BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490225
Length=3176
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03390.1 | Symbols: SRF3 | STRUBBELIG-receptor family 3 | ch... 4604 0.0
AT5G46315.1 | Symbols: U6-29 | U6-29; snRNA | chr5:18787079-187... 60.2 1e-07
> AT4G03390.1 | Symbols: SRF3 | STRUBBELIG-receptor family 3 |
chr4:1490465-1495103 REVERSE LENGTH=3250
Length=3250
Score = 4604 bits (2493), Expect = 0.0
Identities = 2799/2939 (95%), Gaps = 52/2939 (2%)
Strand=Plus/Plus
Query 1 TGAAGAACTTTAACTCTTTCTTAAACCC--A-AATTTCTGAATTTCTCCAGTTCTTTCTT 57
|||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 4 TGAAGAACTTAAACTCTGTCTTAAACCCAAATAATTTCTGAATTTCTCCAGTTCTTTCTT 63
Query 58 CTTAATTCGCAGGTTTTGGTCCCTCCGCTGAAATTAGGAAAAAGTTTCCTTTTTTCGTTC 117
||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 64 CTTAATTTGCAGGTTTTGGTCCCACCGCTTAAATTAGGAAAAAGTTTCC-TTTTTCGTTC 122
Query 118 TGGGTTTTGGTCTTTTTCTT-CTCTGATTAGTATTCCTCGAGTGTCGAGCTTTATTCTCA 176
|||||||| || | | || | ||||| ||||||||||||||||||||||||||||
Sbjct 123 TGGGTTTTCTTC-TCTGATTATTATGATT--CATTCCTCGAGTGTCGAGCTTTATTCTCA 179
Query 177 AGTGTCAAATTATTGAGAGGGTAAAATTTACTTCAACGACGAAAGTTCATTGAACCTTAG 236
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTGTCAAATTATT--GAGGGTAAAATTTACTTCAACGACGAAAGTTCATTGAACCTTAG 237
Query 237 CTCTTACGTTGCGTCTTAAATCTCATTCTCACCCACATAAACAAAAACATAAAGTTTGCA 296
|||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||
Sbjct 238 CTCTTACGTTGCGTCTTAAATCTCATTCTCACCCAC---AA-AAAAAGA-AAAGTTTGCA 292
Query 297 ----tttt-t-t-tCAGGATTGGGTTTTTGGGGAATTTAAAGG-ACA-A---TA--C-TT 341
|||| | | |||||||||||||||| ||||||||||||| | | | || | ||
Sbjct 293 TTTTTTTTATCTCTCAGGATTGGGTTTTT-GGGAATTTAAAGGAAAAGACTTTACCCTTT 351
Query 342 TA--CCtttt--tttCACCAA-CCATT-GAGCTCGTTGATGACGATCCCTCTACTTTTCC 395
|| | |||| ||||||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 352 TATTCGTTTTAATTTCACCAACCCATTAAAGCTCGTTGATGACGATTCCTCTGCTTTTCC 411
Query 396 AATTCGTAGACATCGTTTTGTTCGATTGATGTGTTGC-TTTTAACTCCACTCTGACTTGG 454
||||||| |||||||||||||||||||||||| || | |||| |||| ||||||||||||
Sbjct 412 AATTCGTGGACATCGTTTTGTTCGATTGATGT-TT-CGTTTT-ACTCTACTCTGACTTGG 468
Query 455 AACAATGGCTGCTAAGAGATCTATCTACTGTCTTCTTCTTCTTCCTCTGCTCTTGTCTTT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AACAATGGCTGCTAAGAGATCTATCTACTGTCTTCTTCTTCTTCCTCTGCTCTTGTCTTT 528
Query 515 ACTGATCTGGATTCCTTCGATCTCTTTAGCTGCTACTAACCCTGCTGATGTTGCTGCAAT 574
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 529 ACTGATCTGGATTCCTTCGATCTCCTTAGCTGCTACTAACCCTGATGATGTTGCTGCAAT 588
Query 575 TAACGGATTATTCGCTGCCCTTGGCGCACCTGTTCTTCCTGGTTGGATTGCTTCTGGTGG 634
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 589 TAACGGATTATTCGCTGCACTTGGAGCACCTGTTCTTCCTGGTTGGATTGCTTCTGGTGG 648
Query 635 AGACCCATGTGGTGAAGCTTGGCAAGGCATTATCTGCAATGTTTCAGATATAATAAGCAT 694
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 AGACCCATGTGGTGAAGCTTGGCAAGGCATTATCTGCAATGTTTCAGATATTATAAGCAT 708
