BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490170
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05220.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1103 0.0
> AT4G05220.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:2685104-2685784
REVERSE LENGTH=681
Length=681
Score = 1103 bits (597), Expect = 0.0
Identities = 654/682 (96%), Gaps = 2/682 (0%)
Strand=Plus/Plus
Query 1 ATGACACCAGATCGAACAACTATCCCGATCCACACCAGTCCCGTGCCCCGAGCCCAACCC 60
||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1 ATGACACCAGACCGAACAACTATCCCGATCCGCACCAGTCCCGTACCCCGAGCCCAACCC 60
Query 61 ATGAAGCGTCACCATTCGGCTAGCTACTACGCTCACCGTGTCAGAGAAAGCCTCTCAACC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAAGCGTCACCATTCCGCTAGCTACTACGCTCACCGTGTCAGAGAAAGCCTCTCAACC 120
Query 121 CGGATATCGAAATTCATCTGCGCAATGTTTCTCTTGGTTTTGTTCTTTGTAGGCGTCATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGATATCGAAATTCATCTGCGCAATGTTTCTCTTGGTTTTGTTCTTTGTAGGCGTCATT 180
Query 181 GCTTTCATACTTTGGCTCAGTTTACGCCCTCATCGACCTCGGTTCCATATCCAAGACTTC 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GCTTTCATACTTTGGCTCAGTTTACGCCCTCATAGACCTCGGTTCCATATCCAAGACTTC 240
Query 241 GTGGTACAAGGTCTAGACCAGCCTACCGGAGTCGAAAACGCAAGAATTGCTTTCAATGTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGGTACAAGGTCTAGACCAGCCTACCGGAGTCGAAAACGCAAGAATTGCTTTCAATGTA 300
Query 301 ACTATACTTAACCCTAACCAACATATGGGTGTTTACTTTGATTCCATGGACGGTTTCATT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 301 ACCATACTTAACCCTAACCAACATATGGGTGTTTACTTTGATTCCATGGAAGGTTCCATT 360
Query 361 TACTACAAAGATCAACGGGTCGGGTCGATCCCGTTGCTAAACCCGTTTTTCCAG-AAGCC 419
||||||||||||||||||||||| | |||||| ||||||||||||||||||||| || ||
Sbjct 361 TACTACAAAGATCAACGGGTCGGATTGATCCCATTGCTAAACCCGTTTTTCCAGCAA-CC 419
Query 420 GACTAACACAACAATTGTGACCGGGACGCTTACTGGAGCTTCCTTAACGGTAAACAGTAA 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GACTAACACAACAATTGTGACCGGGACGCTTACAGGAGCTTCCTTAACGGTAAACAGTAA 479
Query 480 CCGTTGGACCGAGTTTTCTAATGATCGGGCTCAAGGAACCGTGGGTTTTAGGCTAGATAT 539
||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 480 CCGCTGGACCGAGTTTAGTAATGATCGGGCTCAAGGAACCGTGGGTTTCAGGCTCGATAT 539
Query 540 AGTTTCAAATATTCGGTTTAAACTCCATAGGTGGATCAGTAAGCGCCATAGGATGCATGC 599
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 540 AGTTTCGACTATTCGGTTTAAACTCCATAGGTGGATCAGTAAGCATCATAGGATGCACGC 599
Query 600 TAATTGCGATATCGTGGTTGGACGAGACTGGTTGATCTTGCCCAAGTTTAACCATAAACG 659
||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 600 TAATTGCAACATCGTGGTTGGAAGAGACGGGTTGATCTTGCCCAAGTTTAACCATAAACG 659
Query 660 GTGTCCAGTCTACTTCACTTAG 681
||||||||||||||||||||||
Sbjct 660 GTGTCCAGTCTACTTCACTTAG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5