BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490221
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03415.1 | Symbols: | Protein phosphatase 2C family protein... 2316 0.0
AT1G03590.1 | Symbols: | Protein phosphatase 2C family protein... 1026 0.0
> AT4G03415.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:1503708-1506500 REVERSE LENGTH=1732
Length=1732
Score = 2316 bits (1254), Expect = 0.0
Identities = 1358/1409 (96%), Gaps = 4/1409 (0%)
Strand=Plus/Plus
Query 1 ATGGGGGGTTGTGTATCGACTAGTAGTAAGAGTACATGCAGCAGTTGGAGCAATGGAGAG 60
|||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 245 ATGGGGGGTTGTGTGTCGACTAGTAGTAAGAGTACGTGTAGCAGCTGGAGCAATGGAGAG 304
Query 61 AAGCCTGTGCGTAGGCCATATCTCGGGATTGGTTGTTGTGTGAGCAAAAGGGCGAAGAGA 120
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 AAGCCTGTGCGTCGACCATATCTCGGGATTGGTTGTTGTGTGAGCAAAAGGGCGAAGAGA 364
Query 121 ACGTTTTCAGACCACATTGTCTCGTTGCAGAGCTTGACTTCTATACCAAATCGGATCACC 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 365 ACGTTTTCAGACCACATTGTCTCGTTGCAGAACTTGACTTCTATACCAAATCGGATCACC 424
Query 181 A-CTAGCAGCAAGAGCAGGAGCTCTTGTATTTTCACTCAACAAGGACGCAAGGGTATTAA 239
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 425 AGC-AGCAGCAAGAGCAGGAGCTCTTGCATTTTCACTCAACAAGGACGCAAGGGTATTAA 483
Query 240 TCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTGAAGATGTGACCTTTTGTGGTGT 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 484 TCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTGAAGATGTGACATTTTGTGGTGT 543
Query 300 ATTTGATGGTCATGGTCCTTATGGTCATCTTGTTGCTCGTAAAGTGAGAGATACATTGCC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 ATTTGATGGTCATGGTCCTTATGGCCATCTTGTTGCTCGTAAAGTGAGAGATACATTGCC 603
Query 360 TGTGAAGTTGCAGTCTTTCTTTCATACGCTTCAGTCAAAGCAAAACGGTTCGAAAGGAAC 419
||||||||| |||| ||||||||| ||||||||||| ||||||||| |||| ||||||||
Sbjct 604 TGTGAAGTTACAGTTTTTCTTTCAGACGCTTCAGTCGAAGCAAAACTGTTCTAAAGGAAC 663
Query 420 TCGATTCAGAAGAAATTCAAGCAAATCGGCTGTCCAAGAAGCCGTTAAAGAAGGATCTGA 479
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 664 TCGATTCAGAAGAAATTCAAGCAAATCAGCTGTCCAAGAAGCTGTTAAAGAAGGATCTGA 723
Query 480 CGAGGATAAACTAAAAGGCTTGTGGGGAGAAGCTTTCTTGAAATCTTTTAAAGCCATGGA 539
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 724 CGAGGATAAACTTAAAGGCTTATGGGGAGAAGCTTTCTTGAAATCTTTTAAAGCCATGGA 783
Query 540 TAAGGAACTACGATCTCATCCTAATCTGGACTGTTTCTGTAGTGGCAGTACTGGCGTAAC 599
||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 784 TAAGGAACTGCGGTCTCATCCTAATCTGGACTGTTTTTGTAGTGGCAGCACTGGCGTAAC 843
Query 600 AATTCTTAAACAGGGGTCTAATCTCTTCATGGGAAACATTGGGGATTCTCGGGCCATCCT 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 844 AATTCTTAAACAGGGGTCTAATCTCTTCATGGGAAACATCGGGGATTCTCGGGCCATCCT 903
