BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490178
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:... 1546 0.0
AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:... 470 2e-131
> AT4G05060.1 | Symbols: | PapD-like superfamily protein | chr4:2590065-2592163
REVERSE LENGTH=1207
Length=1207
Score = 1546 bits (837), Expect = 0.0
Identities = 1009/1086 (93%), Gaps = 36/1086 (3%)
Strand=Plus/Plus
Query 4 AACACAATCAAATCCACTTTAATCCTT-CC-C-CTCACATCCGATTCTCCGATGGCATTA 60
||| ||||||||||||||||||||||| || | ||| | ||||||||||||||||| |||
Sbjct 113 AACCCAATCAAATCCACTTTAATCCTTCCCTCTCTCGCGTCCGATTCTCCGATGGCTTTA 172
Query 61 ACGGAGGAAAAATCCGGTTCCGATGGTCGCCGTCGGGGCAAATTCAAGCTCCCCTTTCGA 120
|||||||| ||||| | |||||||||||| ||| ||||||||||||| || || ||||||
Sbjct 173 ACGGAGGACAAATCAGATTCCGATGGTCGACGTTGGGGCAAATTCAAACTTCCATTTCGA 232
Query 121 AACTCCAACGCTCAAGCTACC-TCATCCTCCTCCG-CCTCTTCCATGGCTActtcttctt 178
||||| || | |||||| || ||| |||||| || ||||||||||||||| |||
Sbjct 233 AACTCTAATTCCCAAGCT-CCTTCAGCCTCCT-CGTCCTCTTCCATGGCTA------CTT 284
Query 179 cttcttcttctGCAACATCTTCTCATCTCAATCAAAATTACATTCATCAATCTCGCCATT 238
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 285 CTTCTTCTTCTGTAACATCTTCTCATCTAAATCAAAATTACATTCATCAATCTCGCCATT 344
Query 239 TCCAATATCACGGACCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCACCG 298
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 345 TTCAATATCACGGTCCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCGCCG 404
Query 299 CCACGATCCCTTCCATGTCATCTGTCGCGAGATCACTTCTTCCAACAAAACGCCGATTAA 358
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 405 CCACGATCCCTTCTATGTCATCTGTCGCGAGATCGCTTCTTCCAACAAAACGCCGATTAA 464
Query 359 AGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGGGAAGCAAGTCAGGAGTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGGGAAGCAAGTCAGGAGTG 524
Query 419 CCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAAGTTTCAAACAACAGAAC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 525 CCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAAGTTTCAAACAACAGTAC 584
Query 479 CAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTTCTCCTGGGGAAGAAATTATCG 538
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 585 CAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTGCTCCCGGGGAAGAAATTATCG 644
Query 539 CAACCGTTTTTAAGTTTGTTGAGCCTCCTGAGAATAATGAAAAGCCGATGGAACAAAAGA 598
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 645 CAACTGTTTTCAAGTTTGTTGAGCCTCCTGAGAATAATGAAAAGCCAATGGAACAAAAGA 704
Query 599 GCGGGGTTAAGTTTAAAATCATGAGCCTGAAGATGAAAGTCCCAACAGACTATATGCCTG 658
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 705 GCGGGGTTAAGTTTAAAATCATGAGCTTGAAGATGAAAGTTCCAACAGACTATATGCCTG 764
Query 659 AGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGTAATGCGTGTGGTATTCT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGTAATGCGTGTGGTATTCT 824
Query 719 TGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAGTCAATTGGCTGAAGCGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAGTCAATTGGCTGAAGCGG 884
Query 779 ATGCTGCAGATGAAGCACGGAAGAAAGCATCAGAGGGTATTGTTGGTCCAAAGCCAATTG 838
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGCTGCAGATGAAGCACGGAAAAAAGCATCAGAGGGTATTGTTGGTCCAAAGCCAATTG 944
Query 839 GAGAAGGGCTTGTGATCGATGAATGGAAGCAACGACGAGAGAGATATCTTGCACAGCAAC 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 945 GAGAAGGGCTTGTGATCGATGAATGGAAGCAACGCCGAGAGAGATATCTTGCACAACAAC 1004
Query 899 AAGGAGGAGTAGACGCGGCTTGAAAATAAAAGACCACCAAGACCAAAAAgtgtgtgtgtg 958
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 1005 AAGGAGGAGTAGACGCTGCTTGAAACTTAAAGACCACCAAGACCAAAAAGTGTGTGTATG 1064
Query 959 tgtttt--------------gtgcccagtcaaaatgtgttgtgtgAGGAGATAGAAGATT 1004
|||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1065 TGTTTTTTTTTTTTAATTTTGTGCCGAGTCAAAATGTGTTGTGTGACGAGATAGAAGATT 1124
Query 1005 GTATTTATGATCA---------GTAATCCCAAAATTATTTGCAGAGGAGATCATCGTGTT 1055
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTATTTATGATCAATTATCTTAGTAATCCCAAAATTATTTGCAGAGGAGATCATCGTGTT 1184
Query 1056 TGGTAA 1061
||||||
Sbjct 1185 TGGTAA 1190
> AT4G21450.3 | Symbols: | PapD-like superfamily protein | chr4:11425957-11428386
FORWARD LENGTH=1385
Length=1385
Score = 470 bits (254), Expect = 2e-131
Identities = 434/519 (84%), Gaps = 19/519 (4%)
Strand=Plus/Plus
Query 392 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 451
||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||
Sbjct 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654
Query 452 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 511
|||| || |||||||||||||| | || ||||||||||| ||||| || |||||||||
Sbjct 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714
Query 512 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 570
||||| ||||||| | ||| ||||| || || || ||||| ||||||||||||||||||
Sbjct 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773
Query 571 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 630
|||||||| ||||| ||||| |||| |||| | || ||||||||||||||||||||||||
Sbjct 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833
Query 631 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 689
||||| || |||| |||||| ||||||||||||| || |||||||| ||| |||||||
Sbjct 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892
Query 690 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 746
| |||||||| || |||||||| | ||||||||||| || | || ||| || || | |
Sbjct 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949
Query 747 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 805
||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| ||||||
Sbjct 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007
Query 806 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 864
| | |||| || | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064
Query 865 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 902
||| | || | ||||||||||||||||||||||||||||
Sbjct 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5