BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490227 Length=1215 Score E Sequences producing significant alignments: (Bits) Value AT4G03330.1 | Symbols: SYP123, ATSYP123 | syntaxin of plants 12... 1803 0.0 > AT4G03330.1 | Symbols: SYP123, ATSYP123 | syntaxin of plants 123 | chr4:1466336-1467750 FORWARD LENGTH=1252 Length=1252 Score = 1803 bits (976), Expect = 0.0 Identities = 1107/1171 (95%), Gaps = 6/1171 (1%) Strand=Plus/Plus Query 50 TTAAAGGTCTCTCTAGCTTCATGCCAACCATCT--A--AACCACCATTAATGTTCCTCTG 105 ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct 78 TTAAAGGTCTCTCTAGCTTCATGTCAACCATCTAAACCAACCACCATTAATGTTCCTCTG 137 Query 106 CCCATTTCCAAGAAATTAGAGCTTATTTTTCTCTAATTTCTTAATCGTCGCCATGAACGA 165 ||||||| |||||||||||| | |||||||||||| ||||| ||||||||||||||||| Sbjct 138 CCCATTTTCAAGAAATTAGAAATCATTTTTCTCTAAGTTCTTGATCGTCGCCATGAACGA 197 Query 166 TCTAATCTCTAGTTCATTCAAGAGATACACAGACTTAAACCACCAAGTCCAACTCGATGA 225 ||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 198 TCTTATCTCAAGCTCATTCAAGAGATACACAGACTTAAACCACCAGGTCCAACTCGATGA 257 Query 226 CATCGAGTCTCAAAATGTTTCTCTCGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 285 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 258 CATCGAGTCTCAAAATGTTTCTCTTGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 317 Query 286 CGAGAGTGTCAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 345 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 318 CGAGAGTGTTAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 377 Query 346 TAATGAAGAGTCCAAGACCGTACATGACTCCAAGGCCGTTAAAAAGCTTCGTGCTCGTAT 405 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 378 TAATGAAGAGTCCAAGACCGTACATGATTCCAAGGCCGTGAAGAAGCTTCGTGCTCGTAT 437 Query 406 GGATTCGAATGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGTCGAAGCTTGTGGC 465 |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 438 GGATTCGAGTGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGACTAAGCTTGTAGC 497 Query 466 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 557 Query 526 TGATCGGACAAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 585 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 TGATCGGACCAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 617 Query 586 TGATTTTCAGAGACTAAGAACCAAAATGGCTACTGAGTATAAAGAAACAGTTGAGAGACG 645 |||||||||||||||| ||||||||||||||||||| || |||||||| || |||||| | Sbjct 618 TGATTTTCAGAGACTACGAACCAAAATGGCTACTGAATACAAAGAAACGGTCGAGAGAAG 677 Query 646 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACAGTCGAGAAGCTCATATCGAG 705 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 678 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACGGTCGAGAAGCTCATATCGAG 737 Query 706 CGGAGAGAGTGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAAATAAT 765 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 738 CGGAGAGAGCGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAGGTCAT 797 Query 766 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTTAAAGAGATAGAACGGAGTCT 825 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 798 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTCAAGGAGATAGAACGGAGTCT 857 Query 826 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTTGAAGCTCAAGGGAATAT 885 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 858 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTCGAAGCTCAAGGGAATAT 917 Query 886 GCTCAACGACATCGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 945 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 GCTCAATGACATTGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 977 Query 946 TCAATTGCACGGGGCTAAAGTACTTCAGAGGAACT-CAAGGAAATGGACTTGTATTGCCA 1004 ||||||||| |||||||||||||||||||||||| || |||||||| ||||||| |||| Sbjct 978 TCAATTGCATGGGGCTAAAGTACTTCAGAGGAACAACA-GGAAATGGGCTTGTATCGCCA 1036 Query 1005 TTATCCTCGCTATTGTACTTGTTATTGTGATTCTTTTCCCAATCCTCTATACCAATGTAC 1064 |||||||||||||||| |||||||||||||||||||||||||||||| || || | ||| Sbjct 1037 CTATCCTCGCTATTGTAGTTGTTATTGTGATTCTTTTCCCAATCCTCTTTAACACTCTAC 1096 Query 1065 TTAAACCTTGATTTCAAAAGGCAACTTCTTGTTTTCTTCAAACTCTTTTTGTTAGAGCCC 1124 || ||||||||||||||| | ||||| ||||||||| ||||||| |||||||||||||| Sbjct 1097 TTCGACCTTGATTTCAAAATGTAACTTATTGTTTTCTCCAAACTCCTTTTGTTAGAGCCC 1156 Query 1125 TTTCAATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTAAAGCTCTCTCTA 1184 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1157 TTTCGATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTGAAGCTCTCTCTA 1216 Query 1185 ACCATTCTTGCTATTGTAATTGCTTTGTATC 1215 ||||||||||||| |||||||||||| |||| Sbjct 1217 ACCATTCTTGCTACTGTAATTGCTTTATATC 1247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59688448005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5