BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490166
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05160.1 | Symbols: | AMP-dependent synthetase and ligase f... 2678 0.0
> AT4G05160.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr4:2664385-2666707 FORWARD LENGTH=1861
Length=1861
Score = 2678 bits (1450), Expect = 0.0
Identities = 1679/1791 (94%), Gaps = 9/1791 (1%)
Strand=Plus/Plus
Query 1 TCCTCCGAGATCGGAAGAA-ATGGAAAAATCCGGCTACGGCAGAGACGGAATTTACCGAT 59
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 48 TCCTCCGAGATCGGAA-AATATGGAGAAATCCGGCTACGGCAGAGACGGAATTTACCGAT 106
Query 60 CACTACGTCCGACGCTAGTTCTTCCCAAAGATCCAAACACATCGTTAGTCTCTTTCCTCT 119
|||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 CACTTCGTCCAACACTCGTTCTTCCCAAAGATCCAAACACATCGTTAGTCTCTTTCCTCT 166
Query 120 TCCGTAATTCATCGTCTTACCCATCAAAGCTTGCTATCGCCGATTCCGATTCCGGTGACT 179
||||||| || || |||||||||||||| || |||||||||||||||||| |||| || |
Sbjct 167 TCCGTAACTCCTCATCTTACCCATCAAAACTCGCTATCGCCGATTCCGATACCGGCGATT 226
Query 180 CCTTAAACTTCTCTCAGCTCAAATCCGCCGTCGCTAGACTCGCTCACGGGTTTCACCGTC 239
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 227 CCTTAACCTTCTCTCAGCTCAAATCCGCCGTCGCTAGACTCGCTCACGGATTCCACCGTT 286
Query 240 TAGGTGTTCGTAAAAACGACGTCGTGTTGATCTTCGCTCCGAATTCTTACCAATTCCCTC 299
||||| |||| |||||||||||||||||||| |||||||| || |||||||| |||||||
Sbjct 287 TAGGTATTCGCAAAAACGACGTCGTGTTGATTTTCGCTCCTAACTCTTACCAGTTCCCTC 346
Query 300 TCTGTTTCCTCGCCGTAACTGCAATCGGCGGCGTTTTCACCACCGCGAATCCTCTTTACA 359
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 347 TCTGTTTCCTCGCCGTAACCGCGATCGGCGGCGTTTTCACCACCGCGAATCCTCTTTACA 406
Query 360 CTGTGAATGAGGTTTCTAAACAGATCAAAGATTCGAATCCGAAGATTATCATCTCTGTTA 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 407 CTGTGAATGAGGTTTCGAAACAGATCAAAGATTCGAATCCGAAGATTATCATATCCGTTA 466
Query 420 ATCAATTGTTTGATAAAATCAAGGGTTTTAATCTTCCCGTTGTTCTACTTGGATCTAAAG 479
||||| |||||||||| ||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 467 ATCAACTGTTTGATAAGATCAAAGGCTTTGATCTTCCCGTTGTTCTACTTGGATCTAAAG 526
Query 480 ATTCCGTACAGATTCCTCCGGGATCGAATTCGAAGATTCTTAGTTTCAATGACGTTATGG 539
| ||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 527 ACACCGTAGAGATTCCTCCGGGATCGAATTCGAAGATTCTTAGTTTCGATAACGTGATGG 586
Query 540 AGCTCTCAGAGCCAGTTTCTGATTACCCTTTCGTTGAGATTAAGCAATCAGATACTGCTG 599
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 587 AACTCTCAGAGCCAGTTTCTGAGTACCCGTTCGTTGAGATTAAGCAATCAGATACAGCTG 646
Query 600 CATTGTTGTATTCATCAGGAACTACAGGAACAAGCAAAGGTGTTGAATTGACTCATGGGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CATTGTTGTATTCATCAGGAACTACAGGAACAAGCAAAGGTGTTGAATTGACTCATGGGA 706
Query 660 ATTTCATTGCAGCTTCGTTGATGGTGACGATGGATCAAGATCTTATGGGAGAGTATCATG 719
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 707 ATTTCATTGCAGCTTCGTTAATGGTTACTATGGATCAAGATCTTATGGGAGAGTATCATG 766
Query 720 GCGTGTTCTTGTGTTTTCTACCAATGTTTCATGTTTTTGGGTTGACTGTGATTACTTATT 779
|||| |||||||||||||| || ||||||||||||||||| ||| | |||||||||||||
Sbjct 767 GCGTCTTCTTGTGTTTTCTTCCTATGTTTCATGTTTTTGGTTTGGCAGTGATTACTTATT 826
Query 780 CTCAGCTTCAGAGAGGGAATGCTTTGGTCTCTATGGCGAAATTTGAGCTTGAGTTGGTGC 839
|||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 827 CTCAGCTTCAGAGAGGAAATGCTTTGGTTTCTATGGCGAGATTTGAGCTTGAGTTGGTGC 886
Query 840 TTAAGAACATTGAGAAGTATAGAGTCACTCATCTTTGGGTTGTTCCTCCTGTGTTCCTTG 899
