BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490171
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05230.1 | Symbols: | Ubiquitin-like superfamily protein | ... 841 0.0
AT4G05250.1 | Symbols: | Ubiquitin-like superfamily protein | ... 259 2e-68
AT4G05240.1 | Symbols: | Ubiquitin-like superfamily protein | ... 235 3e-61
AT4G05260.1 | Symbols: | Ubiquitin-like superfamily protein | ... 159 2e-38
> AT4G05230.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2687003-2687623 FORWARD LENGTH=621
Length=621
Score = 841 bits (455), Expect = 0.0
Identities = 571/625 (91%), Gaps = 15/625 (2%)
Strand=Plus/Plus
Query 1 ATGGATGTGTTCTTCGAGACTCGGAGCGGCTT-CACGTTCGAGATTGAATTGGGTTATTG 59
|||||||||||||||||||||||||| || || ||| |||||||||||||| ||||||||
Sbjct 1 ATGGATGTGTTCTTCGAGACTCGGAGTGG-TTCCACATTCGAGATTGAATTAGGTTATTG 59
Query 60 GGATACAGTTTTGGAGATCAAA-AAGAAGATCGAGAAGTATCAACAAATCCCTGTTTCCA 118
||||||||| |||||||||||| || ||||||||||||||||||| ||||| |||||||
Sbjct 60 GGATACAGTGTTGGAGATCAAACAA-AAGATCGAGAAGTATCAACGTATCCCAGTTTCCA 118
Query 119 AACAAACCCTTTTCTTTCAAGGCAATGTTCTTCAAGATCATCTTGATATCGAACAGTGTG 178
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 AACAAACCCTTTTATTCCAAGGCAATGTTCTTCAAGATCATCTTGATATCGAACAATGTG 178
Query 179 TGATCCTCAACCACTCTCGTATCCAACTTTTCATCTCTTCTCCCGACCAAAACCGTAACA 238
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 179 TGATCCTTAACCACTCTCGTATCCAACTTTCCATCTCTTCTCCCGACCAAAGCCGTAACA 238
Query 239 A--T-CAAGTGTTCAAAACCGAGCAATCTCC-ACAGTCAAACTCAAAAGAACAGATCACT 294
| | |||||||||||||||||||||| ||| ||||||||| |||| |||||||| | |
Sbjct 239 ACATTCAAGTGTTCAAAACCGAGCAAT-TCCCACAGTCAAATTCAACAGAACAGA-C-C- 294
Query 295 AATAATGGTCATCAAGATTCACCTGTGATGATGCCAATGAGcaacaacaacaacaacaac 354
| ||| |||||||| || ||| | |||||||| |||||||||||||||||||||||||||
Sbjct 295 AGTAACGGTCATCATGAATCAACAGTGATGATCCCAATGAGCAACAACAACAACAACAAC 354
Query 355 --CCA-AAGAAGCTGAGAGTAATGGTGCTACCAAAATGCGGGACTAGGAAGATTCCGGTG 411
|| ||||||||||||||||||||| | || |||| ||||||||||||||||||||||
Sbjct 355 AACCCGAAGAAGCTGAGAGTAATGGTGTTGCCGAAATCCGGGACTAGGAAGATTCCGGTG 414
Query 412 GAGGTGAACGCAGGGGATAACGTTGGAGAGCTGAGGAAAGAGCTGGCTAAGATTCAACAG 471
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 415 GACGTGAACGCAGGGGATAATGTTGGAGAGCTGAGGAAAGAGTTGGCTAAGATTCAACAG 474
Query 472 AGGTTACAATTAAGTCTGCCTCAAGAAGGGTATTTCTTTATATACAAACAGAATGTAATG 531
||||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 475 AGGTTTCAGTTAAGTCTGCCTCAAGAAGGCTATTTCTTTATCTATAAACAGAATGTAATG 534
Query 532 GACGAAAACCGGTCATTCCGGTGGCACCGTGTTGATCACGGCGACACGATTGAGATTTTC 591
|| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 535 GATGAAAACAGGTCATTCCGGTGGCACCGTGTTGATCAAGGCGACACAATTGAGATTTTC 594
Query 592 AACGGAAGTGTTTCCGGTGGCTCTT 616
|||||||||||||||||||||||||
Sbjct 595 AACGGAAGTGTTTCCGGTGGCTCTT 619
> AT4G05250.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2691460-2692416 FORWARD LENGTH=957
