BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490185
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05400.1 | Symbols: | copper ion binding | chr4:2741186-274... 1402 0.0
> AT4G05400.1 | Symbols: | copper ion binding | chr4:2741186-2742949
FORWARD LENGTH=1044
Length=1044
Score = 1402 bits (759), Expect = 0.0
Identities = 935/1016 (92%), Gaps = 27/1016 (3%)
Strand=Plus/Plus
Query 1 AATCTCCGTACTCAAACACCATTTTCAGACGAAAAATCAGAAATCAGATACTCAGGTGAA 60
|||||| |||||||| || |||||||||||| || || ||||||| |||||||||||
Sbjct 8 AATCTCTGTACTCAAGCAACATTTTCAGACG---AA--AGCAATCAGAAACTCAGGTGAA 62
Query 61 TCAGAAGCATGATTCGAGTTACGAGACCAAAACCGATTATCGAATCACTGAGTTACCACC 120
|||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
Sbjct 63 TCAGAAGCATGATTCGAGTTACGAAACCAAAAGCGATCATCGAATCACTGAGTTACCATC 122
Query 121 TTCTCCAGAGATGCTCCGCAAGCGGAACTCCTAAAGGAAAGGCAAAGCTAAAGACAGGTC 180
|| |||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 123 TTATCCAAAGATGCTCCGCAAGTGGAACTCCTAAAGGAAAAGCAAAGCTGAAGACAGGTC 182
Query 181 AGCCATTGAAGCGTAACAAAGTCTCCACCAAGAAAGGTGGTGGTGGCGGCGGCGGAGGAG 240
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |
Sbjct 183 AGCCATTGAAGCGTAACAAACTCTCCATCAAGAAA---GGTGGTGGCGGCGGCGGAGCAC 239
Query 241 CAGTTGGAGATGGAGAGGAAGCAGTTAAAGGAAAAGGAAGAATTTCCGATGAGAAGCAGA 300
| ||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 CTGTT-GA-A-GGAGAGGAAGCAGTTAAAGGAAAAGGTAGAATTTCCGATGAGAAGCAGA 296
Query 301 AGCTTTACGAGCAATGCTTAAACGCTCCTTGTCCTGTCCGTTACTTGA-CACCCAATGAG 359
| || |||||||||||||||||||||||||||||||| || ||||||| | ||||| |||
Sbjct 297 AACTCTACGAGCAATGCTTAAACGCTCCTTGTCCTGTTCGCTACTTGACCCCCCAA-GAG 355
Query 360 ATCGAGCGAGAAGCGCAACGTGAGAAGCTAGGGTTGATTAGTAAAGAGAAGCAACGAGAT 419
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 356 ATCGAGCGTGAGGCGCAACGTGAGAAGCTAGGTTTGATTAGTAAAGAGAAGCAACGAGAT 415
Query 420 ATGGAGATCCAGAAGAAAGGAGGAGCTGCTTCAATGGGAATCACCGATGAGCCGATGCGA 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 416 ATGGAGATCCAGAAGAAAGGAGGAGCTGCTTCAATGGGAGTCACCGATGAGCCGATGCGA 475
Query 480 ATTGGTACGCCGGGTTTGGATTACATTTCGTTGGGGATTTTTGAAGCTGATGAATTGCCG 539
||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 476 ATTGGGACGCCAGGTTTGGATTACATTTCGTTAGGGATTTTTGAAGCTGAGGAATTGCCT 535
Query 540 AAGTACAAGCTGACGGAAGAAGATGGAGAGAGACTTGCGAAGGAGTATAGTAAAGTGTTG 599
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAGTATAAGCTTACGGAAGAAGATGGAGAGAGACTTGCGAAGGAGTATAGTAAAGTGTTG 595
Query 600 ATGAGAGAGCATAGAGAGCGTCGTGCAGCTGAAACTGCGCTTTTGAATTTGAAGAAAGCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 ATGAGAGAGCATAGAGAGCGTCGTGCAGCTGAAACTGCGCTTTTGAATTTGAAGAAATCT 655
Query 660 GCGATTGAGGCGTTGCCGGAGAATCTGAAGAAAGCGGCATTAGAACCTGATTTGACTCCG 719
|| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 656 GCTATTGAGGCATTGCCGGAGAATCTGAAGAAGGCGGCGTTAGAGCCTGATTTGACACCG 715
Query 720 TTTCCGGCGAATCGAGGTATGGCTACTCTTACACCGCCTATTGAAGGGTATCTTGAGAAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTCCGGCGAATCGAGGTATGGCTACTCTTACACCGCCTATTGAAGGGTATCTTGAGAAG 775
Query 780 GTTATGGATGCAGCTAAGAAGAGTTCAAGTAAAGAGAAGTTGAGATGATTTCGTTTAAAG 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTTATGGATGCAGCTAAGAAGAGTTCAAGTAAAGAGAAGTTGAGATGATTTCGTTTAAAA 835
Query 840 GTTGAAGCT-TTAGTCAGAATGAAGCAGCAACGAGAC-AGAGAGAAATCAAGAAATTGTC 897
||||||||| |||||||||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct 836 GTTGAAGCTATTAGTCAGAATGGAGCAGCAACGAGACCA-AGAGACATCAAGAAATTGTC 894
Query 898 TCTAGGGTTTCCAAGCTTGACTTAAGAGAATTCATTCA--T-GTAGGCTATTGCCTCttt 954
||||||| ||| |||||||||||||||||||||||||| | ||||||| ||| |||||
Sbjct 895 TCTAGGGATTCTAAGCTTGACTTAAGAGAATTCATTCAAGTAGTAGGCTCTTG--TCTTT 952
Query 955 ttt-tttGGAAAAGCAATTTTCTTTTTT--GGACAAGT---GATCAAGTCTGTGTT 1004
||| |||||||||||||| ||||||| ||| || | |||||||||||||||
Sbjct 953 TTTGTTTGGAAAAGCAATCTTCTTTTCGCCGGATAAATTACGATCAAGTCTGTGTT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5