Query 660 TGGATCAAAAGATAGTAACGATTCTATGGTGGCAACTCAACTAACAGTTGATCTGAAGCC 719
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 904 TGGATCAAAAGACAGTAACGATTCTATGGTGGCAACTCAACTGACAGTTGATCTGAAGCC 963
Query 720 GGATTTACCGAGGGAAGCTGAGAGGATCAAACGGTGTAAAGGTCGAGTATTTGC-ATTGG 778
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 964 GGATTTACCTAGGGAAGCTGAGAGGATCAAACGGTGTAAAGGTCGAGTATTTGCGA-TGG 1022
Query 779 AAGACGAGCCAGAGGTGCCGCGAGTTTGGTTACCTTATGATGATGCACCTGGATTGGCCA 838
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 1023 AAGACGAGCCAGAGGTGCCGCGAGTCTGGCTACCTTATGATGATGCACCTGGATTAGCCA 1082
Query 839 TGGCTAGGGCGTTTGGTGACTTCTGTCTAAAAGATTATGGAGTCATTTCAGTACCTGAGT 898
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1083 TGGCCAGGGCGTTTGGTGACTTCTGTCTAAAAGAGTATGGAGTCATTTCAGTACCTGAGT 1142
Query 899 TCACTCACCGTGTTCTTACAGACAAAGATCAATTCATTGTTCTTGCCTCGGACGGAGTAT 958
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1143 TCACTCACCGTGTTCTTACAGACAGAGATCAATTCATTGTTCTTGCCTCTGACGGAGTAT 1202
Query 959 GGGATGTGTTAAGCAATGAAGAAGTGGTTGACATTATAGCTTCAGCTACAAGCCGAGCAT 1018
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1203 GGGATGTGTTAAGCAACGAAGAAGTGGTTGACATTGTAGCTTCAGCTACAAGCCGGGCAT 1262
Query 1019 CAGCGGCTAGGACCTTGGTGAACTCGGCTGCGCGTGAATGGAAACTGAAGTACCCGACTT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CAGCGGCTAGGACCTTGGTGAACTCGGCTGCGCGTGAATGGAAACTGAAGTACCCGACTT 1322
Query 1079 CCAAAATGGATGATTGTGCAGTGGTATGTTTGTTTCTGGATGGGAAAATGGATTCTGAGT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CCAAAATGGATGATTGTGCAGTGGTATGTTTGTTTCTGGATGGGAAAATGGATTCTGAGT 1382
Query 1139 CGGATTATGATGAACAGGGCTTCTCTTCAGCAACAAATGCTGTAGAATCAGATGACGGCC 1198
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1383 CGGATTATGATGAACAAGGCTTCTCTTCAGCCACAAATGCTGTAGAATCAGATGATGGCC 1442
Query 1199 AAAGATCAGAACCATGTCTCCAAAGAAACTTCACAGTTAGATCATCCTCAGATCAAGAAA 1258
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1443 AAAGATCAGAACCATGTCTCCAAAGAAACTTCACAGTTAGATCATCATCAGATCAAGAAA 1502
Query 1259 ACGAGACTTACGGTAATGTGAATACAGAGACTGATGCAGAGGATGAGAAAACGGTAGGAG 1318
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ACGAGACTTATGGTAACGTGAATACAGAGACTGATGCAGAGGATGAGAAAACGGTAGGAG 1562
Query 1319 ATCAAAACTGGTTGGGTCTAGAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGA 1378
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1563 ATCAAAACTGGTTGGGTCTACAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGA 1622
Query 1379 GATTCTCTGAAGAGAAGTCCAAGACTTGA 1407
|||||||||||||||| || |||||||||
Sbjct 1623 GATTCTCTGAAGAGAAATCGAAGACTTGA 1651
