGGTTCTGTTCCGGGTAA 1067
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1036 CCAGGGTCATACCATTCACCAATCACCGGTTTATTACGTTCCTGGTTCGGTTCCGGGTAA 1095
Query 1068 TAATATGGTTCAACCGGGAAATCATATGGTTCAACCGGGTAATCATATGGTACAACCGGT 1127
| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TCATATGGTCCAGCAAGGAAATCATATGGTTCAACCGGGTAATCATATGGTACAACCGGT 1155
Query 1128 TCAAATGCAGGGTCAGTATCTTCAACAATACCATCATGTACCAATGGGATACCACCAACC 1187
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TCAAATGCCGGGTCAGTATCTTCAACAATACCATCATGTACCAATGGGATACCACCAACC 1215
Query 1188 TCAGACTCATCAGATGGCTGGTCCGGGTCAAGTATATGGTGGAGCGGTTAGGCCGGTTAT 1247
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1216 TCAGACTCATCAGATGGCTGGTCCGGGTCAAGTATATGGTGGAACGGTTAGGCCGGTTAT 1275
Query 1248 GATGGCAGTGGATGGAATGAACCGGACGGGTTATTATGGAATGAAAACACCCGGTCCGGT 1307
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GATGGCAGTTGATGGAATGAACCGGACGGGTTATTATGGAATGAAAACACCCGGTCCGGT 1335
Query 1308 TCAAATGTATCATCAGCACCCTGGTATGGTTGTTCCTGGTGTAGAAGAACAACAA---TA 1364
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1336 TCAAATGTATCAGCATCACACTGGTATGGTTGTTCCTGGTGTAGAAGAACAACAACAATA 1395
Query 1365 CAGAACCGAGACGGATTCGGATCCGGGTCGGGCTTCTTAGCTGGTTGAAGAA-A--TATG 1421
||||||||| |||||||||||| |||||||||||||||||||| |||||||| | ||||
Sbjct 1396 CAGAACCGAAACGGATTCGGATACGGGTCGGGCTTCTTAGCTGTTTGAAGAAGAAATATG 1455
Query 1422 AAAAATAATCACATCCGGGGTTTTCGTATTTTCATTGGAGTCGTACTTATTCGTTACTGT 1481
|||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1456 AAAAATTATCACATCCGGGGTTTTCGTCTTTTCATTGGAGTCGTTCTTATTCGTTACTGT 1515
Query 1482 GTGAACTGTGTAAtattttttgtttttactctt-tattatt-attttt-tgtgtg-taat 1537
|||||||||||| ||||||||||||| ||| || || ||| |||||| ||||| ||||
Sbjct 1516 GTGAACTGTGTATTATTTTTTGTTTT-ACTTTTGTAAAATTTATTTTTGTGTGTAATAAT 1574
Query 1538 tttgtattaCAAACTGTGATGAACAGTAAAACCCAATAATAA---CATTATAATCTGTCA 1594
||||||||||||| | | |||||||||||||||||||||||| ||||||||||| |||
Sbjct 1575 TTTGTATTACAAAATATAATGAACAGTAAAACCCAATAATAATAACATTATAATCTATCA 1634
Query 1595 ATAATGAA 1602
||| ||||
Sbjct 1635 ATAGTGAA 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79116058920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5