BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490172
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05310.1 | Symbols: | Ubiquitin-like superfamily protein | ... 628 3e-179
> AT4G05310.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2714765-2716012 FORWARD LENGTH=1248
Length=1248
Score = 628 bits (340), Expect = 3e-179
Identities = 581/688 (84%), Gaps = 54/688 (8%)
Strand=Plus/Plus
Query 1 ATGAAGTTCCTCGTCGAGATTCTGAGTGGTTCATTGTTCGAGATTGAACTGGATCGCAAA 60
|||||||| | |||||||||||| ||||||||| ||||||||||||| |||| |||| |
Sbjct 1 ATGAAGTTTGTGGTCGAGATTCTGGGTGGTTCATCGTTCGAGATTGAAGTGGAACGCACA 60
Query 61 GATACATTGTTAGTGGTCAAACAGAGGATCGAGAAGTCTCAACGTATCCCTGTTTCGAAA 120
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 61 GATACATTGTTAGTGGTCAAACAGAAGATCGAGAAGTCTCAACGTGTCCCAGTTTCGAAA 120
Query 121 CAAACCCTTATCGTCGACGGTATTTTTATTCTTCGAGAGGATCTTAACCTCGACCAATGC 180
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CAAACCCTTATCGTCGACGGCATTTTTATTCTTCGAGAAGATCTTAACCTCGACCAATGC 180
Query 181 CAGATCGTCCACGATTCTCAAATCCAGCTCGAAGTCTCTCCTGACGTGAACCATAATCAC 240
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 181 CAGATCTTCCACGATTCTCAAATCCAACTCGAAGTCTCTCCTGACGTGAACCCTATTCAC 240
Query 241 AACGGCAACGATCAAATGCCGGAAACAGAGCAA--T-CTCCAGCACCGTGGATTTCAGTT 297
||| | |||||||||| ||| ||||||||||| | |||||||||||||||||||||||
Sbjct 241 AACAACGACGATCAAATCCCGCAAACAGAGCAATCTCCTCCAGCACCGTGGATTTCAGTT 300
Query 298 GAAGAGTACTTTG-AGAGGAAAGGTTGGCCTTTGACAGCCGAAGAGATCAGAAAGATTTA 356
||||||||||||| || | ||| |||||||||||||| ||||||||||||||||||||
Sbjct 301 GAAGAGTACTTTGCGGA-GCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359
Query 357 CAGTTATCGGCCT--G--------AGACA--A-T--G---CTAGA----CAT----CA-A 389
||||||||||||| | ||||| | | | | ||| ||| || |
Sbjct 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCATCAAACAGA 419
Query 390 GCAATCTCCACCGTCAAACTCAGTCAAAGAGACCATTAACATTCAAGATTCGTCTGTGAA 449
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 GGAATCTCCACCGTCAAACTCAGTCAAAGAGACCGTTAACATTCAAGATTCGTCTGTGAA 479
Query 450 GTTTGCGAATAAGAACAACAACGATCTAGTGCCTCCA-C-A-GTCAAACTC-A--GTCAA 503
|||||||| ||||||||||||||||| |||||||||| | | | ||| || | |||||
Sbjct 480 GTTTGCGAGTAAGAACAACAACGATCAAGTGCCTCCAACGAAG-CAATTTCCACAGTCAA 538
Query 504 AAATA-TCACTAAGAGCAACAAAAGAGGCCGGAAGAAGAG---GA-AGATGGTAGTAGGT 558
| || ||| |||| || | || | | || ||||| | ||||| ||||| |
Sbjct 539 ACTTAGTCAAAAAGATCA-CTAACG-GAAAA-AA-AAGAGTCCGGCAGATGCTAGTATAT 594
Query 559 GTGTCGCCATATTCTGGTATGAATGAAGTCCCGAA-GAATATTCTGCTG-ACTGTGATA- 615
|||||||||||| ||||||||||||||||||| || |||||||||| || | |||| |
Sbjct 595 GTGTCGCCATATCCTGGTATGAATGAAGTCCC-AACGAATATTCTGGTGCAA-GTGAAAG 652
Query 616 TCTACGGATGAGGTGAAAACACTGAGAG 643
| ||||||||||||||||||||||||||
Sbjct 653 T-TACGGATGAGGTGAAAACACTGAGAG 679
Score = 507 bits (274), Expect = 1e-142
Identities = 430/499 (86%), Gaps = 36/499 (7%)
Strand=Plus/Plus
Query 666 GAGAGGTGATATAG-AACTGCCTCAAGAAGGGTATTTCTTTACACACAATAATCAAGTAT 724
||||||| ||| | ||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 675 GAGAGGTCTTAT-GAAACTGGCTCAAGAAGGGTACATCTTTACGCACAATAATCAAGTAT 733
Query 725 TGAACGAAGATCAGTCATACGAGTGGAACGGTGTTAAACCCGTGGATACAATTGTGATGG 784
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
Sbjct 734 TGAACGAAGATCAGTCATACGAGTGTAACAGTGTTAAACCCTTGGATACAATTGTGATTG 793
Query 785 TTCCCACACATGTTATCCAAGAGACCTGTAAGATTCAAGATTCTTCTGTGACGGTTCAAG 844
|||||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 794 TTCCCAGACGTGTTATCCAAGAGACCAGTAAGATTCAAGATTCGTCTGTGACGGTTCAAG 853
Query 845 TGCCTCAAACGGAGCAACCTCCA--G-------C-GTC----A-A--ACT----C--A-A 880
||||||||| ||||||| ||||| | | ||| | | ||| | | |
Sbjct 854 TGCCTCAAATGGAGCAATCTCCAGCGTCAAACTCAGTCAAAGAGATCACTGACCCGAAGA 913
Query 881 AGAA-A--AAAGTATATGTGATGCCATTTTCAAGTGAGTGTAAAGGAT-TGAAGAGATTT 936
|||| | |||||||||||| || || |||||||||||||||||| | |||||||||||
Sbjct 914 AGAAGATTAAAGTATATGTGGTGGCAGCTTCAAGTGAGTGTAAAGG-TCTGAAGAGATTT 972
Query 937 ATTGAGGTGGAAGTGAGCTCGACGGATCAAGTGAAAATACTGAGAAACGAGTTGGTTGAA 996
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 973 ATTGAGGTGGATGTGAACTCGACGGATCAAGTGAAAATACTGAGAACCGAGTTGGTTGAA 1032
Query 997 AGTATTCGGAGGGGTTATATAA-AACTGCCTCATGAAGGATATTTCTTTGCGGACAGAAT 1055
||| |||||||||| |||||| || ||||||| |||||||||||||||| ||||||||
Sbjct 1033 AGTGGTCGGAGGGGTCATATAAGAA-TGCCTCACGAAGGATATTTCTTTGTGGACAGAAA 1091
Query 1056 GAAGGAGAGAATATTGAATGAAGATCAGTCATTCGAGTGGAACGGTGTTCTTGGTCCAGC 1115
||| |||||| ||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1092 GAAAGAGAGAGTATTGAACGAAGATCAGTCATTCGAGTGGAACCGTGTTCTT---CCAGC 1148
Query 1116 CGAAACAGTTTATATGGTT 1134
|||||||||||||||||||
Sbjct 1149 CGAAACAGTTTATATGGTT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5