||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 887 TTAAGAATATTGAGAAGTTTAGAGTTACTCATCTTTGGGTTGTTCCTCCTGTGTTCCTTG 946
Query 900 CTCTTTCCAAGCAAAGTATTGTGAAAAAGTTTGATCTTTCTTCACTTAAGTACATTGGAT 959
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 947 CTCTTTCCAAGCAGAGTATTGTGAAAAAGTTTGATCTTTCTTCACTTAAGTATATTGGTT 1006
Query 960 CAGGAGCTGCTCCTCTTGGGAAAGATTTGATGGAGGAGTGTGGAAAAAACATCCCTAATG 1019
||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||
Sbjct 1007 CAGGAGCTGCTCCTCTTGGTAAAGATTTGATGGAGGAATGTGGAAGAAACATTCCTAATG 1066
Query 1020 TTTTGCTTATGCAGGGCTATGGAATGACTGAAACGTGTGGAATTGTCTCTGTGGAAGACC 1079
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 TTTTGCTTATGCAGGGATATGGAATGACTGAAACGTGTGGAATTGTGTCTGTGGAAGACC 1126
Query 1080 CGAGACTCGGGAAACGGAACTCTGGTTCAGCTGGAATGCTTGCTCCAGGAGTTGAAGCTC 1139
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1127 CGAGACTCGGGAAACGGAACTCTGGTTCAGCTGGAATGCTTGCTCCAGGTGTTGAAGCTC 1186
Query 1140 AGATAGTTAGTGTAGAAACTGGAAAATCTCAGCCTCCAAATCAACAAGGCGAGATCTGGG 1199
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1187 AGATAGTGAGTGTAGAAACTGGAAAATCTCAGCCTCCAAATCAACAAGGAGAAATCTGGG 1246
Query 1200 TTCGAGGGCCAAACATGATGAAAGGGTATCTAAATAACCCTCAGGCTACTAAAGAAACAA 1259
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1247 TTCGAGGACCAAACATGATGAAAGGGTACCTCAATAACCCTCAGGCTACTAAAGAAACAA 1306
Query 1260 TAGATAAAAAAGGTTGGGTACATACCGGAGATCTTGGATATTTCAACGAAGATGGTAACC 1319
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TAGACAAAAAAAGTTGGGTGCATACCGGAGATCTTGGATATTTCAACGAAGATGGTAACC 1366
Query 1320 TTTATGTTGTTGATCGACTCAAAGAACTTATCAAATACAAAGGCTTCCAGGTTGCTCCAG 1379
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TTTATGTTGTTGATCGAATCAAAGAACTTATCAAATACAAAGGCTTCCAGGTTGCTCCAG 1426
Query 1380 CTGAGCTAGAAGGTCTTCTTGTATCGCATCCTGAAATACTAGATGCTGTCGTTATCCCAT 1439
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1427 CTGAACTAGAAGGTCTTCTTGTATCACATCCTGATATACTAGATGCTGTCGTTATCCCGT 1486
Query 1440 TCCCTGACGAAGAAGCAGGTGAAGTTCCAATTGCATTTGTTGTTCGATCACCAAATAGCT 1499
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1487 TCCCTGATGAAGAAGCAGGTGAAGTTCCAATTGCGTTTGTTGTTCGATCACCAAATAGCT 1546
Query 1500 CAATTACAGAGCAAGATATTCAAAAGTTCATTGCCAAACAGGTCGCTCCTTACAAAAGAT 1559
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1547 CAATAACAGAGCAAGATATTCAAAAGTTCATAGCCAAACAGGTCGCTCCTTACAAAAGAT 1606
Query 1560 TACGACGAGTGAGCTTCATCAACACA-GTTCCAAAATCTGCTGCTGGTAAAATCTTGAGA 1618
||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 1607 TACGACGAGTGAGCTTCATCAGC-CTTGTTCCAAAATCCGCTGCTGGTAAAATCTTGAGA 1665
Query 1619 AGAGAGCTTGTTCAGCAAGTACGATCCAAGATGTGAAGAAGAATCTCGGAGACC-GAAGA 1677
||||| ||||||||||||||| |||||||||||||||||| ||||| ||| | || ||
Sbjct 1666 AGAGAACTTGTTCAGCAAGTAAGATCCAAGATGTGAAGAA---TCTCGTAGAACAGA-GA 1721
Query 1678 TCAGAATCTGTGTGTTGCCTCTTTCCTTTCACCATATTTATGTACCACTTCAAATTAAAC 1737
||| ||||||||||||| ||| |||||| ||||||||||||||||| |||||| |||||
Sbjct 1722 TCAAAATCTGTGTGTTGTCTCGCTCCTTTTACCATATTTATGTACCATTTCAAAATAAAC 1781
Query 1738 GGTTACACAAACCACAAAAGTGAATAAATAATCCAATACCATAGTCAATAC 1788
| |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1782 GCTTACACAACCCACAAAAGAGAATAAATAATCCAATACCATAGTCAATAC 1832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89658173370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5