Query 695 AACTGTAAATGCTGCAAATTTGCAAGGAGAGCTTGGTGACAACTTAGCTAAGTTCACTTC 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AACTGTAAATGCTGCAAATTTGCAAGGAGAGCTTGGTGACAACTTAGCTAAGTTCACTTC 768
Query 755 TATCAGGGGAATAGATTTCAGCAACAATCGCATTGGAGGAAGCATACCTTCTACTTTACC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 769 TATCAGGGGAATAGATTTCAGCAACAATCGCATTGGAGGAAGCATACCTTCTACTTTGCC 828
Query 815 GGTTACATTGCAGCAtttttttCTTTCAGCTAATCAGTTCACCGGAAGTATCCCAGAATC 874
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 829 GGTTACATTGCAGCATTTTTTTCTTTCAGCTAATCAGTTCACCGGAAGCATCCCGGAATC 888
Query 875 TCTAGGAACATTGAGTTTTCTGAATGACATGTCTTTGAACGATAACCTTCTCTCAGGAGA 934
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 889 TCTAGGAACATTGAGTTTTCTGAATGACATGTCTTTGAACGATAACCTTCTCTCTGGAGA 948
Query 935 GCTGCCTGACGTGTTTCAAAACCTTGTCGGGCTGATTAATCTTGATATATCATCTAACAA 994
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GCTACCCGACGTGTTTCAAAACCTTGTCGGGCTGATTAATCTTGATATATCATCTAACAA 1008
Query 995 TCTAAGCGGCACATTGCCTCCTTCAATGGAGAACTTATCAACTCTTACAACATTACGTGT 1054
| |||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 1009 TATAAGCGGCACATTGCCTCCTTCTATGGAGAATTTATTAACTCTTACAACATTACGTGT 1068
Query 1055 TCAGAACAATCAGCTCTCAGGAACTCTGGACGTCCTTCAAGGCCTTCCTCTTCAAGACTT 1114
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 TCAGAACAATCAGCTCTCAGGAACTCTGGACGTTCTTCAAGGCCTTCCTCTTCAAGACTT 1128
Query 1115 AAACATAGAGAATAACCTCTTCTCTGGACCCATACCGGACAAATTACTAAGCATTCCGAA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AAACATAGAGAATAACCTCTTCTCTGGACCCATACCGGACAAATTACTAAGCATTCCGAA 1188
Query 1175 ATTCCTAAATGAAGGAAACCCGTTCAATGCCACCACAATCAATTCCACCTCGACTGCACC 1234
||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1189 ATTCCTACATGAAGGAAACCCGTTCAATGCCACAATGATCAATTCCACCTCGACTGCACC 1248
Query 1235 ATCGTTGTCTCCGTCTATGTCTCCAACAAAACCAGCTCCAACGCGACCGTTTTCTGGAGT 1294
||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1249 ATCATTGTCTCCGTCTCTATCTCCAACAAAACCAGCTCCAACGCGACCATTTTCTGGAGT 1308
Query 1295 TCCACCTCCTCCAACTGAGAGGAATCGAGGGAAAGTTGCTGATGGACCTTCTGATTCAGA 1354
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TCCACCTCCTCCAAATGAGAGGAATCGAGGGAAAGTTGCTGATGGACCTTCTGATTCAGA 1368
Query 1355 AGGATCGAGTTCTGAGAATTCAAAGGGAAAGAACTCTTCACATACTAAAAGGATAATCCT 1414
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1369 AGGATCGAGCTCTGAGAATTCAAAGGGAAAGAACTCTTCACATACTAAAAAGATAATCCT 1428
Query 1415 TCTTGCATTCGCTGGCGTCCTCGTCTTCATAATTCTGGTTTTGGCAATACTCTTGCTGTT 1474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TATTGCATTCGCTGGCGTCCTCGTCTTCATAATTCTGGTTTTGGCAATACTCTTGCTGTT 1488
Query 1475 GCCAAAATGTGCAAGACGAAGAGAACATGCTAACAGAGTCTTCAAACCGCATCAAGTTGG 1534
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1489 GCCAAAATGTGCAAGACGTAGAGAACATGCTAACAGAGTTTTCAAACCGCATCAAGTTGG 1548
Query 1535 TGCTGATAGAGGAAGCAGAGAGAATGCTCTGGAAAATGGG-CTTCCAGTACCGCCACCAC 1593
|||||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||
Sbjct 1549 TGCTGATAGAGGAAGCAGAGAGAATGCTCTGGAAAACGGGACT-CCGGTACTGCCACCAC 1607
Query 1594 CTGCTCGATCTGAAAAAGTTCAAAGGGAACCCTTCAAGAAAGCTGGAGAGGAACCAAAGG 1653
