BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490181

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05370.1 | Symbols:  | BCS1 AAA-type ATPase | chr4:2736135-2...   660    0.0  


> AT4G05370.1 | Symbols:  | BCS1 AAA-type ATPase | chr4:2736135-2736584 
FORWARD LENGTH=450
Length=450

 Score =  660 bits (357),  Expect = 0.0
 Identities = 410/436 (94%), Gaps = 2/436 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTCTAGTTTCTTCACAAAAATTCCTTCACTCTCTGCAATTTTCTCTGTTTACACA  60
            |||||||| | | ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  1    ATGGCGTCAAATCTCTTCACAAAAATCCCTTCACTCTCTGCAATTTTCTCGGTTTACACA  60

Query  61   TCTCTCTCTGCCTTCACGATCCTCTTAAAAACCATTCTCCATGAGATCATTCCCGACCAA  120
            ||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||  |||
Sbjct  61   TCTCTATCTGCCTTCACGATCCTCTTCAAAACCATTCTCTATGAGTTCATTCCCG-TCAA  119

Query  121  -ATCCGTGACTTTATCATCTCCAAATTCACAGACTACTTTTCTTCTTATTTCAACTCCAA  179
             ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct  120  TATCCGTGACTTTATCATCTCCAAATTCACAGACTACTTTTCTTTTTATCTCAACTCCAA  179

Query  180  TTTCACGTTCATCATCGAGGAACAGAGCGATTACGTTATGAATCAGACTTTCCGTGCAGC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTTCACGTTCATCATCGAGGAACAGAGCGATTACGTTATGAATCAGACTTTCCGTGCAGC  239

Query  240  TCAAGTTTACTTGCCGACTCTTCTCCCCAGAATCTCCACCAGAAGTCTCCTGGTCAGTTC  299
             |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct  240  CCAAGTTTACTTGCCGACTCTTCTCTCCAGAATCACCACCAGAAGTCTCCTCGTCAGTTC  299

Query  300  GAACGACCTCAAGAATCCGTTTGCTAAACCCAAATTTGGAATCCCAGTCAAAGCCAAAAT  359
            || |||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct  300  GAGCGACCTCAAGAATCCGATGGCTAAACCGAAATTCGGAATCCCAGTCAAAGCCAAAAT  359

Query  360  AATCGATGAATTCGAAGGGATTCATCTTGAATGGACTCTTCTCTCTGCAAAAGATAATGA  419
             |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  360  CATCGATGAATTCGAAGGGATTCGTCTTGAATGGACACTTCTCTCTGCAAAAGATAATGA  419

Query  420  TAATCCTTACCAGAGT  435
            ||||||||||||||||
Sbjct  420  TAATCCTTACCAGAGT  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5