BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490231
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03280.1 | Symbols: PETC, PGR1 | photosynthetic electron tra... 1578 0.0
> AT4G03280.1 | Symbols: PETC, PGR1 | photosynthetic electron transfer
C | chr4:1440146-1441863 FORWARD LENGTH=1004
Length=1004
Score = 1578 bits (854), Expect = 0.0
Identities = 966/1017 (95%), Gaps = 20/1017 (2%)
Strand=Plus/Plus
Query 1 TGTGGCTATGTGGAAACAGAGGCTGGCGCGTGCCTTATCTGCTTCTCTCTCTTCAGTGGT 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TGTGGCTATGTGGAAGCAGAGGCTGGCGCGTGCCTTATCTGCTTCTCTCTCTCCAGTGGT 60
Query 61 CTGAAATCTCTCTGTGTGATCCCACTTGTCATCCTCCTCCACAACATAAAGCTTCAGACC 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CTCAAATCTCTCTGTGTGATCCCACTTGTCATCCTCCTCCACAACATAAAGCTTGAGACC 120
Query 121 AAAACCCTTTAGCGTTTTCGGCTAGAGCTTTCGATG---ACTACATCAATGGCGTCCTCC 177
| |||||||||||||||||||||| |||||||| || |||||| |||||||||||||
Sbjct 121 ATAACCCTTTAGCGTTTTCGGCTAAAGCTTTCGCTGACTACTACAACAATGGCGTCCTCA 180
Query 178 TCCCTTTCCCCTGCTACTCAGCTTGGTTCAAGCAGAAGTGCTTTGATGGCGATGTCGCGT 237
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 181 TCCCTTTCCCCTGCTACTCAGCTTGGTTCTAGCAGAAGTGCTTTGATGGCGATGTCAAGT 240
Query 238 GGGTTGTTTGTGAAGCCAACGAAGACGAATCATCAAATGGTTAGAAAAGAGAAGATTGGA 297
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTTGTTTGTGAAGCCAACGAAGATGAATCATCAAATGGTTAGAAAAGAGAAGATTGGA 300
Query 298 TTGAGAATTGCTTGTCAAGCGTCGAGTATTCCAGCAGACAGAGTCCCAGATATGGAAAAG 357
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TTGAGAATTTCTTGTCAAGCGTCGAGTATTCCAGCAGACAGAGTTCCAGATATGGAAAAG 360
Query 358 AGGAAG-CTTTTGAATCTTCTTCTTGTTGGGGCTCTTTCTCTACCTACTGGCTACATGCT 416
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAAGAC-TTTGAATCTTCTTCTTCTTGGGGCTCTTTCTCTACCTACTGGCTACATGCT 419
Query 417 TGTCCCTTACGCTACCTTCTTTGTTCCTCCTGGAACTGGAGGTGGAGGTGGTGGTACTCC 476
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TGTCCCTTACGCTACCTTCTTTGTTCCTCCTGGAACCGGAGGTGGAGGTGGTGGTACTCC 479
Query 477 AGCCAAAGATGCACTTGGAAACGATGTAGTTGCTGAC-GAATGGCTTAAGACTCATGGTC 535
|||||| ||||| |||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 480 AGCCAAGGATGCCCTTGGAAACGATGTAGTTGCAG-CGGAATGGCTTAAGACTCATGGTC 538
Query 536 CCGGTGACAGAACCCTGACCCAAGGATTAAAGGGAGATCCGACTTACCTAGTTGTAGAGA 595
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCGGTGACCGAACCTTGACCCAAGGATTAAAGGGAGATCCGACTTACCTAGTTGTAGAGA 598
Query 596 ACGACAAGACTCTAGCAACATACGGTATCAACGCAGTGTGCACTCATCTTGGATGTGTTG 655
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGACAAGACTCTAGCGACATACGGTATCAACGCAGTGTGCACTCATCTTGGATGTGTTG 658
Query 656 TGCCATGGAACAAAGCTGAGAACAAGTTTCTATGTCCTTGCCATGGATCCCAATACAACG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCCATGGAACAAAGCTGAGAACAAGTTTCTATGTCCTTGCCATGGATCCCAATACAACG 718
Query 716 CCCAAGGAAGAGTCGTTAGAGGTCCAGCGCCATTGTCGCTAGCGTTGGCTCACGCGGACA 775
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 719 CCCAAGGAAGAGTCGTTAGAGGTCCAGCCCCATTGTCGCTAGCGTTGGCTCACGCGGATA 778
Query 776 TAGATGATA-CTGGGAAGGTTCTTTTTGTACCATGGGTGGAAACTGACTTCAGGACTGGT 834
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 TAGATGA-AGCTGGGAAGGTTCTTTTTGTTCCATGGGTGGAAACTGACTTCAGGACTGGT 837
Query 835 GATGCTCCATGGTGGTCTTAAAATTCTTCAACAAATCTTCAACAAGAGAAGAAGAAAGAT 894
||||||||||||||||||||| | |||||||||| || || ||| ||| | |||
Sbjct 838 GATGCTCCATGGTGGTCTTAAGACTCTTCAACAAG-----AA-AA-AGA-GAA-A--GAT 886
Query 895 TTGGTCTTTTTGTGTAAGACTTGTTTGAATGTTCTTATAATGTAAAAGCTACATTTCATG 954
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 887 TTGGTCTTTTTGTGTAAGACTTGTTTGAATGTTCTTATAATGTATAAGCTACATTTCATC 946
Query 955 GCAATTACTCTGTGAATTCTTGCCTCTTATATGAAATATTATGTTCATTCACTTCCC 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GCAATTACTCTGTGAATTCTTGCCTCTTATATGAAATATTATGTTCATTCACTTCCC 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5