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1608 CTGGTCGATCTGAAAAAGTTCAAAGAGAACCCTTCAAGAAAGCTGGAGAGGAACCAAAGG 1667
Query 1654 TTTTACATGACCTTGAGAGGTTGCGGAGACCTGCGCCTATATCAAGACAGGAAAGTCAAG 1713
| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1668 TCTTACATGACCTTGAGAGGCTGCGGAGACCTGCACCTATATCAAGACAGGAAAGTCAAG 1727
Query 1714 ATATTGACTTTTCAATGTTGATGcctcctcctccgccacctcctccaccgccaccacctc 1773
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1728 ATATTGACTTTTCAATGTTGATGCCTCCTCCTCCACCACCTCCACCACCACCACCACCTC 1787
Query 1774 ctcctTTGGCTGAGAAGGTCTCCGTTATGCCAATTATATCACCCGAAAGACCCGTTAAGA 1833
||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1788 CTCCTTTGGATGAGAAGGTCACGGTTATGCCAATCATATCACCCGAAAGACCCGTTAAGA 1847
Query 1834 AACCTTCCCCTAAACGCTTACCCTTAACTTCTGTGAAGCACTACTCTATTGCATCTCTTC 1893
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1848 AAACTTCCCCTAAACGCTTACCCTTAACTTCTGTGAAGCACTATTCTATTGCTTCTCTTC 1907
Query 1894 AACAATACACAGAAAGCTTCGCTCAGGAAAATCTCATTGGCTCAGGCATGCTCGGGAGTG 1953
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1908 AACAATACACGGAAAGCTTCGCTCAGGAAAATCTCATTGGCTCAGGCATGCTCGGTAGTG 1967
Query 1954 TTTATAGGGCCCGGCTTCCCAATGGAAAGTTGTTTGCTGTCAAGAAGTTGGACAAGAGGG 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTTATAGGGCCCGGCTTCCCAATGGAAAGTTGTTTGCTGTCAAGAAGTTGGACAAGAGGG 2027
Query 2014 CTTCTGAACAACAACAGGATCACGAATTTATCGAACTAGTGAACAATATAGATAAGATTC 2073
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2028 CTTCTGAACAACAACAGGATCACGAATTTATCGAACTAGTGAACAATATAGATATGATTC 2087
Query 2074 GCCACTCCAATATCGTTGAACTTGCGGGTTACTGTGCTGAGCACGATCAAAGACTATTGG 2133
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2088 GCCACTCCAATATCGTTGAACTTGTGGGTTACTGTGCTGAGCACGATCAAAGACTATTGG 2147
Query 2134 TCTACGAATATTGCAGTAACGGTACGTTACAAGACGGGTTGCATTCAGACGAAGAATTCA 2193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2148 TCTACGAATATTGCAGTAACGGTACGTTACAAGACGGGTTGCATTCAGACGATGAATTCA 2207
Query 2194 AGAAGAAACTTTCGTGGAATACCCGTATCAGTATGGCACTTGGAGCTGCTAGAGCCCTTG 2253
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2208 AGAAGAAACTTTCGTGGAATACCCGTGTCAGTATGGCACTTGGAGCTGCTAGAGCCCTTG 2267
Query 2254 AGTACTTGCATGAGGTGTGTGAACCATCTATCATACACAGAAACTTCAAATCAGCCAATG 2313
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2268 AGTACTTGCATGAGGTGTGTGAACCACCTATCATACACAGAAACTTCAAATCAGCCAATG 2327
Query 2314 TTCTACTCGACGATGACCTGAGTGTTCTTGTCTCAGATTGTGGTTTGGCCCCACTAATAT 2373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 TTCTACTCGACGATGACCTGAGTGTTCTTGTCTCAGATTGTGGTTTGGCCCCACTAATAT 2387
Query 2374 CATCAGGCTCTGTGAGTCAGTTATCAGGACAATTGCTAGCCGCTTACGGATATGGAGCTC 2433
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2388 CATCAGGCTCTGTGAGTCAGTTATCAGGGCAATTGCTAGCCGCTTACGGATATGGAGCTC 2447
Query 2434 CAGAGTTCGACTCTGGAATCTATACATGGCAGAGTGATGTATATAGTTTTGGTGTTGTTA 2493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 CAGAGTTCGACTCTGGAATCTATACATGGCAGAGTGATGTATATAGTTTTGGTGTTGTTA 2507