> AT1G03590.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:894254-897518 REVERSE LENGTH=2003
Length=2003
Score = 1026 bits (555), Expect = 0.0
Identities = 1127/1396 (81%), Gaps = 68/1396 (5%)
Strand=Plus/Plus
Query 46 TGGAGCAATGGAGAGAAGCCTGTGCGTAGGCCATATCTCGGGATTGGTTGTTGTGTGAGC 105
||||||||| || || ||||| ||| | | |||| ||| ||||| || ||||||| ||||
Sbjct 416 TGGAGCAAT-GA-AG-AGCCTATGCATCGCCCATGTCTTGGGATGGGATGTTGTGGGAGC 472
Query 106 AAAA-GGGCGAAGAGAACG-TTTTCAGACCACATTGTCTC-GTTGCAGAGCTTGACTTCT 162
|||| ||| |||||| | | |||||||||| ||| || || || || | |||| ||||
Sbjct 473 AAAATGGG-GAAGAG-AGGTTTTTCAGACCGCATGGTTTCACTT-CATAACTTGGTTTCT 529
Query 163 ATACCAAATCGGATCACCACTAGCAGCAAGAGCAGGAGCTCTTGTATTTTCACTCAACAA 222
||||| |||||||||| | | ||||||||||| ||||| ||||||||||||||
Sbjct 530 ATACCGAATCGGATCATTGGGAATGGAAAGAGCAGGAGTTCTTGCATTTTCACTCAACAG 589
Query 223 GGACGCAAGGGTATTAATCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTG-AAGA 281
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 590 GGACGCAAGGGTATTAATCAGGACGCAATGATTGTGTGGGAAGATTTTATGTC-GAAAGA 648
Query 282 TGTGACCTTTTGTGGTGTATTTGATGGTCATGGTCCTTATGGTCATCTTGTTGCTCGTAA 341
||| |||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 649 TGTTACCTTTTGCGGTGTGTTTGATGGACATGGTCCTCATGGTCATCTTGTTGCTCGTAA 708
Query 342 AGTGAGAGATACATTGCCTGTGAAGTTGCAGTCTTTCTTTCATACGC-TTCAGTCAAAGC 400
|||||||||| |||||||||| ||||||| ||| || | || | | || |||| ||||
Sbjct 709 AGTGAGAGATTCATTGCCTGTAAAGTTGCTGTCCCTCCTGAATTC-CATTAAGTCGAAGC 767
Query 401 AAAACGGTTCGAAAGGAACTCGATTCAGAAGAAATTCAAGCAAATCGGCT-GTCCAAGAA 459
|||| || | | ||||||||| | | |||||||||| | | | || ||||
Sbjct 768 AAAATGGACCCATAGGAACTCG-T---G--------CAAGCAAATCCGATAG-CCTAGAA 814
Query 460 GCCGTTAAAGAAGGATCT---GACGAGGATAAACTAAAAGGCTTGTGGGGAG-AAGCTTT 515
|| | ||||||| |||| || ||||||||| | || ||| |||| || |||||||
Sbjct 815 GCTGAGAAAGAAGAATCTACTGAGGAGGATAAATTGAATTTCTTATGGG-AGGAAGCTTT 873
Query 516 CTTGAAATCTTTTAAAGCCATGGATAAGGAACTACGATCTCATCCTAATCTGGACTGTTT 575
||||||||| || || || |||||||||||||| ||||| ||||||||||| || || ||
Sbjct 874 CTTGAAATCATTCAATGCTATGGATAAGGAACTGCGATCCCATCCTAATCTAGAATGCTT 933
Query 576 CTGTAGTGGCAGTACTGGC-GTAACAATTC-TTAAACAGGGGTCTAATCTCTTCATGGGA 633
||| |||||| | || | | || ||||| | |||| ||||| || ||||| | ||||||
Sbjct 934 CTGCAGTGGCTGCACAG-CTGTTACAAT-CATTAAGCAGGGATCAAATCTATACATGGGT 991
Query 634 AACATTGGGGATTCTCGGGCCATCCTTGGATCAAAAGATAGTAACGATTCTATGGTGGCA 693
|||||||||||||||||||| || |||||||| ||||| || || ||||| ||| | |||
Sbjct 992 AACATTGGGGATTCTCGGGCGATACTTGGATCTAAAGACAGCAATGATTCGATGATTGCA 1051
Query 694 ACTCAACTAACAGTTGATCTGAAG-CCGGATTTACCGAGGGAAGCTGAGAGGATCAAACG 752
