BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490180
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720561... 1977 0.0
AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type ... 1038 0.0
AT2G14490.1 | Symbols: | pseudogene, ARF GTPase-activating dom... 292 4e-78
> AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720561-2723125
REVERSE LENGTH=1322
Length=1322
Score = 1977 bits (1070), Expect = 0.0
Identities = 1233/1306 (94%), Gaps = 34/1306 (3%)
Strand=Plus/Plus
Query 1 GCCATTTTTCTTGAAAATTCATCTCTTTCCTTTGTCTATCTATCCTCCCTTCCCCAACAT 60
|||| |||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 1 GCCAATTTTCTTGTAAATTCACCTCTTTCCTTCGTCTATCTATCCTCCCTTCCGCAACAT 60
Query 61 TGATTTTGTTTGATGATTGTTGGGTTTTGAAAGAAGAGCAATGAGCAATTATGCAGCCGG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGATTTTGTTTGATGATCGTTGGGTTTTGAAAGAAGAGCAATGAGCAATTATGCAGCCGG 120
Query 121 ACTCGGTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCGGTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAA 180
Query 181 CCGAGTCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CCGAGTCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGAGT 240
Query 241 ATTCATTTGCTTAAAATGTTGCGGTGTGCACAGAAGCCTCGGCACTCATATCTCAAAGGT 300
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 241 ATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGGT 300
Query 301 TTTGTCTGTGACACTTGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGG 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGTCTGTGACACTAGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGG 360
Query 361 AGGAAATGCGTCTGCTAATTCAATTTACGAAGCTTTTGTACCTGACACATGCTCTAAGCC 420
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 361 AGGAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGTGCTCTAAGCC 420
Query 421 TGGACCTGATGTTAGTCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCA 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCA 480
Query 481 AGAGTTTCTGAAGCCAAGCTTGCGGATTACATCCGGGAAATGCTCAACAAAGAGTTCAGC 540
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 AGAGTTTCTGAAACCAAGCTTGCGGATTACATCCGGGAAAGGCTCAACAAAGAGTTCAGC 540
Query 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600
Query 601 ACAGAAGATATTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAA 660
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAGACGATGTTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAA 660
Query 661 GAAAGGTACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAGGGAACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720
Query 721 TCTAGGGAAGCAAAAACTTCAGACAACTGTTGTGAATAGTAATTTGAACCCGGTATGGAA 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 TCTAGGGAAGCAAAAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAA 780
Query 781 TCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTGTATGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTGTATGA 840
Query 841 TTATGATACATTTTCTGCTGATGACATAATGGGGGAAGCAGAGATTGATATCCAACCTTT 900
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 841 TTATGATACATTTTCTGCTGATGACATAATGGGAGAAGCAGATATTGATATACAACCTTT 900
Query 901 GATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATTGGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATTGGGAA 960
Query 961 ATGGCTAAAATCGCATGATAATCCACTAATAGATGACAGTATCATTAACATTGTTGATGG 1020
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 961 ATGGCTAAAATCGCATGATAACCCATTAATAGATGACAGTATCATTAACATTGTTGATGG 1020
Query 1021 GAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATTAGAGCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATTAGAGCT 1080
Query 1081 AGAAATGGAATGGCTACCACTTGACCAATAAGTGTCAAATAGGGTCTCATAACCTCTATA 1140
||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1081 AGAAATGGAATGGCTGCCACTTGACCAATAAGTGTCATATAGG-TCTCATAACCTTTATA 1139
Query 1141 AAT-T-CT--TTG--------Cttt-ttttttttt-------------g--g-aaatttt 1171
||| | || ||| |||| ||||||||| | | |||||||
Sbjct 1140 AATGTACTGATTGATTTAATTCTTTGTTTTTTTTTTTTCTCTCCATTTGTTGGAAATTTT 1199
Query 1172 cacaactcttttttgcatttttATCCTCATCCCAGAGGAAAATGTATGTTGATGTTTGTA 1231
|| || ||| ||| |||||||| ||||||| |||||| |||||||| ||||||||||||
Sbjct 1200 CAAAAATCTCTTT-GCATTTTTTTCCTCATTTCAGAGGTAAATGTATTTTGATGTTTGTA 1258
Query 1232 TAACCCAATGGATTACTAT--GATGTTTTTGATTGATGGAAAAAGG 1275
||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1259 TAAACCAATGGATTACTATATGATGTTTT-GATTGATGGAAAAAGG 1303
> AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type
GTPase activating protein family | chr4:11284147-11286767
FORWARD LENGTH=1377
Length=1377
Score = 1038 bits (562), Expect = 0.0
Identities = 899/1060 (85%), Gaps = 29/1060 (3%)
Strand=Plus/Plus
Query 67 TGTTTGATGATTGTTGGGTT-TTGAAAGAAGAGCAATGAGCAATTATGCAGCCGGACTCG 125
||||||||||||| | ||| || |||||||||||||| ||| || |||||||||||
Sbjct 97 TGTTTGATGATTGCT-AGTTCTT--TAGAAGAGCAATGAGTTATTCTGGAGCCGGACTCG 153
Query 126 GTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAG 185
| |||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||
Sbjct 154 GAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAG 213
Query 186 TCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGGGTATTCA 245
|||||||||||||||||||| | |||||||| ||||| ||||| ||||| || || || |
Sbjct 214 TCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTGGAGTGTTTA 273
