BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490228
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03320.1 | Symbols: tic20-IV | translocon at the inner envel... 1426 0.0
AT4G03310.1 | Symbols: | transposable element gene | chr4:1460... 60.2 3e-08
> AT4G03320.1 | Symbols: tic20-IV | translocon at the inner envelope
membrane of chloroplasts 20-IV | chr4:1464467-1466165
FORWARD LENGTH=1262
Length=1262
Score = 1426 bits (772), Expect = 0.0
Identities = 867/913 (95%), Gaps = 5/913 (1%)
Strand=Plus/Plus
Query 1 TTTTTTACTATCGAAACCCTAAAGCCTCGAAGGTTCTTTCGCCGGAGAAAAAATTATGCA 60
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 8 TTTTTTAATATCGAAACCCTAAAGCCTCGAAGGTTCTCTCGCCGGAGAAGAAATTATGCA 67
Query 61 GGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCCAGGAACCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 68 GGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCGAGGAACCA 127
Query 121 TAGTCCAATTTCAAAGAAACTTGTGAATCCAAGAGTGTTCTTCCCCAACGTTGATTCATC 180
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 128 TAGTCCAATTTCAAAGAAATTTGTGAATCCAAGAGTGTTCTTTCCCAACGTTGATTCATC 187
Query 181 CCCAAACTTAAGATTGTCAGCTAGCTCAATTTCCCAGAGATGTCCTCGAGAGATTACTCC 240
| |||| |||||||| ||||||||||||||||| | ||||||||| ||||||||| ||||
Sbjct 188 CGCAAAATTAAGATTATCAGCTAGCTCAATTTCACGGAGATGTCCACGAGAGATTGCTCC 247
Query 241 TCTTACAGCGACTGCATCTGTGGACTTTTCAGCAG--G-ATCATCA-CCTAACCAGCTCT 296
|||| |||| |||||||||||||||||| |||||| | | ||||| || ||||||||||
Sbjct 248 TCTTTCAGCAACTGCATCTGTGGACTTTGCAGCAGCAGCAACATCATCC-AACCAGCTCT 306
Query 297 TTGCTTATGGCTTTCCATCATTAGCTCCTGGTTTGAAAAGAAACCGGAGACCGATAGAGC 356
||||| ||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 307 TTGCTAATGGCTTGCCACCATTAGCTCCTGGTTTGAGAAGACACCGGAGACCGATAGAGC 366
Query 357 CTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGAC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGAC 426
Query 417 CTGAATGGTGGTGGAGGACATTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTG 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTGAATGGTGGTGGAGGACGTTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTG 486
Query 477 ATGTTGGGTTCTATGTCCAACCGTTTCTAGAAAAGCATGATGCGATTGGAGACATGATAT 536
||||||| |||||||||||||| ||||| |||||||| || || ||||| ||||||||||
Sbjct 487 ATGTTGGTTTCTATGTCCAACCTTTTCTCGAAAAGCACGACGCTATTGGGGACATGATAT 546
Query 537 ATTTCATCCCGGGAGCGATAAACAGATGGCCAACCTGGTTCTTCATGGTGTACTGCTACT 596
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 547 ATTTCATCCCGGGAGCGATAAACAGATGGCCGACATGGTTCTTCATGGTGTACTGCTACT 606
Query 597 TGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCATATGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 607 TGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCACATGA 666
Query 657 TGATGGGTATGCTTCTTGAAACGGCTCTTCAGGTCATATGGTGCACGAGCAATTTCTTCC 716
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 667 TGATGGGTATGCTTCTTGAAACAGCTCTTCAGGTCATATGGTGCACTAGCAATTTCTTCC 726
Query 717 CGTTGATTCATTTCAAAGGACGGTTTGGGATGTATTATTGGATGGCCATCGGATTCACCT 776
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 727 CGCTGATTCATTTCAAAGGACGGTTCGGAATGTATTATTGGATGGCCATCGGATTCACCT 786
Query 777 ACATATGTCTGCTTCTCGAATGCATACGGTGTGCTCTTGCTGGAGTCTATGCTCAGATTC 836
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 787 ACATATGTCTGCTTCTCGAATGCATACGGTGCGCTCTTGCTGGAGTCTATGCTCAGATTC 846
Query 837 CTTTCATGACAGATGCTGCATCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGAC 896
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CTTTCATGACAGATGCTGCTTCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGAC 906
Query 897 CACTTAGGTGAAA 909
|||| ||||||||
Sbjct 907 CACTCAGGTGAAA 919
> AT4G03310.1 | Symbols: | transposable element gene | chr4:1460159-1464144
FORWARD LENGTH=3986
Length=3986
Score = 60.2 bits (32), Expect = 3e-08
Identities = 42/46 (91%), Gaps = 3/46 (7%)
Strand=Plus/Plus
Query 51 AAATTATGCAGGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCT 96
|||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 3757 AAATTATGCAGGGTTTGGCGGCGACCAC-AG-A-CCGTGGCTCTCT 3799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5