BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490202
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16530.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase... 1701 0.0
AT1G72590.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase... 941 0.0
> AT2G16530.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein | chr2:7162989-7165323 REVERSE LENGTH=1427
Length=1427
Score = 1701 bits (921), Expect = 0.0
Identities = 1089/1169 (93%), Gaps = 16/1169 (1%)
Strand=Plus/Plus
Query 2 TGGAATTAGAGATTGTGTGGTTGGTTAGAGCCGCTTGGATCACCGTTTGGATCGTCTCGA 61
||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 113 TGGAATTGGAGATTGTGTGGTTGGTTAGAGGCGCTTGGATCACTGTTTGGATCGTCTCTA 172
Query 62 TACTTCCTTTGGTGATTGCTTCGATACCCAGTTCAAAGCTTAACTCTTTTCGTGAACTCG 121
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 173 TACTTCCTTTGGTGATTGCTTCGATACCCACTTCAAAGCTCAACTCTTTTCGTGAACTCG 232
Query 122 TTTTGAGTTTCGCTGGGAGAGGCAAGATTCTTCACCCGTCGTCTCAGAAGTTTACAATTC 181
|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 233 TTTTGAGTTTCGCTGGTAGAGGCAAGATTCTTCACCCTTCTTCTCAGAAGTTTACAATTC 292
Query 182 CTCAGAAATGCTTTGCTCACTTTTATGTTATTGGAGTGGTGTGGACGACTCTCCTGCTTG 241
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 293 CTCAGAAATGCTTTGCACACTTTTATGTTATTGGAGTGGTGTGGACAACTCTCCTGCTTG 352
Query 242 CTGCAACTTGGATGTATGCTTGCAAAATGGCGCCTTTATCTTATGAGGAGTTCCAGTTAT 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 353 CTGCAACTTGGATGTATGCTTGCAAAATGGCGCCTTTATCTTCTGAGGAGTTCCAGTTAT 412
Query 302 CAGACATTGCAAGCCGTTTAGCCGGAGGTTCCCATGTTTTCTCCTTTTATAAATCTCATA 361
| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 413 CCGACATTGCAAGCCGTTTAGCCGGAGGTTCAGATGTTTTCTCCGTTCATAAATCTAATA 472
Query 362 TGACTCCTGTTGAGCATCGGTTTAAAGTGTGGCGAGCGGTGTTTCTTCTTCTTCTGATGG 421
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 473 TGACTCCTGTCGAGCATCGGTTTAAAGTGTGGCGAGCGGTGTTTCTACTTCTTCTGATGG 532
Query 422 AAATCCATGTCTTGAGACGGCTTATAGAGTCATTTTATGTATTCAAATATAGCCCTTCCG 481
| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 533 AGATCCATGTCTTGAGACGGCTTATAGAGTCATTCTATGTTTTCAAATATAGCCCTTCTG 592
Query 482 CTCGGATGCACATTCTCGGTTATTTCGCAGGATCGTTTTTCTATGTTACAGCGCCTTTGT 541
||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct 593 CTCGGATGCACATTCTCGGTTATTTCGCAGGATTGTTTTTCTATGTAACAGCTCCTTTGT 652
Query 542 CACTCTGCTCCAATATTGCTCCAGAGGTAGCAAGATTCGCCGGAAATCATGTGGCTGAGT 601
|||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 653 CACTCTGCTCCAATATAGCTCCAGAGGTAGCAGGATTCGTAGGAAATCAAGTGGCTGAGT 712
Query 602 TCATTGCTAATGGGAAAAGCCATACTTCAGCACCTGAATTTAATTTGTTATTATCTATAA 661
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 713 TCATTGCTAATGGGAAAAGCCATACTTCAGCACCTGAATTTAACTTGTTATCATCTATAA 772
Query 662 GTCCTTTGATGAAGCTTGGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTCTGGGGAT 721
