BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490222 Length=1651 Score E Sequences producing significant alignments: (Bits) Value AT4G03410.2 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 2087 0.0 AT4G03405.1 | Symbols: | pre-tRNA | chr4:1501607-1501678 FORWA... 122 8e-27 AT5G22315.1 | Symbols: | pre-tRNA | chr5:7387888-7387959 FORWA... 117 4e-25 AT3G61825.1 | Symbols: | pre-tRNA | chr3:22881807-22881878 FOR... 117 4e-25 AT1G03570.1 | Symbols: | pre-tRNA | chr1:892514-892585 FORWARD... 117 4e-25 AT4G00985.1 | Symbols: | pre-tRNA | chr4:424717-424788 REVERSE... 111 2e-23 AT4G27875.1 | Symbols: | pre-tRNA | chr4:13882917-13882988 REV... 111 2e-23 AT2G21700.1 | Symbols: | pre-tRNA | chr2:9270663-9270734 REVER... 111 2e-23 AT2G16240.1 | Symbols: | pre-tRNA | chr2:7039094-7039165 FORWA... 111 2e-23 > AT4G03410.2 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:1501168-1503561 FORWARD LENGTH=1883 Length=1883 Score = 2087 bits (1130), Expect = 0.0 Identities = 1414/1545 (92%), Gaps = 43/1545 (3%) Strand=Plus/Plus Query 1 aaaaaaaaTCAGGAAAG-CTCCAATATTTTTCTAATTTCACCATAACCTAATCCTATCAA 59 |||||||||||| |||| | ||||| |||||||||||| | || |||||||||||||||| Sbjct 172 AAAAAAAATCAGAAAAGAC-CCAATTTTTTTCTAATTTGATCACAACCTAATCCTATCAA 230 Query 60 CATCGTTAACCAAACAAAGCCAATACATCTACCACGGAGATGTATCACTCAAGCTCGTAT 119 |||||||||||||||||||||||||||| ||||| || | || | | | ||||| Sbjct 231 CATCGTTAACCAAACAAAGCCAATACATTTACCA---AG--G-AT-A-T--A---CGTAT 277 Query 120 GCATATTGCGAAGATCACCCGATTTCATGAATTTCAGaaaaaa--aaaaG-Ct--tt-tt 173 ||||||||| ||||||||||||||| ||||||||||||||||| | || || | Sbjct 278 GCATATTGCAAAGATCACCCGATTTTATGAATTTCAGAAAAAACCTTCCGCCTGATTCTC 337 Query 174 ttGAATCGATTTGATCAGACTGCCGTATCGGCGGAGACCACGATGGTGTAGTCCTTCAAC 233 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 338 TTGAATCGTTTTGATCAGACTGCCGTATCGGCGGAGACCACGATGGTGTAGTCCTTGAAC 397 Query 234 GTGCCTAGGTCTTAAACTAGAACGGCAGGACTCGAAGCAACTGGTCCTATGGTCTAGTGG 293 || |||| |||||||| | ||||| |||||||||||||||||||||||||||||||||| Sbjct 398 ATGTCTAGATCTTAAACCAAAACGGTAGGACTCGAAGCAACTGGTCCTATGGTCTAGTGG 457 Query 294 TCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTCGGTAGAACCttttttt 353 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| Sbjct 458 TCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTAGGACCTTTGTTT 517 Query 354 tCGGCTTCAGTTACGAGAATGTGCTTTCCTGGTTTTTAACCAAATCACAACCCATCGGTT 413 |||||||| ||| |||| ||||| || ||||||||||||||| | |||||| ||||| Sbjct 518 TCGGCTTCGGTTTTGAGATTGTGCAAACC-GGTTTTTAACCAAATTAAAACCCACCGGTT 576 Query 414 ATCGGGTTTAAACTAACCGAAAGTCGGTTCAGCTCAGTTCCTACTGTTTGTTTGGTCACC 473 || || ||||| ||||||||| ||||||| ||||||||||||| ||||||||||| Sbjct 577 ATTGGTTTTAATTTAACCGAAACTCGGTTCGGCTCAGTTCCTAC----CGTTTGGTCACC 632 Query 474 AAAGTCTGCTTCTTCCTCTTTGTTCTTCAAAGTCTAAAAACTTCACCTTTGGCGGTGAGA 533 |||||||||| |||| | ||||||| || |||||||||||| || |||||||| |||||| Sbjct 633 AAAGTCTGCTGCTTCTTTTTTGTTC-TCTAAGTCTAAAAACCTCTCCTTTGGCTGTGAGA 691 Query 534 GAGCCAACGAGAAGAGAAAAAGTATCTTCCTTTGAGAAGTGCAAAGTCCATGGCAGCTCT 593 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 692 GAGCCAACGAGAAGAGAAAAAGTATCTTCCTTTGAGAAGTGC-AAGTCCATGGCAGCTCT 750 Query 594 