BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490201

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03600.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   859    0.0  


> AT4G03600.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G03730.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:1603702-1604508 REVERSE LENGTH=807
Length=807

 Score =  859 bits (465),  Expect = 0.0
 Identities = 566/611 (93%), Gaps = 21/611 (3%)
 Strand=Plus/Plus

Query  22   AATGGCAGATCACACAGAATCTCCAAGATCGTATCTTATCTTCATCAAAATCATGAGTAA  81
            |||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  200  AATGGCAGATCAAACAGAATCTCCAAGATCGTATCATATCTTCATCACAATCATGAGTAA  259

Query  82   AAGACGGACATGGGTTTGTCTCTTCATCGCCGTCTACGCAATTCTCTTATCTTCTTCATG  141
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  260  AAGACGGACATGGGTTTGTCTCTTCATCGCTGTCTACGCAATTCTCGTATCTTCTTCATG  319

Query  142  GAACCTCCTGAGATCAGTTCTTAACTGGTACAAGCTCCAATACACATCATCATCTTCAGA  201
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||
Sbjct  320  GAACCTCCTGAGATCAGTTCTTAACTGGTACAAGCTTCAATACACGTCATCAAATTCAGA  379

Query  202  TTCTTCTCCGTCTCCATCACCGTCTCGATTGCCGGCGGTATACGCGTCGGTGGTGCTCGG  261
            || |||||| | | ||  |       |||| |||||||||||||||||||||||||||||
Sbjct  380  TTATTCTCC-T-T-CA--A-------GATTACCGGCGGTATACGCGTCGGTGGTGCTCGG  427

Query  262  TGCGATGTTTGGAGCTATGTCGATGGTGGCTGCTACGACGGTGGCGGTTCCGGCGGTGAT  321
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  428  TGCGATGTTTGGAGCTATGTCGATGGTGGCTGCTATGACGGTGGCGGTTCCGGCGGTGAT  487

Query  322  GGTGATTTGGATATCGGTGGTGGTGTTACTTGCCTTCTTTGGGAAATCAAGAAGAGTTTT  381
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  488  GGTGATTTGGATATCGGTGGTGGTGTTGCTTGCCTTCTTTGGGAAATCAAGAAGAGTTTT  547

Query  382  AGTGGTTGAAGGAAGGAAGATTACGAGAGAAGTTGTTGGATTTGTGTTTAAGGTTCTATT  441
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  548  AGTGGTTGAAGGAAGGAAGATTACGAGAGAAGTTGTCGGATTTGTGTTTAAGGTTCTTTT  607

Query  442  -AAAGGAAGGCAATGCTGTTGCTGTTTTTTGTGCTGTTTTAGCTTATTTTCTGCTTATTA  500
             |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  608  GAAAG-AAGGCAATGTTGTTGCTGCTTTTTGTGCTGTTTTAGCTTATTTTCTGCTTATTA  666

Query  501  GAAGAGATTTGGATTCAAATTAGGGTTCTTGATTATTAGATTATTTAGGGAATTTTGATC  560
            |||||||||| || ||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct  667  GAAGAGATTTTGACTCATATTAAGGTTCTTGATTTTTAGATTATTTAGGGAATTTTGATC  726

Query  561  TACTTTTGATTATCTTGAGTCATTCCCGAATGTAAATGTAAAGTTAATTTAGAAAA-CTA  619
            ||     ||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct  727  TA-----GATTATCTTGAGTCACTCCCGAATGTAAATGTAAAGTTAATTTAGAAAATC-A  780

Query  620  ATTGTTAATAG  630
            ||||||| |||
Sbjct  781  ATTGTTAGTAG  791



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30441893082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5