BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490193
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05450.1 | Symbols: ATMFDX1, MFDX1 | mitochondrial ferredoxi... 1483 0.0
> AT4G05450.1 | Symbols: ATMFDX1, MFDX1 | mitochondrial ferredoxin
1 | chr4:2758653-2760912 FORWARD LENGTH=1166
Length=1166
Score = 1483 bits (803), Expect = 0.0
Identities = 975/1057 (92%), Gaps = 16/1057 (2%)
Strand=Plus/Plus
Query 1 AAAAGGTTTAAGATCTTCAAAACATGAAGAACATCTGAGATTCT--GG--G-CTTAAGAC 55
|||||||||||||||||||||||||||||||||| ||||||||| || | ||| | ||
Sbjct 1 AAAAGGTTTAAGATCTTCAAAACATGAAGAACATATGAGATTCTGAGGTTGTCTTTACAC 60
Query 56 AAAGCCGTCTCTTTTAACCTTATTCTTCATCTTCGAGCATACGATTGCTTTCGTCTTCGT 115
||||||||||||||||||||||||||||||| |||| ||||||||| | ||||||| ||
Sbjct 61 AAAGCCGTCTCTTTTAACCTTATTCTTCATCATCGACCATACGATTACAGTCGTCTTAGT 120
Query 116 TTGGGATCTTCGAAAAGTGAATAACttttttttCCCTCGAGTATTCTCTACGATAAATTG 175
|| |||||||| |||||||||||| |||| |||||||| ||||||||| |||||| ||
Sbjct 121 TTATGATCTTCGTAAAGTGAATAAC-TTTTCATCCCTCGATTATTCTCTATGATAAACTG 179
Query 176 CGTTTGATTCTTTCAAtttttttttCATTTGC-GGCCCAAGTTTGGATCTTTTTTGCATC 234
||||| |||||||||| |||||| | |||||||||||||||||||| |||||
Sbjct 180 CGTTTAATTCTTTCAAAAAAAAAATCATTT-CTTGCCCAAGTTTGGATCTTTTTGGCATC 238
Query 235 GTTAATCTCAATTCTCAAGATAGTTAGATTGGTGAGTTAGGAGCTTTGGCGGCAGTGAAC 294
|||||||||||||||||||| || |||| | | | |||| ||||| ||||||||||||
Sbjct 239 GTTAATCTCAATTCTCAAGACAGGTAGA-T--T--GCTAGGTGCTTTAGCGGCAGTGAAC 293
Query 295 GATGCTCGGTCATAGGATCTCAAGATTCGGGTCTACCATTGTTAAACAGCTAGCAAGAGA 354
|||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 294 GATGATCGGTCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAGA 353
Query 355 GGGATATATATCAACATATAGGAGAAGGAATCTACAACGGTCGTATGGCCACTACTTGCC 414
||||||| || ||||||| ||| || ||||||||| ||||| ||||||||||||||||
Sbjct 354 GGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCCACTACTTGCA 413
Query 415 GTCTTTGCCAGTGGTACCAAGGCAAGCTAGGATC-TCGCAGGAAGCCTGGTTTTTGAAGA 473
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 414 GTCTTTGCCAGTGGTACCAAGGCAAGCTAGGA-CTTCTCAGGAAGCCTGGTTTTTGAAGA 472
Query 474 GCCATAAGTTTTGTACTTCTTCAACAACTTCCTCTGAGACTGGTGATGAAGAAACTGAGA 533
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 GCCATAAGTTTTGTACTTCTTCAACAACTTCCTCTGAGAATGGTGATGAAGAAACTGAGA 532
Query 534 AGATAACCATTATCTTTGTTGATAAGGACGGAGAGGAAATTCCTGTTAAAGTACCAATTG 593
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AGATAACCATAATCTTTGTTGATAAGGACGGAGAGGAAATTCCTGTTAAAGTACCAATTG 592
Query 594 GAATGTCCGTGCTCGAAGCTGCTCATGAAAATGATATAGATCTTGAAGGGGCATGTGAGG 653
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 593 GAATGTCAGTGCTCGAAGCTGCTCATGAAAATGATATAGACCTTGAAGGGGCTTGTGAGG 652
Query 654 CTTCTCTAGCGTGTTCAACGTGTCATGTGATTGTGATGGATACGGAATACTATAACAAAC 713
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 CTTCTCTAGCGTGTTCAACGTGTCATGTGATTGTGATGGATACTGAATACTATAACAAAC 712
Query 714 TTGAAGAACCAACTGATGAAGAGAATGATATGCTTGATCTTGCTTTTGGGCTCACAGAAA 773
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTGAAGAACCAACAGATGAAGAGAATGATATGCTTGATCTTGCTTTTGGGCTCACAGAAA 772
Query 774 CGTCACGACTCGGATGCCAAGTCATTGCAAGACCAGAGCTAGATGGTGTGCGCTTGGCTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CGTCACGACTCGGATGCCAAGTCATTGCAAGACCAGAGCTAGATGGTGTGCGCTTGGCTA 832
Query 834 TTCCTTCAGCCACGAGGAATTTCGCGGTTGACGGATTTGTTCCAAAACCTCATTAGTTTT 893
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 TTCCTTCAGCAACAAGGAATTTCGCGGTTGACGGGTTTGTTCCAAAACCTCATTAGTTTC 892
Query 894 CGAAGAGATTCTTCGACCTGAGGCATTAAGGATCAAAGAGCTGATTCATGTTTCTATTGG 953
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 CGCAGAGATTCTTCGACTTGAGGCATTAATGATCAAAGAGCTGATTCATGTTTCTATTGG 952
Query 954 AGTTTTGATGATTGCTTACCGAGAGGAAACAGTTCTTGGACCTGAGGCATTAAAGGATCA 1013
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 953 AGTTTTGATGATTGCTTACCGAGAGGAAACAGTTCTTAGACCTGAGGCATGAAATGATCA 1012
Query 1014 AATAGATGATTTATGTTTCTATTGGAGGATTTGATGA 1050
|| |||||||| ||||||||||||||||| |||||||
Sbjct 1013 AAGAGATGATT-ATGTTTCTATTGGAGGACTTGATGA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5