BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490167
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II su... 1325 0.0
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II sub... 459 3e-128
> AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
subunit Q-2 | chr4:2671822-2673243 REVERSE LENGTH=1037
Length=1037
Score = 1325 bits (717), Expect = 0.0
Identities = 841/899 (94%), Gaps = 16/899 (2%)
Strand=Plus/Plus
Query 1 GTCACATAACCAAACACCAAAAATTATAACTCAACAATCTTCACTAATCAAATTATTCAA 60
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 1 GTCACATAACCAAACACCAAAAATTATAACTCAAC-A-CTTCACTAATC-AATTATTCAA 57
Query 61 AGCAGAT---aaaaaaaTGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGCGCATC 117
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 58 AGCAGATAAAAAAAAAATGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGAGCATC 117
Query 118 TCAGGCTGTCCTTGAAGGAAGTCTACAGATCAATGGCTCAAACCGTTTGAACATCTCAAG 177
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 118 TCAGGCTGTCCTTGAAGGAAGTTTACAGATCAACGGCTCAAACCGTTTGAACATCTCAAG 177
Query 178 AGTCACGGTTGGATCTCAAAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGAGTCAGT 237
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 AGTCTCGGTTGGGTCTCAGAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGTGTCAGT 237
Query 238 ACCAGAAAGTAGTCGCAGGTCAGTGATCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 238 ACCAGAAAGTAGTCGCCGGTCAGTGATTGGACTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297
Query 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTCCTCCTCCACCTCC 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTGGTCCTCCACTTCC 357
Query 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATT 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGACTTTTCATTGGCATT 417
Query 418 GAAAGACAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAAGATAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477
Query 478 ATCTGCTAAAGAGATCATTAACGTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGT 537
||||||||||||||||| |||||||||||| | |||||||||||||||||||| || ||
Sbjct 478 TTCTGCTAAAGAGATCATCAACGTTAAGTCATTTATCGACAAAAAAGCTTGGCCCTATGT 537
Query 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTC 597
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTCCGTTACGATCTCAACACCGTTATCTC 597
Query 598 CGCTAAGCCTAAAGAAGAGAA--AAAGAACCTTAAAGAACTTACCGGCAA-GCTCTTCGA 654
|||||||||||| |||||||| |||| ||||||||| || |||| ||| ||| ||| |
Sbjct 598 CGCTAAGCCTAAGGAAGAGAAGCAAAG--CCTTAAAGATCTCACCG-CAAAGCTTTTCCA 654
Query 655 AACCATCGACAACTTGGACTATGCGGCGAGGTCTAAGAGCAGCCCAGATGCTGAGAAGTA 714
|||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 655 AACCATTGACAACTTGGACTATGCGGCGAGATCAAAGAGTAGCCCAGATGCTGAGAAGTA 714
Query 715 TTACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTTGGTTAATGAAGAAA 774
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 TTACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTCGGTTAATGAAGAAA 774
Query 775 GATTTGCTTTGTAATGTGTTGATGTCGATGTTATTATTATTATTACTATCCAAGTACTTT 834
|| |||| ||||||| ||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 775 GACTTGCGTTGTAATCTGTTGATGTCGATGTTATTATAATTACTGCTATCCAAGTACTTT 834
Query 835 GTCTTTCTCCTCCTCTTCTTAATTATCTGATCAAATCGGTTATTTCTAATTTCAGTTTC 893
||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 835 GTCTTTCTCCTTCTCTTCTTG-T---CTGATCAAATCGGTTATCTCTAATTTCAGTTTC 889
> AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
QA | chr4:11334402-11335773 FORWARD LENGTH=905
Length=905
Score = 459 bits (248), Expect = 3e-128
Identities = 553/695 (80%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 90 CTTCGATGGCTGGCTTACGTGGCGCATCTCAGGCTGTCCTTGAAGGAAGTC-TACAGATC 148
||||||||| ||| |||| || ||||||| ||| || ||||||||||| | || |||||
Sbjct 49 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAG-CTTAAAGATC 107
Query 149 AATGGCTCAAACCGTTTGAA---CATCT-CAAGAGTCACGGTTGGATCTCAAAGAACCGG 204
|||||||| | |||| |||| | ||| |||||| ||| ||| ||||||| | |
Sbjct 108 AATGGCTCCAGCCGTCTGAATGGC-TCTGGAAGAGTGGCGG-TGG--CTCAAAGGTCTAG 163
Query 205 ACTTGT-GATCAGGGCTCAGCAGAACGAGTCAGTACCAGAAAGTAGTCGCAGGTCAGTGA 263
|||||| | |||| ||||||| | |||| | | || | | |||| |||| ||||
Sbjct 164 ACTTGTCG-TCAGAGCTCAGC---A-GAGT--G-A--GGAGACTTCTCGCCGGTCCGTGA 213
Query 264 TCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAG 323
| ||||| || || ||||||||||| ||||| || || ||| | ||||| ||||||| |
Sbjct 214 TTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATG 273
Query 324 CTATTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCC-T--ACCTGGAACAG 380
||||| ||||||||||||| ||||||||| ||||||||||||||| | | |||| ||||
Sbjct 274 CTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCCTTCCGGTGGCCTTCCAGCTGGGACAG 333
Query 381 ATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATTGAAAGACAGATTTTACATACAAC 440
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||| |
Sbjct 334 ATAACTCAGACCAAGCAAGAGACTTTGCATTGGCATTGAAAGACAGGTTTTACTTACAGC 393
Query 441 CATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGCTAAAG-AGATCATTAAC 499
||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||| ||
Sbjct 394 CATTGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAAT 452
Query 500 GTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGTTCAGAACGATCTCCGTTT-AAG 558
|| ||| || ||||||||| ||||||||||| || ||||| |||||||| |||| |||
Sbjct 453 GTGAAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTTCGTTCCAAG 512
Query 559 AGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTCCGCTAAGCCTAAAGAAGAGAA 618
|| || || |||||||| ||||||||||| | || ||| | || || || || |||||
Sbjct 513 -GCTTCTTATCTTCGTTATGATCTTAACACAATCATTTCCTCCAAACCCAAGGATGAGAA 571
Query 619 AAAGA-ACCTTAAAGAACTTACCGGCAAGCTCTTCGAAACCATCGACAA-CTTGGACTAT 676
||| || | || || || ||| |||||||||||| ||||||||||| || ||| |||
Sbjct 572 GAAGTCAC-TCAAGGATCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTAT 629
Query 677 GCGGCGAGGTCTAAGAG-CAGCC-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTC- 732
||||||| | ||||| | | ||| ||||||||||| || | | || || |||||
Sbjct 630 GCGGCGAAGAAGAAGAGTCCTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 686
Query 733 GAGTTTGAAC-AATGTTCTTGCCAAGCTTGGTTAA 766
| ||||||| || |||||||||||||||||||||
Sbjct 687 GC-TTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5