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 773 GTCCTTTGATGAAGCTTGGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTTTGGGGAT 832
Query 722 GGATACATCAACGCCGCTGTCATGCCATTCTTGGATCGCTCCGGGAAAATCCGAGTCAAG 781
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 833 GGATACATCAGCGCCGCTGTCACGCCATTCTTGGATCGCTCCGGGAAAATCCGAGCCAAG 892
Query 782 CGAAAGAGTACATAATTCCGTATGGAGATTGGTTTGGGATGGTCTCTTGTCCGCATTTCC 841
||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 893 CGAAAGAGTACATTATTCCGTATGGAGATTGGTTTGGGATGGTGTCTTCTCCACATTTCT 952
Query 842 TGGCAGAAATCGTTTTGTATGCGGGTTTACTGATTGCGAGTGGAGGAACAGATATAACCA 901
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TGGCAGAAATTGTTTTGTATGCGGGTTTACTGATTGCGAGTGGAGGAACAGATATAACCA 1012
Query 902 TCTGGTTACTCTTTGGTTTCGTGGCTGCTAATCTGACATACGCCGCTGGAGAAACGCACC 961
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1013 TCTGGTTACTCTTTGGTTTTGTGGCTGCTAATCTGACATACGCGGCTGGAGAAACGCACC 1072
Query 962 GTTGGTATCTCCGGAAGTTTGAGAATTATCCGGCTAATCGCCATGCCATTTTCCCTTATC 1021
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1073 GTTGGTATCTCCGGAAGTTTGAGAATTATCCGGCTAATCGGCATGCCATTTTCCCTTATG 1132
Query 1022 TCTACTAAATGGTTAAGAGAT----T------CT---GTAAATGCTGGATTCTGAAGATC 1068
||||||||||||||||||||| | || |||||||||| |||||||| |||
Sbjct 1133 TCTACTAAATGGTTAAGAGATACAATGGTTGTCTTCTGTAAATGCTGAATTCTGAACATC 1192
Query 1069 AAAGATTTGTGGTGCCTTGTTGTGTTGTAATT-AGCCACGCTTCTTAATTCTCATCAT-T 1126
|||||||||||||| ||||| |||| ||||| ||| | |||||| | |||||||| | |
Sbjct 1193 GAAGATTTGTGGTGCTTTGTTATGTTTTAATTTAGCTATGCTTCTCAGTTCTCATCTTCT 1252
Query 1127 ATAAAACTGTTACTTTTTTCATTTCAAGA 1155
|| | ||| | |||||||| ||||||||
Sbjct 1253 TTATA-CTGGTGCTTTTTTCGTTTCAAGA 1280
> AT1G72590.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein | chr1:27335601-27337072 FORWARD LENGTH=1046
Length=1046
Score = 941 bits (509), Expect = 0.0
Identities = 656/723 (91%), Gaps = 25/723 (3%)
Strand=Plus/Plus
Query 322 GCCGGAGGTTCCCATGTTTTCTCCTTTTATAAATCTCATATGACTCCTGTTGAGCATCGG 381
|||||||||||||| ||||||| | | | || |||||||||| |||||||||||||
Sbjct 271 GCCGGAGGTTCCCACGTTTTCT-C---T-T---TC-CATATGACTCATGTTGAGCATCGG 321
Query 382 TTTAAAGTGTGGCGAGCGGTGTTTCTTCTTCTTCTGATGGAAATCCATGTCTTGAGACG- 440
||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 322 TTTAAAGTGGGGCGAGCGGTGTTTCTACTTCTTCTGATGGAGATCCATGTCTTGAGACGT 381
Query 441 GCTTATAGAGTCATTTTATGTATTCAAATATAGCCCTTCCGCTCGGATGCACATTCTCGG 500
| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 382 G-TTATAGAGTCATTCTATGTATTCAAATATAGCACTTCCGCTCGGATGCACATTCTCGC 440
Query 501 TTAT-TTCGCAGGATCGTTTTTCTATGTTA-CAGCGCCTTTGTCACTCTGCTCCAATATT 558
|||| || || | || ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 441 TTATGTTGGC-GCATTGTTTTACTATG-TAGCAGCGCCTTTGTCACTCTGCTCCAATATT 498
Query 559 GCTCCAGAGGTAGCAAGATTCGCCGGAAATCATGTGGCTGAGTTCATTGCTAATGGGAAA 618
