BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490186
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05410.1 | Symbols: YAO | Transducin/WD40 repeat-like superf... 2791 0.0
AT4G21130.1 | Symbols: EMB2271 | Transducin/WD40 repeat-like su... 457 2e-127
> AT4G05410.1 | Symbols: YAO | Transducin/WD40 repeat-like superfamily
protein | chr4:2742932-2745627 REVERSE LENGTH=1918
Length=1918
Score = 2791 bits (1511), Expect = 0.0
Identities = 1792/1926 (93%), Gaps = 25/1926 (1%)
Strand=Plus/Plus
Query 1 CGTTTTTCAGCTTCTTCCGTCGCCACTAAACCCTGAGGCTAAACCTAGACGAGTCAAAGT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CGTTTTCCAGCTTCTTCCGTCGCCACTAAACCCTGAGGCTAAACCTAGACGAGTCAAAGT 65
Query 61 GCAATAAACGTTAAACCCTAAGAagagagagagagagagaagaatgaagtacaacaacga 120
| || || |||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 66 GTAA-AATCGTTAAACCCTAAG-AGGGAGTGAGAGAGAGAAGAATGAAGTACAACAACGA 123
Query 121 gaagaagaaaggtggaggctctaagagaggaggTAAAAAGGGTTCGAATGAAAGGGATCC 180
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 124 GAAGAAGAAAGGAGGAAGCTTTAAGAGAGGAGGTAAAAAGGGTTCGAATGAAAGGGATCC 183
Query 181 ATTTTTTGAGGAAGAGCCGAAGAAACGGAGAAAAGTCAGTTACGATGACGACGATATCGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ATTTTTTGAGGAAGAGCCGAAGAAACGGAGAAAAGTCAGTTACGATGACGACGATATCGA 243
Query 241 GTCTATAGACTCTGATGCGGAAGAGAATGGATTTACTGGCGGAGACGAAGATGGGAGAAG 300
|||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 244 GTCTGTGGACTCTGATGCGGAAGAGAACGGATTTACTGGCGGAGATGAAGATGGGAGAAG 303
Query 301 AGTTGATGTGGAAGTGGTGGAGGAGGATGAGTTTGCTGATGAGACGGTGGGAGAGAAGAA 360
|||||||| |||||||| ||| || |||||||||||||||||||||| ||||||||||
Sbjct 304 AGTTGATGGGGAAGTGGAGGATGAAGATGAGTTTGCTGATGAGACGGCGGGAGAGAAGCG 363
Query 361 GAAGAGATTGACGGAGGATATGCTGAATAGACTGAGGGAAGCTAAGCGGAGAGAGCGTGA 420
|||||||||| ||||||| |||||||||||| ||||||||| | | |||||||||||||
Sbjct 364 GAAGAGATTGGCGGAGGAGATGCTGAATAGAAGGAGGGAAGCGATGAGGAGAGAGCGTGA 423
Query 421 GCAAGCGG---GtgatgatgatgatgatgaagacgatgatgaGAGTATTAAGAAGATTTT 477
| |||||| ||||||||||||||||||||| || ||||||| ||||||||||| |||
Sbjct 424 GGAAGCGGATAATGATGATGATGATGATGAAGATGACGATGAGACTATTAAGAAGAGTTT 483
Query 478 GATGCAGAAGCAGCAAGAGGAGAGTGGTAGGATTCGAAGAGTTATTGCATCCAGGGTTCA 537
||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct 484 GATGCAGAAGCAGCAGGAGGATAGTGGTAGGATTCGAAGACTTATTGCATCGAGGGTTCA 543
Query 538 GGAGCCACTAAGTACTGATGGGTTTAGTGTTATTGTCAAGCACCGACGATCTGTTGTATC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 544 GGAGCCACTAAGTACTGATGGGTTTAGTGTTATTGTCAAGCACCGACGATCTGTTGTGTC 603
Query 598 GGTAGCTTTATCGGATGATGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTGTTAT 657
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 604 GGTAGCTTTATCGGATGACGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTATTAT 663
