BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490222
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03410.2 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 2087 0.0
AT4G03405.1 | Symbols: | pre-tRNA | chr4:1501607-1501678 FORWA... 122 8e-27
AT5G22315.1 | Symbols: | pre-tRNA | chr5:7387888-7387959 FORWA... 117 4e-25
AT3G61825.1 | Symbols: | pre-tRNA | chr3:22881807-22881878 FOR... 117 4e-25
AT1G03570.1 | Symbols: | pre-tRNA | chr1:892514-892585 FORWARD... 117 4e-25
AT4G00985.1 | Symbols: | pre-tRNA | chr4:424717-424788 REVERSE... 111 2e-23
AT4G27875.1 | Symbols: | pre-tRNA | chr4:13882917-13882988 REV... 111 2e-23
AT2G21700.1 | Symbols: | pre-tRNA | chr2:9270663-9270734 REVER... 111 2e-23
AT2G16240.1 | Symbols: | pre-tRNA | chr2:7039094-7039165 FORWA... 111 2e-23
> AT4G03410.2 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr4:1501168-1503561 FORWARD LENGTH=1883
Length=1883
Score = 2087 bits (1130), Expect = 0.0
Identities = 1414/1545 (92%), Gaps = 43/1545 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaTCAGGAAAG-CTCCAATATTTTTCTAATTTCACCATAACCTAATCCTATCAA 59
|||||||||||| |||| | ||||| |||||||||||| | || ||||||||||||||||
Sbjct 172 AAAAAAAATCAGAAAAGAC-CCAATTTTTTTCTAATTTGATCACAACCTAATCCTATCAA 230
Query 60 CATCGTTAACCAAACAAAGCCAATACATCTACCACGGAGATGTATCACTCAAGCTCGTAT 119
|||||||||||||||||||||||||||| ||||| || | || | | | |||||
Sbjct 231 CATCGTTAACCAAACAAAGCCAATACATTTACCA---AG--G-AT-A-T--A---CGTAT 277
Query 120 GCATATTGCGAAGATCACCCGATTTCATGAATTTCAGaaaaaa--aaaaG-Ct--tt-tt 173
||||||||| ||||||||||||||| ||||||||||||||||| | || || |
Sbjct 278 GCATATTGCAAAGATCACCCGATTTTATGAATTTCAGAAAAAACCTTCCGCCTGATTCTC 337
Query 174 ttGAATCGATTTGATCAGACTGCCGTATCGGCGGAGACCACGATGGTGTAGTCCTTCAAC 233
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 338 TTGAATCGTTTTGATCAGACTGCCGTATCGGCGGAGACCACGATGGTGTAGTCCTTGAAC 397
Query 234 GTGCCTAGGTCTTAAACTAGAACGGCAGGACTCGAAGCAACTGGTCCTATGGTCTAGTGG 293
|| |||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 398 ATGTCTAGATCTTAAACCAAAACGGTAGGACTCGAAGCAACTGGTCCTATGGTCTAGTGG 457
Query 294 TCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTCGGTAGAACCttttttt 353
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 458 TCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTAGGACCTTTGTTT 517
Query 354 tCGGCTTCAGTTACGAGAATGTGCTTTCCTGGTTTTTAACCAAATCACAACCCATCGGTT 413
|||||||| ||| |||| ||||| || ||||||||||||||| | |||||| |||||
Sbjct 518 TCGGCTTCGGTTTTGAGATTGTGCAAACC-GGTTTTTAACCAAATTAAAACCCACCGGTT 576
Query 414 ATCGGGTTTAAACTAACCGAAAGTCGGTTCAGCTCAGTTCCTACTGTTTGTTTGGTCACC 473
|| || ||||| ||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 577 ATTGGTTTTAATTTAACCGAAACTCGGTTCGGCTCAGTTCCTAC----CGTTTGGTCACC 632
Query 474 AAAGTCTGCTTCTTCCTCTTTGTTCTTCAAAGTCTAAAAACTTCACCTTTGGCGGTGAGA 533
|||||||||| |||| | ||||||| || |||||||||||| || |||||||| ||||||
Sbjct 633 AAAGTCTGCTGCTTCTTTTTTGTTC-TCTAAGTCTAAAAACCTCTCCTTTGGCTGTGAGA 691
Query 534 GAGCCAACGAGAAGAGAAAAAGTATCTTCCTTTGAGAAGTGCAAAGTCCATGGCAGCTCT 593
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 692 GAGCCAACGAGAAGAGAAAAAGTATCTTCCTTTGAGAAGTGC-AAGTCCATGGCAGCTCT 750
Query 594 C---TGTTGTCCTACCACCATCATCGTCTCCGGGAAGCTTTCTTCACGGATTAAAACCGC 650
| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 751 CTGTTGTTGTCCCACCACCATCATCGTCTCCGGGAAGGTTTCTTCACGGATTAAAACCGC 810
Query 651 AGGTCAATTACCCAGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAG 710
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AGGCCCATTACCCCGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAG 870
Query 711 GAACTTGATCGTGAAATCGATCATTGAAGACAGAGAAGCAATCGATTTTAAAAATGACAA 770
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 871 AAACTTGATCGTTAAATCGATCATTGAAGACAGAGAAGCAATCGATGTTAAAAATGACAA 930
Query 771 TTTCAAGCCAGAGGAAG-A--A-C-------AAA-CAGAAGATACAGATCGGCTGATGAG 818
||||||| ||||||||| | | | ||| ||||||||||||||||||||||||
Sbjct 931 TTTCAAGGCAGAGGAAGAACTATCAGAAGATAAAGTAGAAGATACAGATCGGCTGATGAG 990
Query 819 TCGAGGAATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTCTT 878
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 991 TCGAGGTATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTTTT 1050
Query 879 AACCATCGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACC 938
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 AACCATTGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACC 1110
Query 939 TGAACACAATTGGGTTGCGTATGAACAAATTCTCAAAACAAACCCAGTTTTGGCGAAAAT 998
