BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490216
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03520.1 | Symbols: ATHM2 | Thioredoxin superfamily protein ... 1116 0.0
AT1G03680.1 | Symbols: ATHM1, TRX-M1, ATM1, THM1 | thioredoxin ... 368 5e-101
> AT4G03520.1 | Symbols: ATHM2 | Thioredoxin superfamily protein
| chr4:1562359-1564192 REVERSE LENGTH=924
Length=924
Score = 1116 bits (604), Expect = 0.0
Identities = 795/880 (90%), Gaps = 41/880 (5%)
Strand=Plus/Plus
Query 1 TAGTTTCGTTATCTTTTTA-ATT-TC--TCTATCTGGATATTA-TTTTACACTTGGGGAT 55
||||||||||||||||||| || || ||||||||||||||| |||| |||||||||||
Sbjct 45 TAGTTTCGTTATCTTTTTATTTTCTCTATCTATCTGGATATTATTTTTTCACTTGGGGAT 104
Query 56 TAGGAGAATCTCTCTCGTC-CTCTATCTATAGAGCCATGGCTGCTTTCACTTGTACCTCT 114
| |||||| | ||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 105 TTGGAGAAAC-CTCTCCTCTCTCTATCTAT--AGCCATGGCTGCTTTCACTTGTACCTCT 161
Query 115 CGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATCGCATCC--A-CACCATCGGCTTCT 171
|||||||||||||||||||| || ||||||| ||||| |||| | ||||||||||||||
Sbjct 162 CGTCCTCCGATTTCTCTCCGCTCCGAGACCAGAATCGTATCCTCATCACCATCGGCTTCT 221
Query 172 TCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGAATCATCAGGTTTGAGAATCCGT 231
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 222 TCTCTCTCTTCTCGGCGGATGTTCGCCGTCTTACCGGAATCATCAGGTTTGAGAATCCGT 281
Query 232 CTTTCTCTTTCTCCGGCTTCGTTGACCTCGATTCATCATCATCCTAGGGTTTCTCGATTG 291
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 282 CTTTCTCTCTCTCCGGCTTCGTTGACCTCGATTCATCA--A-CCTAGGGTTTCTCGATTA 338
Query 292 CGAAGAGCTGTCGTCTGTGAAGCCCAGGAAACTACTACCGATATTCCAGTGGTCAATGAC 351
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 339 CGAAGAGCCGTCGTCTGTGAAGCTCAGGAAACTACTACCGATATTCAAGTGGTCAATGAC 398
Query 352 TCAACATGGGACTCTCTAGTTCTTAAGGCAGA-TGGGCCTGTA-TTGGTCGACTTTTGGG 409
|| ||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||||||
Sbjct 399 TCGACATGGGACTCTCTAGTTCTTAAAGCA-ACTGGGCCTGTAGTTG-TCGACTTTTGGG 456
Query 410 CACCATGGTGTGGACCTTGCAAGATGATTGACCCTCTCGTGAATGATCTAGCACAACAAT 469
||||||||||||||||||||||||||||||| || || || || ||||||||||| || |
Sbjct 457 CACCATGGTGTGGACCTTGCAAGATGATTGATCCGCTTGTAAACGATCTAGCACAGCATT 516
Query 470 ACACCGGGAAGATCAAGTTCTACAAACTAAACACCGATGAATCTCCTTCA-AC-CCCAAG 527
|||| ||||||||||||||||||||| ||||||| |||||||||||| | || ||| |
Sbjct 517 ACACTGGGAAGATCAAGTTCTACAAATTAAACACTGATGAATCTCCTA-ATACTCCCG-G 574
Query 528 CCAGTATGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCAATGGCGAGAAGAAGGA 587
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 575 CCAGTACGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCGGTGGCGAGAAGAAGGA 634
Query 588 TACAATCATAGGTGCAGTGCCAAAAACCACACTCACATCTAGCATTGACAAGTTCTTGCA 647
||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 635 TACAATCATAGGTGCAGTGCCCAAAACCACACTCACATCTAGCCTCGACAAGTTCTTGCC 694
Query 648 ATGAAATTTCACT-GTG-AGTCTGTAAGATCTC-TATCAT-TCTATCTCTCGCTCTTGTT 703
||||||| ||||| ||| ||||||||||||||| |||| | ||| ||||||| |||||||