Length=957
Score = 259 bits (140), Expect = 2e-68
Identities = 183/204 (90%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTGTTCTTCGAGACTCGGAGCGGCTTCACGTTCGAGATTGAATTGGGTTATTGG 60
|||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||
Sbjct 1 ATGGATGTGTTCTTCGAGACTCAGAGTGGCGACAAGTTCGAGATTGAATTGGGTTATTGG 60
Query 61 GATACAGTTTTGGAGATCAAAAAGAAGATCGAGAAGTATCAACAAATCCCTGTTTCCAAA 120
|||||| | |||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 61 GATACAATGTTGGAGATCAAAGAGAAGATCGAGAAGTATCAATGTATCCCTGTTTCTAAA 120
Query 121 CAAACCCTTTTCTTTCAAGGCAAT-GTTCTTCAAGATCATCTTGATATCGAACAGTGTGT 179
|||||||| |||| ||||| | | |||||||||||||||||||||||| |||| |||||
Sbjct 121 CAAACCCTAATCTTCCAAGG-AGTTGTTCTTCAAGATCATCTTGATATCAAACAATGTGT 179
Query 180 GATCCTCAACCACTCTCGTATCCA 203
||||||||||||||||| ||||||
Sbjct 180 GATCCTCAACCACTCTCATATCCA 203
> AT4G05240.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2688200-2689018 FORWARD LENGTH=594
Length=594
Score = 235 bits (127), Expect = 3e-61
Identities = 211/251 (84%), Gaps = 8/251 (3%)
Strand=Plus/Plus
Query 36 GTTCGAGATTGAATTGGGTTATTGGGATACAGTTTTGGAGATCAAAAAGAAGATCGAGAA 95
||||||||||||||||||||| ||||||||||| || || |||||| |||||||||||||
Sbjct 207 GTTCGAGATTGAATTGGGTTACTGGGATACAGTGTTAGAAATCAAACAGAAGATCGAGAA 266
Query 96 GTATCAACAAATCCCTGTTTCCAAACAAACCCTTTTCTTTCAAGGCAATGTTCTTCAAGA 155
|||||||| |||| ||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 267 GTATCAACGTATCCTTGTTTACAGACAAACCCTTTTCTTCCAAGGCAATGTTCTTCAAGA 326
Query 156 TCATCTTGATATCGAACAGTGTGTGATCCTCAACCACTCTCGTATCCAACTTTTCATCTC 215
|||||||||||||||||| ||||||||||| |||||||||| | || || | ||| |
Sbjct 327 TCATCTTGATATCGAACAATGTGTGATCCTTAACCACTCTCTTCTCAAAGTATTCGTAGA 386
Query 216 TTCTC-CCG-A-CCAAAA-C-CGT-AACAATCAAGTG-TTCAAAACCGAGCAATCTCCAC 268
| || ||| | || || | || ||| ||||| || |||||| ||||| |||||||||
Sbjct 387 TCCTTACCGTAACCCTAATCACGACAACGATCAAATGCTTCAAA-CCGAGGAATCTCCAC 445
Query 269 AGTCAAACTCA 279
|| |||||||
Sbjct 446 CGTTAAACTCA 456
> AT4G05260.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2693680-2694459 FORWARD LENGTH=780
Length=780
Score = 159 bits (86), Expect = 2e-38
Identities = 143/170 (84%), Gaps = 5/170 (3%)
Strand=Plus/Plus
Query 1 ATGGATGTGTTCTTCGAGACTCGGAGCGGCTTCACG-TTCGAGATTGAATTGGGTTATTG 59
|||||||||| |||||| |||| || ||| | | || | |||||||| ||||| ||
Sbjct 1 ATGGATGTGTACTTCGAAACTCAGAATGGCAGAAAGTTTTG-CATTGAATTAGGTTACTG 59
Query 60 GGATACAGTTTTGGAGATCAAAAAGAAGATCGAGAAGTATCAACAAATCCCTGTTTCCAA 119
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 60 GGACACAGTGTTGGAGATCAAAAAGAAGATCGAGAAGTATCAACGTATCCCTGTTCCCAA 119
Query 120 ACAAACCCTTTTCTTTCAAGGCAATGTTCTTCAAGATCATCTTGATATCG 169
|||||||||||||| | ||||||| |||| |||| |||||||||||||
Sbjct 120 TCAAACCCTTTTCTT-C--GGCAATGCTCTTGAAGACCATCTTGATATCG 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5