||| |||||||| || || || || || || || ||||||||||||||||||||||
Sbjct 1052 GTTCAGCTAACAGTAGA-CTTAAAACCTGACTTGCCAAGGGAAGCTGAGAGGATCAAACA 1110
Query 753 GTGTAAAGGTCGAGTATTTGCATTGGAAGACGAGCCAGAGGTGCCGCGAGTTTGGTTACC 812
|||||||||| | || |||||| || ||||||||||||||||| | ||||||||| ||||
Sbjct 1111 GTGTAAAGGTAGGGTCTTTGCACTGCAAGACGAGCCAGAGGTGTCACGAGTTTGGCTACC 1170
Query 813 -TTATGATGATGCACCTGGATTGGCCATGGCTAGGGCGTTT-GGTGACTTCTGTCTAAAA 870
|| |||| |||| |||||||| ||||||||||| || ||| ||||| |||||||| |||
Sbjct 1171 ATT-TGATAATGCTCCTGGATTAGCCATGGCTAGAGC-TTTCGGTGATTTCTGTCTGAAA 1228
Query 871 GATTATGGAGTCATTTC-AGTACCTGAGTTCACTCACCGTGTTCTTACAGACAAAGATCA 929
|| |||||||| ||||| | |||| |||||| ||||||||||||||||||| | ||||||
Sbjct 1229 GACTATGGAGTGATTTCGA-TACCAGAGTTCTCTCACCGTGTTCTTACAGATAGAGATCA 1287
Query 930 ATTCATTGTTCTTG-CCTCGGACGGAGTATGGGATGTGTTAAGCAATGAAGAAGTGGTTG 988
|||||||| |||| |||| || ||||| ||||||||| ||||||| |||||||| ||||
Sbjct 1288 GTTCATTGT-CTTGGCCTCAGATGGAGTCTGGGATGTGCTAAGCAACGAAGAAGTAGTTG 1346
Query 989 ACA-TTATAGCTTCAGCTACAAGCCGAGCATCAGCGGCTAGGAC-CTTGGTGAACTCGGC 1046
| | || |||| |||||||||||||| |||||||| |||||| | | ||||| | || ||
Sbjct 1347 A-AGTTGTAGCATCAGCTACAAGCCGGGCATCAGCAGCTAGG-CTCGTGGTGGATTCAGC 1404
Query 1047 TGCGCGTGAATGGAAACTGAAGTACCCGACTTCCAAAATGGATGATTGTGCAGTGGTATG 1106
|| || ||||||||||| |||||||||||||| || ||||||||||||||||| || ||
Sbjct 1405 TGTACGCGAATGGAAACTTAAGTACCCGACTTCGAAGATGGATGATTGTGCAGTTGTGTG 1464
Query 1107 TTTGTTTCTGGATGGGAAAATGGATTCTGAG---TCGGATTATGATGAACAGGGCTTCTC 1163
||||||||| || || | |||||| || ||| || ||| | || ||||| |||||||
Sbjct 1465 TTTGTTTCTCGACGGCAGAATGGACTCAGAGACATCAGATAACGAAGAACAATGCTTCTC 1524
Query 1164 TTCAGCAACAAATGCTGTAGAATCAGATGACGGCCAAAGATCAGAACCATGTCTCCAAAG 1223
||| |||||||| || ||||||||||| || |||| || ||||||| ||||| || ||
Sbjct 1525 TTCGGCAACAAACGCAGTAGAATCAGACGAAAGCCAGGGAGCAGAACCGTGTCTTCAGAG 1584
Query 1224 AAACT-TCACAGTTAGATCATCCTCA--G-ATCAAGAAAACGAGACTTACGGTAATGTGA 1279
||| | ||||||| ||||||| ||| | ||||||||||| | | ||| ||||| ||||
Sbjct 1585 AAA-TGTCACAGTCAGATCATTATCAACGGATCAAGAAAACAACAGTTATGGTAAAGTGA 1643
Query 1280 ATACAGAGACTGAT---GCAGAGGATGAGAAAACG-GT-A-GGAGATCAAAACTGGTTGG 1333
| ||||| ||||| |||||| | ||||||||| | | ||||| || ||||||| ||
Sbjct 1644 TTGCAGAGGCTGATAATGCAGAGAAGGAGAAAACGAGGGAAGGAGAACAGAACTGGTCGG 1703
Query 1334 GTCTAGAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGAGATTCTCTGAAGAG- 1392
| |||||||| || || || |||||||| ||||| || |||||||||||| ||| ||||
Sbjct 1704 GACTAGAAGGTGTTACTCGAGTGAACTCTCTTGTTCAACTTCCGAGATTCCCTGGAGAGG 1763
Query 1393 AAGTCCAA-GACTTGA 1407
|| |||| |||||||
Sbjct 1764 AA--CCAAAGACTTGA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5