BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490227
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03330.1 | Symbols: SYP123, ATSYP123 | syntaxin of plants 12... 1803 0.0
> AT4G03330.1 | Symbols: SYP123, ATSYP123 | syntaxin of plants
123 | chr4:1466336-1467750 FORWARD LENGTH=1252
Length=1252
Score = 1803 bits (976), Expect = 0.0
Identities = 1107/1171 (95%), Gaps = 6/1171 (1%)
Strand=Plus/Plus
Query 50 TTAAAGGTCTCTCTAGCTTCATGCCAACCATCT--A--AACCACCATTAATGTTCCTCTG 105
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 78 TTAAAGGTCTCTCTAGCTTCATGTCAACCATCTAAACCAACCACCATTAATGTTCCTCTG 137
Query 106 CCCATTTCCAAGAAATTAGAGCTTATTTTTCTCTAATTTCTTAATCGTCGCCATGAACGA 165
||||||| |||||||||||| | |||||||||||| ||||| |||||||||||||||||
Sbjct 138 CCCATTTTCAAGAAATTAGAAATCATTTTTCTCTAAGTTCTTGATCGTCGCCATGAACGA 197
Query 166 TCTAATCTCTAGTTCATTCAAGAGATACACAGACTTAAACCACCAAGTCCAACTCGATGA 225
||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 198 TCTTATCTCAAGCTCATTCAAGAGATACACAGACTTAAACCACCAGGTCCAACTCGATGA 257
Query 226 CATCGAGTCTCAAAATGTTTCTCTCGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 285
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 258 CATCGAGTCTCAAAATGTTTCTCTTGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 317
Query 286 CGAGAGTGTCAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 345
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CGAGAGTGTTAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 377
Query 346 TAATGAAGAGTCCAAGACCGTACATGACTCCAAGGCCGTTAAAAAGCTTCGTGCTCGTAT 405
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 378 TAATGAAGAGTCCAAGACCGTACATGATTCCAAGGCCGTGAAGAAGCTTCGTGCTCGTAT 437
Query 406 GGATTCGAATGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGTCGAAGCTTGTGGC 465
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 438 GGATTCGAGTGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGACTAAGCTTGTAGC 497
Query 466 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 557
Query 526 TGATCGGACAAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 585
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TGATCGGACCAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 617
Query 586 TGATTTTCAGAGACTAAGAACCAAAATGGCTACTGAGTATAAAGAAACAGTTGAGAGACG 645
|||||||||||||||| ||||||||||||||||||| || |||||||| || |||||| |
Sbjct 618 TGATTTTCAGAGACTACGAACCAAAATGGCTACTGAATACAAAGAAACGGTCGAGAGAAG 677
Query 646 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACAGTCGAGAAGCTCATATCGAG 705
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 678 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACGGTCGAGAAGCTCATATCGAG 737
Query 706 CGGAGAGAGTGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAAATAAT 765
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 738 CGGAGAGAGCGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAGGTCAT 797
Query 766 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTTAAAGAGATAGAACGGAGTCT 825
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 798 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTCAAGGAGATAGAACGGAGTCT 857
Query 826 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTTGAAGCTCAAGGGAATAT 885
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 858 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTCGAAGCTCAAGGGAATAT 917
Query 886 GCTCAACGACATCGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 945
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GCTCAATGACATTGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 977
Query 946 TCAATTGCACGGGGCTAAAGTACTTCAGAGGAACT-CAAGGAAATGGACTTGTATTGCCA 1004
||||||||| |||||||||||||||||||||||| || |||||||| ||||||| ||||
Sbjct 978 TCAATTGCATGGGGCTAAAGTACTTCAGAGGAACAACA-GGAAATGGGCTTGTATCGCCA 1036
Query 1005 TTATCCTCGCTATTGTACTTGTTATTGTGATTCTTTTCCCAATCCTCTATACCAATGTAC 1064
|||||||||||||||| |||||||||||||||||||||||||||||| || || | |||
Sbjct 1037 CTATCCTCGCTATTGTAGTTGTTATTGTGATTCTTTTCCCAATCCTCTTTAACACTCTAC 1096
Query 1065 TTAAACCTTGATTTCAAAAGGCAACTTCTTGTTTTCTTCAAACTCTTTTTGTTAGAGCCC 1124
|| ||||||||||||||| | ||||| ||||||||| ||||||| ||||||||||||||
Sbjct 1097 TTCGACCTTGATTTCAAAATGTAACTTATTGTTTTCTCCAAACTCCTTTTGTTAGAGCCC 1156
Query 1125 TTTCAATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTAAAGCTCTCTCTA 1184
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1157 TTTCGATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTGAAGCTCTCTCTA 1216
Query 1185 ACCATTCTTGCTATTGTAATTGCTTTGTATC 1215
||||||||||||| |||||||||||| ||||
Sbjct 1217 ACCATTCTTGCTACTGTAATTGCTTTATATC 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5