Query 2494 TGTTAGAACTCTTGACGGGTAGAATGTCCTATGATAGGGACCGGAGTAGAGGAGAGCAGT 2553
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2508 TGTTAGAACTATTGACGGGTAGAATGTCCTACGATAGGGACCGGAGTAGAGGAGAGCAGT 2567
Query 2554 TCTTGGTGAGGTGGGCAATCCCTCAGCTTCACGATATTGATGCATTAGGG-AAAATGGTT 2612
|||||||||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||
Sbjct 2568 TCTTGGTGAGGTGGGCAATCCCACAGCTTCATGATATCGATGCATT-GGGCAAAATGGTT 2626
Query 2613 GATCCATCTCTCAATGGACAATACCCTGCAAAGTCGTTGTCACACTTTGCTGATATAATT 2672
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2627 GATCCATCTCTTAATGGACAATACCCTGCAAAGTCATTGTCACACTTTGCTGATATAATA 2686
Query 2673 TCCCGGTGTGTTCAGTCTGAACCAGAATTCAGACCATTGATGTCAGAAGTTGTTCAAGAT 2732
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2687 TCCCGGTGTGTTCAGTCTGAACCAGAATTTAGACCACTGATGTCAGAAGTTGTTCAAGAT 2746
Query 2733 CTACTAGATATGATCAGAAGAGAGCGTCATGGTTCGGGTGATTCTACCGCAGACTAGTGA 2792
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2747 CTACTAGATATGATCAGAAGAGAGCGTCATGGTTCGGGTGATTCTACCGCGGACTAGTGA 2806
Query 2793 ATTGTAAAGAAGCATTTTTT-ATCGGATCATCTCTGTGAATTCGTGGAAACAAGAGATGT 2851
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2807 ATTGTAAAGAAGCATTTTTTTATCGGATCATCTCTGTGAATTCGTGGAAACAAGAGATGT 2866
Query 2852 TCAGTTCTCAGAAACAACAACA------TAGGGAACTAAACCAGACACATaaaaaaaaa 2904
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2867 TCAGTTCTCAGAAACAACAACAACAACATAGGGAACTAAACCAGACACATAAAAAAAAA 2925
Score = 351 bits (190), Expect = 2e-95
Identities = 255/284 (90%), Gaps = 14/284 (5%)
Strand=Plus/Plus
Query 2903 aaGGAGGCTTAAGCTGATTCTACAGCC--AAGAAGAGGACTCTAAGGAAAAGGATCAATG 2960
||||||||||||||||||||||||||| |||| || ||| | || ||||||||||||
Sbjct 2956 AAGGAGGCTTAAGCTGATTCTACAGCCTTGTGAAGTGG-CTC-AGGGGAAAGGATCAATG 3013
Query 2961 TGGCTTGCTTCCAATGGGGGATGATTCGATTGGTGCAGAGTTTCTTTTTGTGAATCTTGA 3020
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3014 T-GCTTGCTTCCAATGGGCGATGATTCGATTGGTGCAGAGTTTCTTTTTGTGAATCTTGA 3072
Query 3021 ATCATCTCTTTTAGTAATATTTGTTGGTTGAAGACCTCAACTGTAAAATGGTGTGTTTAC 3080
||||||| | |||||||||| | ||||||||||||||| |||||||||||||||||| ||
Sbjct 3073 ATCATCTGTGTTAGTAATATGTATTGGTTGAAGACCTCTACTGTAAAATGGTGTGTT-AC 3131
Query 3081 TCGATTCTTTGAACTTGTTTTA------CTT-AAA-GCTCATAGAACTTGCTCTGTGTTA 3132
|||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 3132 TCGATTCTTTGAACTTGTTTTATTAAAACTTTAAAAGCTCATAGAACTTGCTCTGTGTTG 3191
Query 3133 TATTCTTTTAGTATGTGTGTGACTTTGTGTATTTGTACCTGTAA 3176
|||||||||||||||||||||||| |||||||||| |||||||
Sbjct 3192 TATTCTTTTAGTATGTGTGTGACTAAGTGTATTTGTGCCTGTAA 3235
> AT5G46315.1 | Symbols: U6-29 | U6-29; snRNA | chr5:18787079-18787990
FORWARD LENGTH=912
Length=912
Score = 60.2 bits (32), Expect = 1e-07
Identities = 37/39 (95%), Gaps = 2/39 (5%)
Strand=Plus/Plus
Query 2334 AGTGTTCTTGTCTCAGATTGTGGTTTGGCCC-CAC-TAA 2370
||||||||||||||||||||||||||||||| ||| |||
Sbjct 645 AGTGTTCTTGTCTCAGATTGTGGTTTGGCCCTCACATAA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157975703507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5