BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490198
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:2... 944 0.0
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2... 265 5e-70
> AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:2777903-2778801
REVERSE LENGTH=741
Length=741
Score = 944 bits (511), Expect = 0.0
Identities = 659/729 (90%), Gaps = 15/729 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCGTCGTCTTCTTCCCCTTTGCCTCCGGCGATGAAAAACGGAGAGTCTAGAAAC 60
|||||||||||||||||||||||||| |||| ||| ||||| |||||||||| |||||||
Sbjct 1 ATGTCTTCGTCGTCTTCTTCCCCTTTCCCTCAGGCTATGAAGAACGGAGAGTATAGAAAC 60
Query 61 TGGACAGAGCTACCGCCGGAACTGACGTCATCGATCCTGCACCGTCTCGGTGCGATTGAG 120
||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 61 TGGGCGGAGCTACCGCCGGAACTGACGTCATCGATCCTGCTCCGACTCGGTGCGATTGAG 120
Query 121 ATACTTCTAAACGCTCAGAGAGTATGCAGATCGTGGCGACGCATCTGTAAAGACCCATCG 180
||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||
Sbjct 121 ATACTTCAAAACGCTCAGAGAGTGTGCAAATCGTGGCGACGCGTCTGTCAAGACCCATCG 180
Query 181 ATGTGGCGTAAAATCGACATAAAAATC-CCG-AAA------AAATTC-GAAGACTTGTTT 231
|||||||||||||||||||| | |||| | ||| ||| || | ||| ||||||
Sbjct 181 ATGTGGCGTAAAATCGACATCAGAATCAAGGAAAACTTGGTAAACTCGGTAGAATTGTTT 240
Query 232 CACGATCTCGAGGCCGTGTGCCGTCGCGCCGTTGATCTCAGTAAGGGAGGCTTGATTGAG 291
||| | ||||| || ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct 241 TACGTTATCGAGCCCCTGTGCTGTCGCGCCGTTGATCTCAGCCAGGGAGGCTTGCTTGAG 300
Query 292 ATCAACATTGAGCACTTGGTGAACACTTC-TCTCCTCAATTACATCGCCGACAGATCAAG 350
||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 301 ATCAACATTGATTACTTGGTGAACACTTCGT-TCCTCAATTACATTGCCGACAGATCAAG 359
Query 351 TAATCTGATACGGCTTGGAGTTGTTGACTGTGGTCCAGTAGTT-AGCAGTGGAGTTGTCG 409
|||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 360 TAATCTGAGACGGCTTGGAGTTGTTGACTGTGCTCCAGTA-TTGAGCAGGGGAGTTGTCG 418
Query 410 AAGCAGTC-ATGAAGCTCCTATTACTTGAAGAAATTGAGATTACATACAAGTCATCAATG 468
|||||| | |||||||||| ||| ||||||||| |||| ||||||||||||||||||||
Sbjct 419 AAGCAG-CGATGAAGCTCCCATTGCTTGAAGAACTTGATATTACATACAAGTCATCAATC 477
Query 469 AGAGAACAAGATTTGAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACGTTAAAGCTA 528
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 AGAGAACAAGAGTTAAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACATTAAAGCTA 537
Query 529 AACTGTATGGGTGATTTTAAGTGTTGTGATAAGGTTGCTCTAGCAATTGCTGAAACAATG 588
||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 AACTGTACGGGTGATGTTAAGTGTTGTGATAAGGTTGCTCTAGCAATCGCTGAAACAATG 597
Query 589 CCCGGTCTTCGCCACCTCCAGCTTTTCAGGAACGGATTATCGGACACGGGCTTGAACGCC 648
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 598 CCCGGTCTTCGCCACCTCCAGCTTTTCAGGAACGGATTATCCGAGACGGGCTTGAACGCC 657
Query 649 ATTCTTGAAGGTTGTCCTCACCTGGAAAACCTCGATTTACACAAGTGTTTAAACATTAAC 708