Query 658 GCATTGGGATGTATCTTCTGGTAAAAGTGACAAATACATATGGCCAAGTGATGAAATTCT 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 664 GCATTGGGATGTATCTTCTGGTAAAACTGACAAATACATATGGCCAAGTGATGAAATTCT 723
Query 718 GAAGTCTCATGGGATGAAAATGAGAGAGCCTCGAAATAAAAAACACAGCAGAGAATCTCT 777
||||| |||||||||||| |||| |||||||| || ||||| ||||| |||||||||||
Sbjct 724 CAAGTCGCATGGGATGAAATTGAGGGAGCCTCGTAACAAAAATCACAGTAGAGAATCTCT 783
Query 778 TGCTTTAGCTGTTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGCTTTAGCTGTTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGT 843
Query 838 TCATATTTGGGATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACAGGAACAC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 844 TCATATTTGGGATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACCGGAACAC 903
Query 898 CGTTTCTTGTCTATGTTTCAGATACGGAACTTCAGAAGTCTATTCTGGTTCATTTGATAG 957
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 904 AGTTTCTTGTCTATGTTTCAGATACGGAACTTCAGAACTCTATTCTGGTTCATTTGATAG 963
Query 958 AAATGTGAAGGTGTGGAATGTAGAAGATAAAGCGTTTGTAACTGATAATTTTGGACACCA 1017
|| ||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||
Sbjct 964 AACTGTGAAGGTGTGGAACGTAGAAGATAAAGCATTTATAACTGAAAATCATGGACACCA 1023
Query 1018 GGGTGAAGTTCTAGCCATTGATGTGCTGCGGAAGGAGCGTGCACTTACGGTTGGAAGAGA 1077
||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1024 GGGTGAAATTCTAGCCATTGATGCACTGAGGAAGGAGCGTGCACTTACGGTTGGAAGAGA 1083
Query 1078 TAGAACCATGCTGTATCATAAGGTGCCTGAGA-CTAGCCGTATGGTCTATCGTGCTCCTG 1136
|||||||||||||||||||||||||||||||| | | ||||||| ||||||| |||||||
Sbjct 1084 TAGAACCATGCTGTATCATAAGGTGCCTGAGAGC-ACCCGTATGATCTATCGAGCTCCTG 1142
Query 1137 CATCATCTCTTGAGAGCTGCTGTTTCATCAGTGATAATGAGTACCTGTCTGGTTCGGATA 1196
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CATCGTCTCTTGAGAGCTGCTGTTTCATCAGTGATAATGAGTACCTGTCTGGTTCGGATA 1202
Query 1197 ATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCATTGTCAAGGATG 1256
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1203 ATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCGTTTTCAAGAATG 1262
Query 1257 CTCATCGCGATAAAACTGATGGAATTACCACCAATGGAATCTTAGAAAACGGTGATCATG 1316
| |||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1263 CACATCAAGATATACCTGATGGGATTACCACCAATGGAATCTTAGAAAACGGTGATCATG 1322
Query 1317 AACCAGTCAACAATGACTGTTCTGCAAGTTCTTGGGTCAATTCAGTTGCTACTTGTAGAG 1376
|||||||||||||| ||||||| |||| ||||||||||||| ||||||||||| ||||||
Sbjct 1323 AACCAGTCAACAATAACTGTTCAGCAAATTCTTGGGTCAATGCAGTTGCTACTAGTAGAG 1382
Query 1377 GTAGTGATCTTGCTGCATCTGGAGCTGGTAATGGTTTTGTGCATTTGTGGGCTGTTGAAA 1436
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1383 GCAGTGATCTTGCTGCATCTGGAGCTGGTAATGGTTTTGTGCGTTTGTGGGCTGTTGAAA 1442
Query 1437 CTAATGCCATTCGAAATTTGTACGAGCTTCCACTGACTGGATTTGTCAACTCTTTGGCTT 1496
