BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490196
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05440.1 | Symbols: EDA35 | temperature sensing protein-rela... 1057 0.0
AT4G05495.1 | Symbols: | D123 -related protein, pseudogene, te... 427 8e-119
> AT4G05440.1 | Symbols: EDA35 | temperature sensing protein-related
| chr4:2757214-2758275 FORWARD LENGTH=1062
Length=1062
Score = 1057 bits (572), Expect = 0.0
Identities = 643/675 (95%), Gaps = 14/675 (2%)
Strand=Plus/Plus
Query 127 GACGCAATGCCTAACAGAGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GACGCAATGCCTAACAGAGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAA 282
Query 187 GAAGCTTCAGATAAGGAAGGAGAGCCACCATTGAATCGCCCTTCATTTCCAGAACTCGAA 246
|||||||||||| | | || |||||||||||| ||||| |||||||||||||||
Sbjct 283 GAAGCTTCAGAT---G-A--CGA---ACCATTGAATCGTCCTTCTTTTCCAGAACTCGAA 333
Query 247 ATCGAGATCAGAGAATCAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 ATCGAGATCAGAGAATCAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGG 393
Query 307 AGTGCACCAAAAGACGCAGCTTGGATCAGTCCATCGCAGAATCTAAGCTGCACTTGTTTC 366
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 394 AGTTCACCAAAAGACGCAGCTTGGATTAGTCCATCACAGAATCTAAGCTGCACTTGTTTC 453
Query 367 AATGAGATTGCTCTCTTGTTTCGTTCCTCAGATTCGTTAATCCATGATCTCTGCAATGCT 426
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 454 AATGAGATTGCTCTCTTGTTTCGTTCCTCTGATTCGTTAACCCATGATCTCTTCAATGCT 513
Query 427 TATGATTCATGTACTGACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCTTTGAGA 486
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 514 TATGATTCATGTAGTGACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCGTTGAGA 573
Query 487 AAATGGTACCCTTCTTTGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAC 546
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 AAATGGTACCCTTCGTTGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAG 633
Query 547 CTTGTTGGGATTTGTCAGCGTGAGGTAACAACATTTTACCCTGTTCTTCTCAATGAGAAG 606
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 CTTGTTGGGATTTGTCAGCGTGAGGTAACTACATTTTACCCTGTTCTTCTCAATGAGAAG 693
Query 607 GATTTGATCAAAGGGTT-GATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGA 665
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GATTTGCTCAA-GGGTTTGATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGA 752
Query 666 ATCACAGAATTACACTTTTGATGTTTATGTGACGAAAGAGAGAA-AGGTTAAGCTGATAG 724
|||| ||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 753 ATCAGAGAATTACACTTTTGATGTTTATGTGACGAAAGAGAGAAGAG-TTAAGCTAATAG 811
Query 725 ATTTCAATACTTGGTGTGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGG 784
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ATTTCAATACTTGGTGTGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGA 871
Query 785 AGAT-CATGGAGAAT 798
|||| ||||||||||
Sbjct 872 AGATTCATGGAGAAT 886
Score = 233 bits (126), Expect = 2e-60
Identities = 139/145 (96%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 802 CGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGAGT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGAGT 978
Query 862 TCTGGTAGTGGTTGGGCTCAGGTTCTTAAGATAGCGGAAGAGGAGTTTCAGAAAGA-GAA 920
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 979 GCTGGTAGTGGTTGGGCTCAGGTTCTTAAGATAGTGGAAGAGGAGTTTCAGAAAGACGA- 1037
Query 921 TCAGAGTTCGGTTGAAGTTGCTTGA 945
||||||||| | |||||||||||||
Sbjct 1038 TCAGAGTTCTGATGAAGTTGCTTGA 1062
Score = 219 bits (118), Expect = 5e-56
Identities = 124/127 (98%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGAAGAAGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAAATTCAAATCC 60
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 ATGAAGGAAGACGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAGATTCAAATCC 120
Query 61 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAGTCATTCATCAACTATCTCATCGAC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGAC 180
Query 121 GATTCTG 127
|||||||
Sbjct 181 GATTCTG 187
> AT4G05495.1 | Symbols: | D123 -related protein, pseudogene,
temporary automated functional assignment; blastp match of 40%
identity and 1.5e-14 P-value to GP|28829467|gb|AAO52005.1||AC116988
similar to Homo sapiens (Human). HT-1080 protein
(D123 gene product) (Hypothetical protein) {Dictyostelium discoideum}
| chr4:2776689-2777150 REVERSE LENGTH=462
Length=462
Score = 427 bits (231), Expect = 8e-119
Identities = 268/286 (94%), Gaps = 1/286 (0%)
Strand=Plus/Plus
Query 514 ATGGAATTTAGATGCTTTGTGAAATCTAACGACCTTGTTGGGATTTGTCAGCGTGAGGTA 573
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGAATTTAGATGCTTTGTGAAATCTAACGAGCTTGTTGGGATTTGCCAGCGTGAGGTA 60
Query 574 ACAACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGATCAAAGGGTTGATAGAAGAG 633
|| |||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||
Sbjct 61 ACTACATTTTACCCTGTTCTTCTCAATGAGAAGGAGTTGCTCAAGGGGTTGGTAGAAGAG 120
Query 634 TTCTTTGATGATAAGATTAGGTTTGAATTTGAATCACAGAATTACACTTTTGATGTTTAT 693
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 121 TTCTTTGATGATAAGATTAGGTTTGAATTTGAATCAGAGAGTTACACTTTTGATGTTTAA 180
Query 694 GTGACGAAAGAGAGAAAGGTTAAGCTGATAGATTTCAATACTTGGTGTGGTTCTACTTTG 753
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 GTGACGAAGGAGAGAAGGGTTAAGCTAATAGAAATCAATACTTGGTGTGGTTCTACTTTG 240
Query 754 CCATTGATGTATACATGGGAAGAACTTGAGGAGAT-CATGGAGAAT 798
|||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 241 CCATTGATGTATACATGGAAAGAACTTGAGAAGATTCATGGAGAAT 286
Score = 220 bits (119), Expect = 1e-56
Identities = 137/145 (94%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 802 CGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGA-G 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 319 CGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGATG 378
Query 861 TTCTGGTAGTGGTTGGGCT-CAGGTTCTTAAGATAGCGGAAGAGGAGTTTCAGAAAGAGA 919
| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 379 TCCTGGTAGTGGTTGG-CTTCAGGTTCTTAAGATAGCGGAAGAAGAGTTTCAGAAAGAGG 437
Query 920 ATCAGAGTTCGGTTGAAGTTGCTTG 944
|||||||||| | ||||||||||||
Sbjct 438 ATCAGAGTTCTGATGAAGTTGCTTG 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5