BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490205

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G03565.1 | Symbols:  | Cystatin/monellin superfamily protein...   837    0.0  


> AT4G03565.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr4:1586747-1587734 FORWARD LENGTH=792
Length=792

 Score =  837 bits (453),  Expect = 0.0
 Identities = 528/565 (93%), Gaps = 2/565 (0%)
 Strand=Plus/Plus

Query  223  gataaggaaagCGACGGAGAGGACGATGTAGATAGCATAGTGGACGACGGAGATTCAACA  282
            |||| |||||| || ||||| ||| ||| |||||| ||||||||||| ||| ||||||||
Sbjct  229  GATACGGAAAGAGAGGGAGAAGACAATGGAGATAGTATAGTGGACGATGGATATTCAACA  288

Query  283  AGCGATCAACCAGAATGGGGAGTGGATGACTTCGATGATATATATAGCGATTTCTATTCA  342
            | |||||||||||| |||| ||||||| ||||||||||| ||||||||||||||| ||||
Sbjct  289  AACGATCAACCAGAGTGGGAAGTGGATAACTTCGATGATTTATATAGCGATTTCTGTTCA  348

Query  343  CCTGATGAAGACTGTTATACCGACGAAGAAGATGAGCGTAAAAAACGTCTTTATCGTCGA  402
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  349  CCTGATGAAGACTGTTATACCGACGAAGAAGATGAGCGTAAAAGACGTCTTTATCGTCGA  408

Query  403  AATCTCCACTTTAGCCATGGTTTTCTGGTGGAAAAAGGAATTCGTCCACGTTCAGTATGG  462
            |||||||||||||| | ||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct  409  AATCTCCACTTTAGTCGTGGTTTTCTGGTGGAAAAAGGGATTCATCCACGTTCCGTATGG  468

Query  463  AGTGGCGCAATCTTACTTGAACC-TCTGGACAGTGAACATTCTCCGGTTAAAGGAAGGAC  521
            | ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  469  ATTGGTGCAATCTTACTTGAACCAT-TGGACAGTGAACATTCTCCGGTTAAAGGAAGGAC  527

Query  522  ACAGCTTCAATATGCACAAGACATGGCCAAATTGTGTCTTTGCAAATACAATGCCTTAAA  581
            ||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  528  ACAACTTCAATACGCACAAGACATGGTCAAATTGTGTCTTCGCAAATACAATGCCTTAAA  587

Query  582  CGAAACCAATGTGACATTGGATCATGTTGTAAGAGTGACAGGGTCTTTCACTGGTAGTTG  641
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  588  GGAAACCAATGTGACATTGGATCATGTTGTAAGAGTGACAGGGTCTTTCACTGGTAGGTG  647

Query  642  GGTTTCGTATATCACTTTCATGGCGAAAGAGTCTGAGGATGATGATACGCTTGTGGAGTA  701
            |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  648  GGTTTCGTATATTACTTTTATGGCGAAAGAGTCTGAGGACGATGATACGCTTGTGGAGTA  707

Query  702  TCAAGCCAAGGTTGTGAAGAAATTAAAATGTAAGACTTATCCTATGTTTTGCAGGCCTAG  761
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  708  TCAAGCCAAGGTTGTGAAGAAATTACAATGTAAGACTTATCCTATGTTTTGCAGGCCTAG  767

Query  762  TCCCAAGCTAGATCCAGATATGTAG  786
            ||| ||||||||||||||| |||||
Sbjct  768  TCCTAAGCTAGATCCAGATTTGTAG  792



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38228185867


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5