|||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 658 ATTCTTGAAGGTTGTCCTCACCTGAAAAACCTCGGGTTACACCAGTGTTTAAACATTAAC 717
Query 709 CTTGTTGGT 717
|||| |||
Sbjct 718 ATTGTAGGT 726
> AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2760881-2762445
REVERSE LENGTH=1179
Length=1179
Score = 265 bits (143), Expect = 5e-70
Identities = 529/708 (75%), Gaps = 55/708 (8%)
Strand=Plus/Plus
Query 32 CGGCGATGAAAAACGGAGAGTCTAGAAACTGGACAGAGCTACCGCCGGAACTGACGTCAT 91
|||||||| | |||||| |||| ||||||||| ||||| || ||||||||||| |||
Sbjct 71 CGGCGATGGAGGTCGGAGAATCTACAAACTGGACGGAGCTTCCACCGGAACTGACTTCAG 130
Query 92 CGATCCTGCACCGTCTCGGTGCGATTGAGATACTTCTAAACGCTCAGAGAGTATGCAGAT 151
| |||||||||||||| || ||||||||||||||| ||||||||||| ||| |||||||
Sbjct 131 CAATCCTGCACCGTCTTGGCGCGATTGAGATACTTGAAAACGCTCAGAAAGTTTGCAGAT 190
Query 152 CGTGGCGACGCATCTGTAAAGACCCATCGATGTGGCGTAAAATCGACATAAA-AATCC-C 209
| ||||| || | ||||||||||||||||||||||||||||| ||||| | || || |
Sbjct 191 CTTGGCGTCGTGTTTGTAAAGACCCATCGATGTGGCGTAAAATTGACATGCATAA-CCTC 249
Query 210 GAAAAAATTCGAAGACTTGT-TTCACGATCTCGAGGCCGTGTGCCGTCGCGCCGTTGATC 268
| | | || || ||| || || || | |||||| | ||||||||| ||| |||||||
Sbjct 250 GGAGAT-TTGGACGACATGGATT-ACAACCTCGAGATCATGTGCCGTCACGCTGTTGATC 307
Query 269 -TCAGTAAGGGAGGCTTGATTGAGATCAACATT-GAGCACTT-GGTGAACACTTC-TCTC 324
| || ||||||||||| |||| ||| ||| | | |||| ||| | | || ||||
Sbjct 308 GT-AGCCAGGGAGGCTTGGTTGATATCGGTATTTG-GTACTTTGGT-A-CTGTTGATCTC 363
Query 325 CTCAATTACATCGCCGACAGATCAAGTAATCTGATACGGCTTGGAGTTGTTGACTGTGGT 384
||||||||||||||| | || || |||||||||| | | ||| || || | | ||| |
Sbjct 364 CTCAATTACATCGCCCATAGGTCGAGTAATCTGAGAAGCCTTAGACTTATA-AG-GTGTT 421
Query 385 C-CAGTAGTTA--G-C-AGTGGAGTTGTCGAAGCAGTCATGAAGCT-CCTATTACTTGAA 438
| || | ||| | | | |||| ||||||||||||| |||| || || | ||||||
Sbjct 422 CTCAA-A-TTACAGACGA-TGGATTTGTCGAAGCAGTTGTGAAACTTCC-A---CTTGAA 474
Query 439 GAAATTGAGAT-TACATACAAGTCATCAATGAGAGAACAAGAT-T-TGAAAGTTGTAGGC 495
||| | ||| | | ||||| | | ||| | || | | | | | | | ||||||||||
Sbjct 475 GAACTCGAGTTGT-CATACT-G-C-TCATTTTCAGTAGA-G-TCTCTCAGAGTTGTAGGC 528
Query 496 CAGTCTTGTCCAAATCTGAGGACGTTAAAGCTAAACT-GTATGGGTGATTTTAAGT-GTT 553
|||| |||| |||| ||| ||| || ||||| ||| | || | | ||| |
Sbjct 529 CAGTGTTGTTTAAATATGAAGACTTTGAAGCTGAACAAGCATCC-TCAA---AAGGAGAA 584
Query 554 GTGATAAGGTTGCTCTAGCAATTGCTGAAACAATGCCCGGT-CTTCGCCACCTCCAGCTT 612
||| | | |||||||||||| |||||||||||||| | |||||||| |||||||||
Sbjct 585 -TGACGATGATGCTCTAGCAATCGCTGAAACAATGCC-GAAACTTCGCCATCTCCAGCTT 642
Query 613 T-TCAGGAACGGATTATCGGACACGGGCTTGAACGCCATTCTTGA-AGGTTGTCCTCA-- 668
| | ||||||| || || ||||| || || ||||| |||||||| | ||| | |||
Sbjct 643 TGTG-GGAACGGGTTGTCAGACACCGGTTTAAACGCTATTCTTGACAA-TTG-C-TCAAA 698
Query 669 CCTGGAAAACCTCGATTTACACAAGTGTTTAAACATTAACCTTGTTGG 716
||||||| | || ||||||| | |||||| || |||||||||||||
Sbjct 699 CCTGGAACATCTTGATTTACGCCGGTGTTTCAATGTTAACCTTGTTGG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5