Sbjct 695 ATGAAATATCACTTGTGGAGTCTGTAAGATCTCGTATC-TCTCTGTCTCTCGTTCTTGTT 753
Query 704 CTCATTATCTCTGTAACTCAGCTATCACTGAACATCTAGACCTGGATAAATAATATGATG 763
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 754 CTCATTATCTCTGTAACTCAT-TATCACTGAACATCTAGACCTGGATAAATAATATGATG 812
Query 764 TCATGTCTT----C-T-------GGTTTGAAGATGTTTTGAGATGCGGAACTAAAGAAAT 811
||||||||| | | ||||||||||||||||||||||||||||||||| ||
Sbjct 813 TCATGTCTTATGTCATTTTTACTGGTTTGAAGATGTTTTGAGATGCGGAACTAAAGGTAT 872
Query 812 CAAAGATCAATCTTGGACTAGACTAATGGAACCGCATTAA 851
|||||| |||||||||||||||||||||||||| ||||||
Sbjct 873 CAAAGAACAATCTTGGACTAGACTAATGGAACCACATTAA 912
> AT1G03680.1 | Symbols: ATHM1, TRX-M1, ATM1, THM1 | thioredoxin
M-type 1 | chr1:916819-918064 REVERSE LENGTH=910
Length=910
Score = 368 bits (199), Expect = 5e-101
Identities = 457/575 (79%), Gaps = 44/575 (8%)
Strand=Plus/Plus
Query 91 ATGGCTGCTTTCACTTGTACCTCTCGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATC 150
|||||||||| ||| ||||| || ||||| ||||||||| |||| || |||| | ||||
Sbjct 200 ATGGCTGCTTACACGTGTACTTCCCGTCCGCCGATTTCTATCCGGTCAGAGATGAGAATC 259
Query 151 GCATCCACACC-ATCGGCTTCTTCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGA 209
|| ||| | || | ||| ||| || ||||| |||| | ||||||| | ||||| |||||
Sbjct 260 GCTTCCTCGCCGA-CGGGTTC--CT-TCTCTACTCGACAGATGTTCTCTGTGTTGCCGGA 315
Query 210 ATC-ATCAGGTTTGA-GAATCCGTC-TTTCTCTTTCTCCGGCTTCGTTGAC-CTCGATTC 265
||| | | || |||| || | || | |||||| | | |||| || |||||
Sbjct 316 ATCGAGC-GGATTGAGGACT-CG-CGTTTCTC--TAT----CTTC----ACTCTCGA--- 359
Query 266 ATCATCATCCTAGGGTTTCTCGATTGCGAAGA-GCTGTCGTCTGTGAAGCCCAGGAAACT 324
| | || |||||||||| ||||| ||| || || || |||||||||| ||||| |||
Sbjct 360 A-GA--ATTCTAGGGTTTCCCGATTACGACGAGGC-GTTATCTGTGAAGCTCAGGACACT 415
Query 325 ACTAC-CGATATTCCAGTGGTCAATGACTCAACATGGGACTCTCTAGTTCTTAAGGCAGA 383
|||| || |||||||||||||| || ||||||||||||||||||||||| ||||| ||
Sbjct 416 GCTACAGGA-ATTCCAGTGGTCAACGATTCAACATGGGACTCTCTAGTTCTCAAGGCTGA 474
Query 384 TGGGCCTGTATTGGTCGACTTTTGGGCACCATGGTGTGGACCTTGCAAGATGATTGA-CC 442
|| |||||| || ||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 475 TGAGCCTGTGTTTGTCGACTTTTGGGCACCATGGTGTGGACCCTGCAAAATGATTGATCC 534
Query 443 C-TCTCGTGAATGATCTAGCACAACAA-TACACCGGGAAGATCAAGTTCTACAAACTAAA 500
| | | || || || || || ||| || ||| |||| || |||||||||||||||| ||
Sbjct 535 CAT-T-GTCAACGAACTCGCGCAA-AAGTACGCCGGCCAGTTCAAGTTCTACAAACTTAA 591
Query 501 CACCGATGAATCTCCTTCAACCCCAAGCCAGTATGGAGTTAGAAGCATCCCAACGATCAT 560
||| ||||| |||||| ||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 592 CACTGATGAGTCTCCTGCAACCCCTGGCCAGTATGGTGTTAGAAGCATCCCAACTATCAT 651
Query 561 GATCTTTGTCAATGGCGAGAAGAAGGATACAATCATAGGTGCAGTGC-CAAAA-ACCACA 618
||||||||||||||| |||||||||||||||||||| ||||| || | | ||| || ||
Sbjct 652 GATCTTTGTCAATGGTGAGAAGAAGGATACAATCATCGGTGCTGT-CTCTAAAGAC-ACT 709
Query 619 CTCA-CATCTAGCATTGACAAGTTCTTGCAATGAA 652
| | || | ||||| |||| |||||| ||||||
Sbjct 710 TT-AGCAACCAGCATCAACAAATTCTTGTAATGAA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5