Query 246 TTTGCTTAAAATGTTGCGGTGTGCACAGAAGCCTCGGCACTCATATCTCAAAGGTTTTGT 305
| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| || |
Sbjct 274 TATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAAAGGTCTTAT 333
Query 306 CTGTGACACTTG-ATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGA 364
| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 334 CCGTGACA-TTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAATTGGAGGA 392
Query 365 AATGCGTCTGCTAATTCAATTTACGAAGCTTTTGTACCTGACACAT-GCTCTAAGCCTGG 423
||||| ||||| |||||||||||||| || ||| | ||||| | | |||||||||||||
Sbjct 393 AATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGA-AGGTAGCTCTAAGCCTGG 451
Query 424 ACCTGATGTTAGTCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGA 483
|||||||| ||||||||||||||||||||| ||||||||| | |||||||| | |||||
Sbjct 452 ACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGCACCAAGA 511
Query 484 GTTTCTGAAGCCAAGCTTGCGGATTACATCCGGGAAATGCTC-A--ACAAAGAGTTCAGC 540
||||||||| |||||||||||||| ||||||| || |||| | ||||||| | ||||
Sbjct 512 GTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGACTCCAGC 571
Query 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600
|||||| |||| ||||| |||| |||||| | ||||| |||||||| |||||||||||
Sbjct 572 ATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATTCATCATC 631
Query 601 --A-CAGAAG-ATATTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTA 656
| ||| | | | || | |||| ||||| ||||||||||||||||||||||||||||
Sbjct 632 GCAACAGCCGCA-ACTT--G-AAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGACTA 687
Query 657 TTAAGAAAGG-TACTAACT-TAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGT 714
|||| ||||| ||| || | | || ||| |||| ||||||||||||||||| ||||||||
Sbjct 688 TTAA-AAAGGGTACCAA-TATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTGT 745
Query 715 GTTGAATCTAGGG-AAGCAAAAA-CTTCAGA-CAACTGTTGTGAATAGTAATTTGAACCC 771
||||| |||||| || || || || || | | ||||| ||||| || || || |||||
Sbjct 746 GTTGACTCTAGGACAA-CAGAAGGCT-CA-ATCTACTGTAGTGAAGAGCAACTTAAACCC 802
Query 772 GGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCA 831
|| |||||| | ||||||||||| ||||||||| | | ||||||| | |||||||||||
Sbjct 803 TGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCA 862
Query 832 AGTGTATGATTATGATACATTTTCTGCTGATGACATAATGGGGGAAGCAGAGATTGATAT 891
||||| ||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 863 AGTGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATAT 922
Query 892 CCAACCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCA 951
||| ||| |||| |||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 923 CCAGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCA 982
Query 952 GATTGGGAAATGGCTAAAATCGCATGATAATCCACTAATAGATGACAGTATCATTAACAT 1011
|||||| |||||||| |||||||| || ||| | || ||||| || || ||||| |||||
Sbjct 983 GATTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACAT 1042
Query 1012 TGTTGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGA 1071
|| ||||| |||||||| || |||||||| ||||||||||||||||| || ||||| ||
Sbjct 1043 TGCAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGA 1102
Query 1072 ATTAGAGCTAGAAATGGAATGGCTACCACTTGACCAATAA 1111
| |||| ||||||||||| |||||||| ||||| ||||||
Sbjct 1103 ACTAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAA 1142
> AT2G14490.1 | Symbols: | pseudogene, ARF GTPase-activating domain-containing
protein, similar to zinc finger and C2 domain
protein GI:9957238 from (Arabidopsis thaliana); blastp match
of 53% identity and 4.3e-27 P-value to GP|19386828|dbj|BAB86206.1||AP003735
putative zinc finger and C2 domain protein
{Oryza sativa (japonica cultivar-group)} | chr2:6164999-6165986
REVERSE LENGTH=988
Length=988
Score = 292 bits (158), Expect = 4e-78
Identities = 164/167 (98%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 297 AGGTTTTGTCTGTGACACTTGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 AGGTTTTGTCTGTGACACTTGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAA 880
Query 357 TTGGAGGAAATGCGTCTGCTAATTCAATTTACGAAGCTTTTGTACCTGACACATGCTCTA 416
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 881 CTGGAGGAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTGTACCTGACACATGCTCTA 940
Query 417 AGCCTGGACCTGATGTTAGTCATGACCAGCGTATGAGATTCATTAGG 463
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 941 AGCCTGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGG 987
Score = 152 bits (82), Expect = 8e-36
Identities = 84/85 (99%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 138 CAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGTCTGCGCTGATT 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGTCTGCGCTGATT 232
Query 198 GTGGCGCTTCTGATCCTAAATGGGC 222
|||||||||||| ||||||||||||
Sbjct 233 GTGGCGCTTCTGTTCCTAAATGGGC 257
Score = 115 bits (62), Expect = 1e-24
Identities = 73/78 (94%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 223 ATCAGCAAATATCGGGGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGAAGCCTCGG 282
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 682 ATCAGCAAATATCAGAGTATTCATTTGCTTAAAA-GTTGCGGTGTGCACAGAAGCCTCGG 740
Query 283 CACTCATATCTCAAAGGT 300
||||||||| | ||||||
Sbjct 741 CACTCATATTTTAAAGGT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5