C---TGTTGTCCTACCACCATCATCGTCTCCGGGAAGCTTTCTTCACGGATTAAAACCGC 650 | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 751 CTGTTGTTGTCCCACCACCATCATCGTCTCCGGGAAGGTTTCTTCACGGATTAAAACCGC 810 Query 651 AGGTCAATTACCCAGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAG 710 ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 AGGCCCATTACCCCGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAG 870 Query 711 GAACTTGATCGTGAAATCGATCATTGAAGACAGAGAAGCAATCGATTTTAAAAATGACAA 770 ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 871 AAACTTGATCGTTAAATCGATCATTGAAGACAGAGAAGCAATCGATGTTAAAAATGACAA 930 Query 771 TTTCAAGCCAGAGGAAG-A--A-C-------AAA-CAGAAGATACAGATCGGCTGATGAG 818 ||||||| ||||||||| | | | ||| |||||||||||||||||||||||| Sbjct 931 TTTCAAGGCAGAGGAAGAACTATCAGAAGATAAAGTAGAAGATACAGATCGGCTGATGAG 990 Query 819 TCGAGGAATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTCTT 878 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 991 TCGAGGTATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTTTT 1050 Query 879 AACCATCGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACC 938 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 AACCATTGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACC 1110 Query 939 TGAACACAATTGGGTTGCGTATGAACAAATTCTCAAAACAAACCCAGTTTTGGCGAAAAT 998 |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1111 TGAACATAATTGGTTTGCGTATGAACAAATTCTCAAAACAAACCCTGTTTTGGCGAAAAT 1170 Query 999 GGCCATCAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTTTGAAGGAAA 1058 ||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1171 GGCGATTAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTACGAAGGAAA 1230 Query 1059 ACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACCCT 1118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1231 ACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACACT 1290 Query 1119 CCATGGTTCACTCTCTCACTATTACTACCAATTCTGCGAGGCTCTCTTTCCTTTTCAAGA 1178 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1291 CCATGGTTCACTGTCTCACTATTACTACCAATTCTGTGAGGCTCTCTTTCCTTTTCAAGA 1350 Query 1179 ATGGTGGGTAGTTCCTGCAAAAGTCGCCTTTGATCAAACCGTATGGTCTGCAATTTGGAA 1238 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1351 ATGGTGGGTAGTCCCTGCAAAAGTCGCATTTGATCAAACCGTATGGTCTGCAATTTGGAA 1410 Query 1239 CAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAG 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1411 CAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAG 1470 Query 1299 CGAAATCCAGACGACATTTTGGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTAGC 1358 ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1471 CGAAATCAAGACAACATTTTTGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTGGC 1530 Query 1359 TCACTTGGTTACATACGGTGTAATTCCTGTAGACCAAAGGCTTCTCTGGGTGGATTGCAT 1418 ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || Sbjct 1531 ACACTTGGTTACATACGGTGTAATCCCTGTAGACCAAAGGCTTCTTTGGGTAGATTGTAT 1590 Query 1419 TGAACTCATATGGGTCACTATATTGTCGACTTACTCAAACGAAAAAGCTGAGGCGCAAGC 1478 |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 1591 TGAACTCATATGGGTCACTATATTATCAACTTACTCGAACGAAAAAGCTGAGGCGCAAGC 1650 Query 1479 ATCAGGGGAAACAAACTCCAGTTCTCACTCAGGCGAGGTTTGCCA 1523 ||||| |||||| |||||||||||||||||| ||||||||||||| Sbjct 1651 ATCAGAGGAAACGAACTCCAGTTCTCACTCAAGCGAGGTTTGCCA 1695 Score = 132 bits (71), Expect = 1e-29 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1563 TTGTGCCTGCAAATACTTGACAGGATTAGGCGATATCAGCATGTAGATTCAAGATTCTGT 1622 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | Sbjct 1780 TTGTGCCTGCAAATACTTGACAGGATTAGGTGATATCAGCATGTAGATTCTAGATTCTAT 1839 Query 1623 AGACTGTAGCTGGAGGTGGATGAAGAACA 1651 ||||| || | |||||||||||||||||| Sbjct 1840 AGACTCTAACAGGAGGTGGATGAAGAACA 1868 > AT4G03405.1 | Symbols: | pre-tRNA | chr4:1501607-1501678 FORWARD LENGTH=72 Length=72 Score = 122 bits (66), Expect = 8e-27 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATC 60 Query 336 TCGGTAGAACCt 347 ||||||| |||| Sbjct 61 TCGGTAGGACCT 72 > AT5G22315.1 | Symbols: | pre-tRNA | chr5:7387888-7387959 FORWARD LENGTH=72 Length=72 Score = 117 bits (63), Expect = 4e-25 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGTCCCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 60 Query 336 TCGGTAGAACCt 347 ||||| | |||| Sbjct 61 TCGGTGGGACCT 72 > AT3G61825.1 | Symbols: | pre-tRNA | chr3:22881807-22881878 FORWARD LENGTH=72 Length=72 Score = 117 bits (63), Expect = 4e-25 Identities = 68/70 (97%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 278 TCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTC 337 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 TCC-ATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTC 62 Query 338 GGTAGAACCt 347 ||| |||||| Sbjct 63 GGTGGAACCT 72 > AT1G03570.1 | Symbols: | pre-tRNA | chr1:892514-892585 FORWARD LENGTH=72 Length=72 Score = 117 bits (63), Expect = 4e-25 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGTCCCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 60 Query 336 TCGGTAGAACCt 347 ||||| | |||| Sbjct 61 TCGGTGGGACCT 72 > AT4G00985.1 | Symbols: | pre-tRNA | chr4:424717-424788 REVERSE LENGTH=72 Length=72 Score = 111 bits (60), Expect = 2e-23 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60 Query 336 TCGGTAGAACCt 347 |||||||||||| Sbjct 61 TCGGTAGAACCT 72 > AT4G27875.1 | Symbols: | pre-tRNA | chr4:13882917-13882988 REVERSE LENGTH=72 Length=72 Score = 111 bits (60), Expect = 2e-23 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60 Query 336 TCGGTAGAACCt 347 |||||||||||| Sbjct 61 TCGGTAGAACCT 72 > AT2G21700.1 | Symbols: | pre-tRNA | chr2:9270663-9270734 REVERSE LENGTH=72 Length=72 Score = 111 bits (60), Expect = 2e-23 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60 Query 336 TCGGTAGAACCt 347 |||||||||||| Sbjct 61 TCGGTAGAACCT 72 > AT2G16240.1 | Symbols: | pre-tRNA | chr2:7039094-7039165 FORWARD LENGTH=72 Length=72 Score = 111 bits (60), Expect = 2e-23 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 276 GGTCCTATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTC 335 ||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1 GGTTCTATGGTCTAGCGGTTAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAATTC 60 Query 336 TCGGTAGAACCt 347 |||||||||||| Sbjct 61 TCGGTAGAACCT 72 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81575885625 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5