|||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1111 TGAACATAATTGGTTTGCGTATGAACAAATTCTCAAAACAAACCCTGTTTTGGCGAAAAT 1170
Query 999 GGCCATCAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTTTGAAGGAAA 1058
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1171 GGCGATTAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTACGAAGGAAA 1230
Query 1059 ACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACCCT 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1231 ACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACACT 1290
Query 1119 CCATGGTTCACTCTCTCACTATTACTACCAATTCTGCGAGGCTCTCTTTCCTTTTCAAGA 1178
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1291 CCATGGTTCACTGTCTCACTATTACTACCAATTCTGTGAGGCTCTCTTTCCTTTTCAAGA 1350
Query 1179 ATGGTGGGTAGTTCCTGCAAAAGTCGCCTTTGATCAAACCGTATGGTCTGCAATTTGGAA 1238
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1351 ATGGTGGGTAGTCCCTGCAAAAGTCGCATTTGATCAAACCGTATGGTCTGCAATTTGGAA 1410
Query 1239 CAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 CAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAG 1470
Query 1299 CGAAATCCAGACGACATTTTGGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTAGC 1358
||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1471 CGAAATCAAGACAACATTTTTGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTGGC 1530
Query 1359 TCACTTGGTTACATACGGTGTAATTCCTGTAGACCAAAGGCTTCTCTGGGTGGATTGCAT 1418
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 1531 ACACTTGGTTACATACGGTGTAATCCCTGTAGACCAAAGGCTTCTTTGGGTAGATTGTAT 1590
Query 1419 TGAACTCATATGGGTCACTATATTGTCGACTTACTCAAACGAAAAAGCTGAGGCGCAAGC 1478
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1591 TGAACTCATATGGGTCACTATATTATCAACTTACTCGAACGAAAAAGCTGAGGCGCAAGC 1650
Query 1479 ATCAGGGGAAACAAACTCCAGTTCTCACTCAGGCGAGGTTTGCCA 1523
||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1651 ATCAGAGGAAACGAACTCCAGTTCTCACTCAAGCGAGGTTTGCCA 1695
Score = 132 bits (71), Expect = 1e-29
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1563 TTGTGCCTGCAAATACTTGACAGGATTAGGCGATATCAGCATGTAGATTCAAGATTCTGT 1622
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 1780 TTGTGCCTGCAAATACTTGACAGGATTAGGTGATATCAGCATGTAGATTCTAGATTCTAT 1839
Query 1623 AGACTGTAGCTGGAGGTGGATGAAGAACA 1651
||||| || | ||||||||||||||||||
Sbjct 1840 AGACTCTAACAGGAGGTGGATGAAGAACA 1868
> AT4G03405.1 | Symbols: | pre-tRNA | chr4:1501607-1501678 FORWARD
LENGTH=72
Length=72
Score = 122 bits (66), Expect = 8e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATC 60
Query 336 TCGGTAGAACCt 347
||||||| ||||
Sbjct 61 TCGGTAGGACCT 72
> AT5G22315.1 | Symbols: | pre-tRNA | chr5:7387888-7387959 FORWARD
LENGTH=72
Length=72
Score = 117 bits (63), Expect = 4e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTCCCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 60
Query 336 TCGGTAGAACCt 347
||||| | ||||
Sbjct 61 TCGGTGGGACCT 72
> AT3G61825.1 | Symbols: | pre-tRNA | chr3:22881807-22881878 FORWARD
LENGTH=72
Length=72
Score = 117 bits (63), Expect = 4e-25
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 278 TCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTC 337
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCC-ATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTC 62
Query 338 GGTAGAACCt 347
||| ||||||
Sbjct 63 GGTGGAACCT 72
> AT1G03570.1 | Symbols: | pre-tRNA | chr1:892514-892585 FORWARD
LENGTH=72
Length=72
Score = 117 bits (63), Expect = 4e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTCCCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 60
Query 336 TCGGTAGAACCt 347
||||| | ||||
Sbjct 61 TCGGTGGGACCT 72
> AT4G00985.1 | Symbols: | pre-tRNA | chr4:424717-424788 REVERSE
LENGTH=72
Length=72
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60
Query 336 TCGGTAGAACCt 347
||||||||||||
Sbjct 61 TCGGTAGAACCT 72
> AT4G27875.1 | Symbols: | pre-tRNA | chr4:13882917-13882988 REVERSE
LENGTH=72
Length=72
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60
Query 336 TCGGTAGAACCt 347
||||||||||||
Sbjct 61 TCGGTAGAACCT 72
> AT2G21700.1 | Symbols: | pre-tRNA | chr2:9270663-9270734 REVERSE
LENGTH=72
Length=72
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60
Query 336 TCGGTAGAACCt 347
||||||||||||
Sbjct 61 TCGGTAGAACCT 72
> AT2G16240.1 | Symbols: | pre-tRNA | chr2:7039094-7039165 FORWARD
LENGTH=72
Length=72
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60
Query 336 TCGGTAGAACCt 347
||||||||||||
Sbjct 61 TCGGTAGAACCT 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81575885625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5