|||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||
Sbjct 499 GCTCCAGAGGTAGCAAGATTCGTAGGAAGTCAAGTGGCTGAGTTCATTGCTAGTGGGAAA 558
Query 619 AGCCATACTTCAGCACCTGAATTTAATTTGTTATTATCTATAAGTCCTTTGATGAAGCTT 678
||||||| | || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 559 AGCCATA-GT---CA--TGATTTTAATTTGTTATTATCTATAAGTCCTTTGATGAAGCTT 612
Query 679 GGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTCTGGGGATGGATACATCAACGCCGC 738
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 613 GGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTTTGGGGATGGATACATCAACGTCGC 672
Query 739 TGTCATGCCATTCTTGGATCGCTCCGGGAAAATCCGAGTCAAGCGAAAGAGTACATAATT 798
||||| |||||||||||||| ||||||||| |||| |||||||| |||||||||||||||
Sbjct 673 TGTCACGCCATTCTTGGATCACTCCGGGAATATCCTAGTCAAGCAAAAGAGTACATAATT 732
Query 799 CCGTATGGAGATTGGTTTGGGATGGTCTCTTGTCCGCATTTCCTGGCAGAAATCGTTTTG 858
|| |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 733 CCATATGGAGATTGGTTTGAGATGGTCTCATGTCCGCATTTCCTAGCAGAAATCGTTTTA 792
Query 859 TATGCG-GGTTTACTGAT-TGCGAGTGGAGGAACAGATATAACCATCTGGTTACTCTTTG 916
||| | |||||||| || | ||||||||||||||||||||| |||||||||||||||||
Sbjct 793 TAT-CTAGGTTTACTTATAT-CGAGTGGAGGAACAGATATAAGCATCTGGTTACTCTTTG 850
Query 917 GTTTCGTGGCTGCTAATCTGACATACGCCGCTGGAGAAACGCACCGTTGGTATCTCCGGA 976
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 851 GTTTCGTGGCTGCTAATCTGACATACGCAGCTGGAGAAACGCACCGTTGGTATCTCCAAA 910
Query 977 AGTTTGAGAATTATCCGGCTAATCGCCATGCCATTTTCCCTTATCTCTACTAAATGGTTA 1036
||||||||||||||||||||| ||| ||||| ||||||||| || |||||||||||||||
Sbjct 911 AGTTTGAGAATTATCCGGCTAGTCGGCATGCTATTTTCCCTCATGTCTACTAAATGGTTA 970
Query 1037 AGA 1039
|||
Sbjct 971 AGA 973
Score = 409 bits (221), Expect = 4e-113
Identities = 255/272 (94%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 1 ATGGAATTAGAGATTGTGTGGTTGGTTAGAGCCGCTTGGATCACCGTTTGGATCGTCTCG 60
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTAGAGATTGTGTGGTTGGTTAAAGCCGCTTGGATCACCGTTTGGATCGTCTCT 60
Query 61 ATACTTCCTTTGGTGATTGCTTCGATACCCAGTTCAAAGCTTAACTCTTTTCGTGAACTC 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 ATACTTCCTTTGGTGATTGCTTCAATACCTAGTTCAAAGCTTAACTCTTTTCGTGAACTC 120
Query 121 GTTTTGAGTTTCGCTGGGAGAGGCAAGATTCTTCACCCGTCGTCTCAGAAGTTTACAATT 180
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||
Sbjct 121 GTTTTGAGTTTCGCTGGTAGAGGCAAGATTCTTCACCCATCCTCTCAGAAGTTTACAGTT 180
Query 181 CCTCAGAAATGCTTTGCTCACTTTTATGTTATTGGAGTGGTGTGGACGACTCTCCTGCTT 240
|||||||| | ||||| |||||| |||||| | |||||||||||||| ||||||||||||
Sbjct 181 CCTCAGAAGTTCTTTGGTCACTTCTATGTTGTCGGAGTGGTGTGGACAACTCTCCTGCTT 240
Query 241 GCTGCAACTTGGATGTATGCTTGCAAAATGGC 272
||||||||||||||||||||||||||||||||
Sbjct 241 GCTGCAACTTGGATGTATGCTTGCAAAATGGC 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5