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 CTAATGCAATTCGACCTTTGTACGAGCTTCCACTGACTGGATTTGTCAACTCTTTGGCTT 1502
Query 1497 TTGCAAAATCGGGTAAATTTCTGATTGCCGGTGTTGGACAGGAAACACGATTTGGAAGAT 1556
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1503 TTGCAAAATCGGGTAAATTTCTGATTGCCGGTGTTGGACAGGAAACTCGATTTGGAAGAT 1562
Query 1557 GGGGCA-GCTTAAAATCTGCTG-AAAATGGCGTCGCAATACACCCCTTAAGGCTGGCATA 1614
|||| | ||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||
Sbjct 1563 GGGG-ATGCTTAAAATCTGC-GCAAAATGGTGTCGCAATACATCCCTTAAGACTGGCATA 1620
Query 1615 AGTATTTCATTGGGATTAAA-GAAGCGTTGTTACTG-ATAATTTTGAGTTGCTAAAATGC 1672
|||||||||||||||| ||| |||||||||||| || ||| |||||||||||||||| ||
Sbjct 1621 AGTATTTCATTGGGAT-AAATGAAGCGTTGTTA-TGGATAGTTTTGAGTTGCTAAAAAGC 1678
Query 1673 CAAAGATAAAATCTT--GTCATATAGGGATTACATGTCTTTGTAGCTCTTGAAGtttttg 1730
||||||| |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1679 CAAAGATCTAATCGCAAGTCATATAGGGATTACATTTCCTTGTAGCTCTTGAAGTTTTTG 1738
Query 1731 ctcccttttttgtttgttctttgtaccatttttttCTTAATACGAGAGATAAGAACTTAA 1790
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1739 CTCCCTTTTTTGTTTGTTCCTTGTACCATTTTTT-CTTAATACGAGAGATAAGAACTTAT 1797
Query 1791 CTTTTTGAGGCTCTGAAGAATCATAGAGGACAGA-AGTTCCCAAATTTT-CATTCTCTCG 1848
| ||||||||||||||||||||| |||||| | | ||||||||| |||| |||||||||
Sbjct 1798 CATTTTGAGGCTCTGAAGAATCAAAGAGGATA-ACAGTTCCCAATTTTTTCATTCTCTCA 1856
Query 1849 GTTAAGCTTTTTGTTTCATTTTTTCCCCCAAATGTTGCAGATAAGTAAATGAAAAGGCAT 1908
|| |||||||||||||| |||| ||| |||||||| ||||||||| |||||||||||
Sbjct 1857 GTAAAGCTTTTTGTTTCGTTTT--CCC--AAATGTTGAAGATAAGTATATGAAAAGGCAA 1912
Query 1909 ATTATT 1914
||||||
Sbjct 1913 ATTATT 1918
> AT4G21130.1 | Symbols: EMB2271 | Transducin/WD40 repeat-like
superfamily protein | chr4:11274296-11276299 FORWARD LENGTH=1465
Length=1465
Score = 457 bits (247), Expect = 2e-127
Identities = 737/967 (76%), Gaps = 59/967 (6%)
Strand=Plus/Plus
Query 322 GGAGGATGAGTTTGCTGATGAGACGGTGGGAGAGAAGAAG-AAGAGATTGACGGAGGATA 380
|||||||||||||||| |||||||||| || ||||| | | |||||| || |||||||||
Sbjct 189 GGAGGATGAGTTTGCTCATGAGACGGTAGGCGAGAA-ACGAAAGAGACTGGCGGAGGATA 247
Query 381 -TGCTGAATAGACT-GAGGGAAGCTAAGCGGAGAGAGCGTG-AGCAAGCGGGtgatgatg 437
| |||||||| | || || || || | |||||||| || || ||| || || |
Sbjct 248 CT-TTGAATAGAATCGA-AGAGGCGAAACAGAGAGAGCATGAAG-AAGATAACGAGGAAG 304
Query 438 atgatga-tgaagacgatgatgaGAGTAT-TAAGAAGATTTTGATGCA-GAAGCAGCAAG 494
||||||| | ||| ||| | | | | | |||| | | ||||| ||| |||| |
Sbjct 305 ATGATGATTTTAGA-GAT--T-CGCTTGTGGCA-AAGACTCTAATGCAGGAA-CAGCTCG 358
Query 495 AGGAGAGTGGTAG-GATTCGAAGAGTTATTGCATCCAGGGTTCAGGAGCCACTA-AGTA- 551
|| |||||||| | | |||| |||| | ||||| |||||||| || | || | ||||
Sbjct 359 AGAAGAGTGGTCGTG-TTCGGAGAGCCAATGCATTGAGGGTTCAAGATCTAC-AGAGTAG 416
Query 552 CTGATGGGTTTAGTGTTATTGTCAAGCACCGACGA-TCTGTTGTATCG-GTAGCTTTATC 609
| ||| |||| ||||||| ||||| |||| || | |||||| | | |||||| ||||
Sbjct 417 C-GATAAGTTTCGTGTTATAGTCAAACACCAAC-ATTCTGTTACA-GGAGTAGCTCTATC 473
Query 610 GGATGATGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTGTTATGCATTGGGATGT 669
||||||||||| ||||| || |||| ||| ||||| |||||| || |||||||||||||
Sbjct 474 AGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGATGT 533
Query 670 ATCTTCTGGTAAAAGTGACAAATACATATGGCCAAGTGATGAAATTCTGAAGTCTCATGG 729
|||||||||||||||||| | |||| ||||||||| |||||| || |||||||||| ||
Sbjct 534 ATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCACGG 593
Query 730 GATGAAAATGAGAG-AGCCTCGAAATAAAAAACACAGCAGAGAATCTCTTGCTTTAGCTG 788
| | ||| | || | || | ||| || ||| | || | ||||||| || |||||||
Sbjct 594 GTT-AAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGCTG 652
Query 789 TTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGTTCATATT-TGG 847
||||||||||||| || ||||| || |||||||||||||| | ||||||||| || |||
Sbjct 653 TTAGCTCTGATGGCCGGTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCAT-TTGTGG 711
Query 848 GATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACAG-GAACACCGTTTCTTG 906
||| | || || ||||||||||||||||| ||| |||||||| | | || |||||| |
Sbjct 712 GATATCCGAACACGAGAGCATGTCCAGGCTTTTACAGGTCACTGTGG-CATTGTTTCTAG 770
Query 907 TCTATG-TTTCAGATACGGAACTTCAGAAGTCTATTCTGGTTCATTTGATAGAA-ATGTG 964
|||||| ||| ||| | |||||| ||||| ||| ||||||||||| |||| ||| || |
Sbjct 771 TCTATGCTTT-AGAGAAGGAACTGCAGAACTCTTTTCTGGTTCATATGATGGAACAT-T- 827
Query 965 AAGG-TGTGGAATGTAGAAGATA-AAGCGTTTGTA-ACTGATAATTTTGGACACCAGGGT 1021
||| | ||||||| |||| ||| || | | | || | | || ||||||||||||| |
Sbjct 828 AAGTATATGGAATGCAGAACATAGAA-CATATATAGAATCATG-TTTTGGACACCAGTCT 885
Query 1022 GAAGTTCTAGCCATTGATG-TGCT-GCGGAAGGAGCGTGCACTTACG-GTTGGAAGAGAT 1078
||| ||||| ||||||||| | || | ||| |||||||| || | | |||||| | |||
Sbjct 886 GAACTTCTATCCATTGATGCT-CTAG-GGAGGGAGCGTGTTCTCA-GTGTTGGACGCGAT 942
Query 1079 AGAACCATGCTGT-ATCATAAGGTGCCTGAGACTAGC-CG-TATGGTCTATCGTGCT-CC 1134
||||| |||| || || ||||||| || ||| ||| | || | || ||||||| ||| ||
Sbjct 943 AGAACAATGCAGTTAT-ATAAGGTTCCCGAGTCTA-CTCGGT-TGATCTATCGAGCTTCC 999
Query 1135 TGCATCATCTCTTGAGAGCTGCTGTTTCATCAGT-GATAATGAGTACCTGTCTGGTTCGG 1193
| |||| | ||||| |||||||||| | | | | | |||||| |||| || || |
Sbjct 1000 -GAATCAAATTTTGAGTGCTGCTGTTTTGTTAATAG-TGATGAGTTTTTGTCCGGATCAG 1057
Query 1194 ATAATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCATTGTCAAGG 1253
||||||||| | |||| |||||| ||| || ||||||||||| ||||| || || ||
Sbjct 1058 ATAATGGAAGTATTGCACTTTGGTCCATTTTGAAAAAGAAACCAGTGTTTATCGTTAACA 1117
Query 1254 ATGCTCA 1260
|||||||
Sbjct 1118 ATGCTCA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94778628960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5